Experiment: R2A with Thallium(I) acetate 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS08770 and RR42_RS08775 are separated by 396 nucleotides RR42_RS08775 and RR42_RS08780 are separated by 91 nucleotides
RR42_RS08770: RR42_RS08770 - 2-nitropropane dioxygenase, at 1,838,203 to 1,839,384
_RS08770
RR42_RS08775: RR42_RS08775 - protease, at 1,839,781 to 1,840,734
_RS08775
RR42_RS08780: RR42_RS08780 - protease, at 1,840,826 to 1,841,743
_RS08780
Position (kb)
1839
1840
1841 Strain fitness (log2 ratio)
-2
-1
0
1 at 1839.334 kb on + strand at 1839.384 kb on + strand at 1839.385 kb on - strand at 1839.396 kb on + strand at 1839.447 kb on + strand at 1839.448 kb on - strand at 1839.518 kb on - strand at 1839.518 kb on - strand at 1839.657 kb on + strand at 1839.811 kb on + strand at 1839.936 kb on + strand, within RR42_RS08775 at 1839.937 kb on - strand, within RR42_RS08775 at 1839.937 kb on - strand, within RR42_RS08775 at 1839.937 kb on - strand, within RR42_RS08775 at 1840.143 kb on - strand, within RR42_RS08775 at 1840.279 kb on + strand, within RR42_RS08775 at 1840.397 kb on - strand, within RR42_RS08775 at 1840.468 kb on + strand, within RR42_RS08775 at 1840.468 kb on + strand, within RR42_RS08775 at 1840.469 kb on - strand, within RR42_RS08775 at 1840.469 kb on - strand, within RR42_RS08775 at 1840.577 kb on - strand, within RR42_RS08775 at 1840.627 kb on - strand, within RR42_RS08775 at 1840.715 kb on - strand at 1840.810 kb on - strand at 1840.810 kb on - strand at 1840.887 kb on - strand at 1840.887 kb on - strand at 1840.889 kb on + strand at 1840.919 kb on + strand, within RR42_RS08780 at 1840.920 kb on - strand, within RR42_RS08780 at 1840.920 kb on - strand, within RR42_RS08780 at 1840.955 kb on + strand, within RR42_RS08780 at 1841.207 kb on + strand, within RR42_RS08780 at 1841.207 kb on + strand, within RR42_RS08780 at 1841.219 kb on - strand, within RR42_RS08780
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Thallium(I) acetate 0.001 mg/ml remove 1,839,334 + -0.0 1,839,384 + -0.9 1,839,385 - -0.0 1,839,396 + +0.4 1,839,447 + -0.9 1,839,448 - -0.2 1,839,518 - +0.4 1,839,518 - -0.1 1,839,657 + +0.5 1,839,811 + -0.4 1,839,936 + RR42_RS08775 0.16 -0.6 1,839,937 - RR42_RS08775 0.16 -0.9 1,839,937 - RR42_RS08775 0.16 -1.8 1,839,937 - RR42_RS08775 0.16 -0.9 1,840,143 - RR42_RS08775 0.38 -0.2 1,840,279 + RR42_RS08775 0.52 +0.7 1,840,397 - RR42_RS08775 0.65 -0.4 1,840,468 + RR42_RS08775 0.72 -0.2 1,840,468 + RR42_RS08775 0.72 +0.5 1,840,469 - RR42_RS08775 0.72 -0.2 1,840,469 - RR42_RS08775 0.72 -0.8 1,840,577 - RR42_RS08775 0.83 -1.0 1,840,627 - RR42_RS08775 0.89 -1.4 1,840,715 - +0.8 1,840,810 - -1.7 1,840,810 - -0.3 1,840,887 - -2.4 1,840,887 - +0.6 1,840,889 + -0.7 1,840,919 + RR42_RS08780 0.10 +0.4 1,840,920 - RR42_RS08780 0.10 +0.3 1,840,920 - RR42_RS08780 0.10 +0.5 1,840,955 + RR42_RS08780 0.14 -0.6 1,841,207 + RR42_RS08780 0.42 -0.2 1,841,207 + RR42_RS08780 0.42 +1.0 1,841,219 - RR42_RS08780 0.43 +0.7
Or see this region's nucleotide sequence