Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS10310

Experiment: R2A with Thallium(I) acetate 0.001 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntRR42_RS10310 and RR42_RS10315 are separated by 2 nucleotidesRR42_RS10315 and RR42_RS10320 are separated by 73 nucleotides RR42_RS10310: RR42_RS10310 - NADPH:quinone reductase, at 2,205,513 to 2,206,406 _RS10310 RR42_RS10315: RR42_RS10315 - short-chain dehydrogenase, at 2,206,409 to 2,207,170 _RS10315 RR42_RS10320: RR42_RS10320 - short-chain dehydrogenase, at 2,207,244 to 2,208,011 _RS10320 Position (kb) 2205 2206 2207Strain fitness (log2 ratio) -1 0 1 2at 2204.603 kb on + strandat 2204.603 kb on + strandat 2204.683 kb on - strandat 2204.693 kb on - strandat 2204.759 kb on + strandat 2204.866 kb on - strandat 2204.906 kb on - strandat 2204.932 kb on + strandat 2204.963 kb on + strandat 2204.969 kb on + strandat 2204.970 kb on - strandat 2204.976 kb on - strandat 2204.993 kb on + strandat 2204.993 kb on + strandat 2205.020 kb on + strandat 2205.026 kb on + strandat 2205.445 kb on + strandat 2205.776 kb on - strand, within RR42_RS10310at 2205.776 kb on - strand, within RR42_RS10310at 2206.539 kb on + strand, within RR42_RS10315at 2206.539 kb on + strand, within RR42_RS10315at 2206.548 kb on + strand, within RR42_RS10315at 2206.696 kb on + strand, within RR42_RS10315at 2206.696 kb on + strand, within RR42_RS10315at 2206.696 kb on + strand, within RR42_RS10315at 2206.729 kb on - strand, within RR42_RS10315at 2206.935 kb on - strand, within RR42_RS10315at 2207.081 kb on - strand, within RR42_RS10315at 2207.185 kb on + strandat 2207.186 kb on - strandat 2207.186 kb on - strandat 2207.218 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction R2A with Thallium(I) acetate 0.001 mg/ml
remove
2,204,603 + -0.5
2,204,603 + -0.7
2,204,683 - +0.2
2,204,693 - +0.5
2,204,759 + -0.5
2,204,866 - +0.4
2,204,906 - +0.8
2,204,932 + -0.7
2,204,963 + -0.7
2,204,969 + -1.3
2,204,970 - -0.7
2,204,976 - +0.4
2,204,993 + -0.5
2,204,993 + -0.0
2,205,020 + +0.4
2,205,026 + -0.8
2,205,445 + +0.0
2,205,776 - RR42_RS10310 0.29 +0.3
2,205,776 - RR42_RS10310 0.29 +0.8
2,206,539 + RR42_RS10315 0.17 -0.5
2,206,539 + RR42_RS10315 0.17 -1.0
2,206,548 + RR42_RS10315 0.18 -0.1
2,206,696 + RR42_RS10315 0.38 -1.4
2,206,696 + RR42_RS10315 0.38 -1.0
2,206,696 + RR42_RS10315 0.38 -0.4
2,206,729 - RR42_RS10315 0.42 -0.3
2,206,935 - RR42_RS10315 0.69 -0.5
2,207,081 - RR42_RS10315 0.88 -1.5
2,207,185 + -0.5
2,207,186 - +0.5
2,207,186 - +2.1
2,207,218 - -0.3

Or see this region's nucleotide sequence