Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS02455

Experiment: R2A with Thallium(I) acetate 0.001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS02450 and RR42_RS02455 are separated by 33 nucleotidesRR42_RS02455 and RR42_RS02460 are separated by 129 nucleotides RR42_RS02450: RR42_RS02450 - MFS transporter, at 551,422 to 552,729 _RS02450 RR42_RS02455: RR42_RS02455 - agmatinase, at 552,763 to 553,749 _RS02455 RR42_RS02460: RR42_RS02460 - LysR family transcriptional regulator, at 553,879 to 554,775 _RS02460 Position (kb) 552 553 554Strain fitness (log2 ratio) -2 -1 0 1 2 3at 551.933 kb on + strand, within RR42_RS02450at 551.945 kb on + strand, within RR42_RS02450at 551.945 kb on + strand, within RR42_RS02450at 551.946 kb on - strand, within RR42_RS02450at 551.973 kb on - strand, within RR42_RS02450at 551.973 kb on - strand, within RR42_RS02450at 551.973 kb on - strand, within RR42_RS02450at 551.990 kb on + strand, within RR42_RS02450at 551.990 kb on + strand, within RR42_RS02450at 551.991 kb on - strand, within RR42_RS02450at 552.034 kb on + strand, within RR42_RS02450at 552.034 kb on + strand, within RR42_RS02450at 552.035 kb on - strand, within RR42_RS02450at 552.035 kb on - strand, within RR42_RS02450at 552.035 kb on - strand, within RR42_RS02450at 552.282 kb on + strand, within RR42_RS02450at 552.283 kb on - strand, within RR42_RS02450at 552.410 kb on + strand, within RR42_RS02450at 552.410 kb on + strand, within RR42_RS02450at 552.410 kb on + strand, within RR42_RS02450at 552.410 kb on + strand, within RR42_RS02450at 552.411 kb on - strand, within RR42_RS02450at 552.411 kb on - strand, within RR42_RS02450at 552.411 kb on - strand, within RR42_RS02450at 552.415 kb on - strand, within RR42_RS02450at 552.415 kb on - strand, within RR42_RS02450at 552.415 kb on - strand, within RR42_RS02450at 552.415 kb on - strand, within RR42_RS02450at 552.415 kb on - strand, within RR42_RS02450at 552.415 kb on - strand, within RR42_RS02450at 552.415 kb on - strand, within RR42_RS02450at 552.415 kb on - strand, within RR42_RS02450at 552.415 kb on - strand, within RR42_RS02450at 552.638 kb on + strandat 552.639 kb on - strandat 552.639 kb on - strandat 552.644 kb on + strandat 552.653 kb on + strandat 552.721 kb on - strandat 552.803 kb on - strandat 552.803 kb on - strandat 552.854 kb on + strandat 552.913 kb on + strand, within RR42_RS02455at 552.913 kb on + strand, within RR42_RS02455at 552.913 kb on + strand, within RR42_RS02455at 552.913 kb on + strand, within RR42_RS02455at 552.913 kb on + strand, within RR42_RS02455at 552.913 kb on + strand, within RR42_RS02455at 552.914 kb on - strand, within RR42_RS02455at 552.914 kb on - strand, within RR42_RS02455at 552.914 kb on - strand, within RR42_RS02455at 552.977 kb on + strand, within RR42_RS02455at 552.977 kb on + strand, within RR42_RS02455at 553.013 kb on + strand, within RR42_RS02455at 553.014 kb on - strand, within RR42_RS02455at 553.508 kb on + strand, within RR42_RS02455at 553.508 kb on + strand, within RR42_RS02455at 553.509 kb on - strand, within