Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS09150

Experiment: R2A with Thallium(I) acetate 0.001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS09140 and RR42_RS09145 are separated by 211 nucleotidesRR42_RS09145 and RR42_RS09150 are separated by 246 nucleotidesRR42_RS09150 and RR42_RS09155 are separated by 29 nucleotidesRR42_RS09155 and RR42_RS09160 are separated by 61 nucleotides RR42_RS09140: RR42_RS09140 - phosphoribosylformylglycinamidine synthase, at 1,930,102 to 1,934,148 _RS09140 RR42_RS09145: RR42_RS09145 - hypothetical protein, at 1,934,360 to 1,934,653 _RS09145 RR42_RS09150: RR42_RS09150 - molybdopterin-binding protein, at 1,934,900 to 1,935,652 _RS09150 RR42_RS09155: RR42_RS09155 - thioredoxin reductase, at 1,935,682 to 1,936,329 _RS09155 RR42_RS09160: RR42_RS09160 - hypothetical protein, at 1,936,391 to 1,937,032 _RS09160 Position (kb) 1934 1935 1936Strain fitness (log2 ratio) -2 -1 0 1 2at 1934.319 kb on + strandat 1934.323 kb on + strandat 1934.323 kb on + strandat 1934.323 kb on + strandat 1934.392 kb on - strand, within RR42_RS09145at 1934.400 kb on + strand, within RR42_RS09145at 1934.401 kb on - strand, within RR42_RS09145at 1934.401 kb on - strand, within RR42_RS09145at 1934.584 kb on - strand, within RR42_RS09145at 1934.584 kb on - strand, within RR42_RS09145at 1934.758 kb on + strandat 1934.758 kb on + strandat 1934.758 kb on + strandat 1934.758 kb on + strandat 1934.758 kb on + strandat 1934.759 kb on - strandat 1934.759 kb on - strandat 1934.761 kb on + strandat 1934.902 kb on - strandat 1934.920 kb on + strandat 1934.921 kb on - strandat 1934.921 kb on - strandat 1934.921 kb on - strandat 1934.921 kb on - strandat 1934.922 kb on + strandat 1934.922 kb on + strandat 1934.923 kb on - strandat 1934.923 kb on - strandat 1934.923 kb on - strandat 1934.981 kb on - strand, within RR42_RS09150at 1934.981 kb on - strand, within RR42_RS09150at 1935.124 kb on - strand, within RR42_RS09150at 1935.151 kb on + strand, within RR42_RS09150at 1935.247 kb on + strand, within RR42_RS09150at 1935.248 kb on - strand, within RR42_RS09150at 1935.381 kb on + strand, within RR42_RS09150at 1935.382 kb on - strand, within RR42_RS09150at 1935.426 kb on + strand, within RR42_RS09150at 1935.427 kb on - strand, within RR42_RS09150at 1935.935 kb on + strand, within RR42_RS09155at 1935.935 kb on + strand, within RR42_RS09155at 1935.935 kb on + strand, within RR42_RS09155at 1935.935 kb on + strand, within RR42_RS09155at 1935.935 kb on + strand, within RR42_RS09155at 1935.935 kb on + strand, within RR42_RS09155at 1935.936 kb on - strand, within RR42_RS09155at 1935.936 kb on - strand, within RR42_RS09155at 1935.936 kb on - strand, within RR42_RS09155at 1935.936 kb on - strand, within RR42_RS09155at 1935.936 kb on - strand, within RR42_RS09155at 1935.936 kb on - strand, within RR42_RS09155at 1935.960 kb on - strand, within RR42_RS09155at 1936.073 kb on + strand, within RR42_RS09155at 1936.073 kb on + strand, within RR42_RS09155at 1936.083 kb on - strand, within RR42_RS09155at 1936.205 kb on + strand, within RR42_RS09155at 1936.392 kb on + strandat 1936.392 kb on + strandat 1936.392 kb on + strandat 1936.393 kb on - strandat 1936.430 kb on - strandat 1936.588 kb on + strand, within RR42_RS09160at 1936.589 kb on - strand, within RR42_RS09160

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with Thallium(I) acetate 0.001 mg/ml
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1,934,319 + -0.8
1,934,323 + +0.3
1,934,323 + -2.1
1,934,323 + +0.1
1,934,392 - RR42_RS09145 0.11 -1.0
1,934,400 + RR42_RS09145 0.14 +0.3
1,934,401 - RR42_RS09145 0.14 +0.3
1,934,401 - RR42_RS09145 0.14 -0.4
1,934,584 - RR42_RS09145 0.76 -0.7
1,934,584 - RR42_RS09145 0.76 -0.0
1,934,758 + +1.8
1,934,758 + +0.5
1,934,758 + -0.2
1,934,758 + +1.2
1,934,758 + -0.4
1,934,759 - +0.3
1,934,759 - -1.2
1,934,761 + -0.4
1,934,902 - -0.3
1,934,920 + +0.2
1,934,921 - +0.1
1,934,921 - +0.1
1,934,921 - -1.2
1,934,921 - +0.8
1,934,922 + -1.0
1,934,922 + -1.0
1,934,923 - -1.0
1,934,923 - -1.2
1,934,923 - +0.6
1,934,981 - RR42_RS09150 0.11 -0.8
1,934,981 - RR42_RS09150 0.11 +0.6
1,935,124 - RR42_RS09150 0.30 -0.2
1,935,151 + RR42_RS09150 0.33 -0.9
1,935,247 + RR42_RS09150 0.46 +0.6
1,935,248 - RR42_RS09150 0.46 -0.3
1,935,381 + RR42_RS09150 0.64 -0.1
1,935,382 - RR42_RS09150 0.64 +0.3
1,935,426 + RR42_RS09150 0.70 +0.0
1,935,427 - RR42_RS09150 0.70 -1.2
1,935,935 + RR42_RS09155 0.39 +0.5
1,935,935 + RR42_RS09155 0.39 +0.5
1,935,935 + RR42_RS09155 0.39 +0.2
1,935,935 + RR42_RS09155 0.39 -1.6
1,935,935 + RR42_RS09155 0.39 -0.2
1,935,935 + RR42_RS09155 0.39 -0.1
1,935,936 - RR42_RS09155 0.39 -0.8
1,935,936 - RR42_RS09155 0.39 -0.1
1,935,936 - RR42_RS09155 0.39 -0.6
1,935,936 - RR42_RS09155 0.39 +1.3
1,935,936 - RR42_RS09155 0.39 -0.7
1,935,936 - RR42_RS09155 0.39 -0.5
1,935,960 - RR42_RS09155 0.43 +0.5
1,936,073 + RR42_RS09155 0.60 -0.0
1,936,073 + RR42_RS09155 0.60 -0.3
1,936,083 - RR42_RS09155 0.62 -0.1
1,936,205 + RR42_RS09155 0.81 +0.5
1,936,392 + -0.5
1,936,392 + -0.8
1,936,392 + -2.1
1,936,393 - +0.6
1,936,430 - -1.1
1,936,588 + RR42_RS09160 0.31 -0.4
1,936,589 - RR42_RS09160 0.31 -0.6

Or see this region's nucleotide sequence