Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS11100

Experiment: R2A with Thallium(I) acetate 0.001 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Thallium(I) acetate 0.001 mg/ml
2,368,706	+		RR42_RS11095	0.82	+0.3
2,368,706	+		RR42_RS11095	0.82	-1.1
2,368,749	+		RR42_RS11095	0.84	-0.1
2,368,749	+		RR42_RS11095	0.84	-2.1
2,368,750	-		RR42_RS11095	0.84	-0.7
2,368,753	+		RR42_RS11095	0.84	-0.2
2,368,754	-		RR42_RS11095	0.84	+0.4
2,368,754	-		RR42_RS11095	0.84	-0.1
2,368,882	+				+0.2
2,369,070	+				-0.6
2,369,070	+				-0.0
2,369,071	-				-0.8
2,369,102	+				+0.9
2,369,102	+				+0.1
2,369,102	+				+0.3
2,369,102	+				+0.6
2,369,103	-				-1.7
2,369,103	-				+0.1
2,369,103	-				+0.5
2,369,108	+				-1.7
2,369,108	+				-0.1
2,369,140	+				-0.4
2,369,140	+				-0.3
2,369,241	+				-0.6
2,369,241	+				-0.9
2,369,242	-				-0.1
2,369,242	-				-0.5
2,369,242	-				-0.7
2,369,250	+				+0.4
2,369,365	+				-2.2
2,369,365	+				-4.1
2,369,365	+				-1.5
2,369,366	-				-0.4
2,369,366	-				-0.7
2,369,366	-				-0.1
2,369,375	+				-1.0
2,369,375	+				-2.6
2,369,376	-				-1.1
2,369,409	-				+2.4
2,369,409	-				-1.4
2,369,426	+				-1.0
2,369,427	-				-0.7
2,369,433	-				-1.4
2,369,433	-				-0.6
2,369,433	-				-1.4
2,369,441	+				-1.9
2,369,442	-				-0.8
2,369,459	+				-1.3
2,369,766	+		RR42_RS11100	0.12	+0.8
2,369,767	-		RR42_RS11100	0.12	-0.5
2,369,767	-		RR42_RS11100	0.12	-0.2
2,369,767	-		RR42_RS11100	0.12	-0.3
2,369,767	-		RR42_RS11100	0.12	+0.5
2,369,791	-		RR42_RS11100	0.13	-0.5
2,369,828	+		RR42_RS11100	0.16	-0.0
2,369,828	+		RR42_RS11100	0.16	-0.4
2,369,829	-		RR42_RS11100	0.16	-0.1
2,369,829	-		RR42_RS11100	0.16	+0.5
2,369,856	+		RR42_RS11100	0.17	+0.3
2,369,857	-		RR42_RS11100	0.18	+0.6
2,369,868	+		RR42_RS11100	0.18	-0.4
2,369,868	+		RR42_RS11100	0.18	-0.7
2,369,868	+		RR42_RS11100	0.18	-0.9
2,369,869	-		RR42_RS11100	0.18	+0.1
2,369,873	-		RR42_RS11100	0.19	-0.3
2,369,959	+		RR42_RS11100	0.24	+0.7
2,369,959	+		RR42_RS11100	0.24	-0.1
2,369,960	-		RR42_RS11100	0.24	-0.2
2,369,960	-		RR42_RS11100	0.24	-1.1
2,369,960	-		RR42_RS11100	0.24	-0.6
2,370,360	+		RR42_RS11100	0.50	+0.3
2,370,360	+		RR42_RS11100	0.50	-0.6
2,370,360	+		RR42_RS11100	0.50	+0.3
2,370,360	+		RR42_RS11100	0.50	+0.7
2,370,399	+		RR42_RS11100	0.53	+0.1
2,370,400	-		RR42_RS11100	0.53	-1.5
2,370,400	-		RR42_RS11100	0.53	+1.4
2,370,552	+		RR42_RS11100	0.63	+0.4
2,370,552	+		RR42_RS11100	0.63	+1.4
2,370,553	-		RR42_RS11100	0.63	+0.3
2,370,553	-		RR42_RS11100	0.63	-0.5
2,370,553	-		RR42_RS11100	0.63	-0.8
2,370,553	-		RR42_RS11100	0.63	+0.0
2,370,553	-		RR42_RS11100	0.63	+0.3
2,370,714	+		RR42_RS11100	0.74	-0.0
2,370,715	-		RR42_RS11100	0.74	-0.9
2,370,753	-		RR42_RS11100	0.76	-0.5
2,370,816	+		RR42_RS11100	0.80	+0.1
2,370,817	-		RR42_RS11100	0.80	+0.0
2,370,817	-		RR42_RS11100	0.80	+0.6
2,370,817	-		RR42_RS11100	0.80	-1.7
2,370,963	+		RR42_RS11100	0.90	+0.0
2,370,963	+		RR42_RS11100	0.90	-0.9
2,370,963	+		RR42_RS11100	0.90	+0.7
2,370,963	+		RR42_RS11100	0.90	-0.9
2,370,964	-		RR42_RS11100	0.90	+0.3
2,370,964	-		RR42_RS11100	0.90	-0.4
2,371,036	-				-0.4
2,371,044	-				+0.3
2,371,189	-				-0.8
2,371,273	+				+3.4
2,371,321	+				+0.3
2,371,322	-				+0.2
2,371,438	-		RR42_RS11105	0.11	+0.8
2,371,438	-		RR42_RS11105	0.11	-0.9
2,371,438	-		RR42_RS11105	0.11	-0.1
2,371,638	+		RR42_RS11105	0.26	+0.2
2,371,638	+		RR42_RS11105	0.26	-0.1
2,371,638	+				+1.4
2,371,638	+		RR42_RS11105	0.26	+0.1
2,371,638	+		RR42_RS11105	0.26	-0.5
2,371,639	-		RR42_RS11105	0.26	+0.4
2,371,639	-		RR42_RS11105	0.26	+0.5
2,371,639	-		RR42_RS11105	0.26	+0.5
2,371,685	+		RR42_RS11105	0.30	+2.8
2,371,685	+		RR42_RS11105	0.30	+0.6
2,371,686	-		RR42_RS11105	0.30	+0.1
2,371,686	-		RR42_RS11105	0.30	+0.2
2,371,883	+		RR42_RS11105	0.45	-1.2
2,371,884	-		RR42_RS11105	0.45	+0.6
2,371,884	-		RR42_RS11105	0.45	-0.1
2,371,929	-		RR42_RS11105	0.49	+0.2
2,371,952	+		RR42_RS11105	0.51	+0.3
2,371,963	+		RR42_RS11105	0.52	+0.4
2,371,964	-		RR42_RS11105	0.52	+0.1
2,371,964	-		RR42_RS11105	0.52	+0.4
2,371,964	-		RR42_RS11105	0.52	-0.1