RR42_RS02455at 553.738 kb on - strandat 553.741 kb on + strandat 553.741 kb on + strandat 553.829 kb on - strandat 553.829 kb on - strandat 554.199 kb on + strand, within RR42_RS02460at 554.199 kb on + strand, within RR42_RS02460at 554.200 kb on - strand, within RR42_RS02460at 554.200 kb on - strand, within RR42_RS02460at 554.347 kb on + strand, within RR42_RS02460at 554.378 kb on - strand, within RR42_RS02460at 554.378 kb on - strand, within RR42_RS02460at 554.378 kb on - strand, within RR42_RS02460at 554.410 kb on + strand, within RR42_RS02460at 554.411 kb on - strand, within RR42_RS02460at 554.498 kb on - strand, within RR42_RS02460at 554.559 kb on + strand, within RR42_RS02460at 554.605 kb on + strand, within RR42_RS02460at 554.605 kb on + strand, within RR42_RS02460at 554.605 kb on + strand, within RR42_RS02460at 554.605 kb on + strand, within RR42_RS02460at 554.680 kb on + strand, within RR42_RS02460at 554.681 kb on - strand, within RR42_RS02460at 554.687 kb on + strandat 554.688 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with Thallium(I) acetate 0.001 mg/ml
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551,933 + RR42_RS02450 0.39 +0.3
551,945 + RR42_RS02450 0.40 +0.1
551,945 + RR42_RS02450 0.40 -1.7
551,946 - RR42_RS02450 0.40 -0.4
551,973 - RR42_RS02450 0.42 -0.4
551,973 - RR42_RS02450 0.42 +0.3
551,973 - RR42_RS02450 0.42 -0.2
551,990 + RR42_RS02450 0.43 +1.0
551,990 + RR42_RS02450 0.43 +1.7
551,991 - RR42_RS02450 0.44 +0.1
552,034 + RR42_RS02450 0.47 +0.7
552,034 + RR42_RS02450 0.47 +1.2
552,035 - RR42_RS02450 0.47 -0.7
552,035 - RR42_RS02450 0.47 -0.2
552,035 - RR42_RS02450 0.47 +0.3
552,282 + RR42_RS02450 0.66 -0.4
552,283 - RR42_RS02450 0.66 -0.1
552,410 + RR42_RS02450 0.76 -0.8
552,410 + RR42_RS02450 0.76 -1.0
552,410 + RR42_RS02450 0.76 -0.5
552,410 + RR42_RS02450 0.76 -0.7
552,411 - RR42_RS02450 0.76 -0.2
552,411 - RR42_RS02450 0.76 -1.5
552,411 - RR42_RS02450 0.76 +1.3
552,415 - RR42_RS02450 0.76 -0.3
552,415 - RR42_RS02450 0.76 -1.0
552,415 - RR42_RS02450 0.76 -1.0
552,415 - RR42_RS02450 0.76 -0.1
552,415 - RR42_RS02450 0.76 -1.1
552,415 - RR42_RS02450 0.76 -0.2
552,415 - RR42_RS02450 0.76 +0.2
552,415 - RR42_RS02450 0.76 +0.3
552,415 - RR42_RS02450 0.76 +1.4
552,638 + +0.3
552,639 - -0.2
552,639 - +0.1
552,644 + -0.0
552,653 + +0.0
552,721 - -0.6
552,803 - +0.9
552,803 - -0.7
552,854 + +0.9
552,913 + RR42_RS02455 0.15 -0.2
552,913 + RR42_RS02455 0.15 +0.5
552,913 + RR42_RS02455 0.15 -0.0
552,913 + RR42_RS02455 0.15 +1.0
552,913 + RR42_RS02455 0.15 +0.1
552,913 + RR42_RS02455 0.15 -0.9
552,914 - RR42_RS02455 0.15 +0.5
552,914 - RR42_RS02455 0.15 -0.8
552,914 - RR42_RS02455 0.15 -0.7
552,977 + RR42_RS02455 0.22 +0.0
552,977 + RR42_RS02455 0.22 -0.4
553,013 + RR42_RS02455 0.25 +3.0
553,014 - RR42_RS02455 0.25 +0.3
553,508 + RR42_RS02455 0.75 +1.4
553,508 + RR42_RS02455 0.75 -0.2
553,509 - RR42_RS02455 0.76 -0.6
553,738 - -1.5
553,741 + -1.8
553,741 + +0.6
553,829 - -0.3
553,829 - +0.9
554,199 + RR42_RS02460 0.36 -0.9
554,199 + RR42_RS02460 0.36 -0.0
554,200 - RR42_RS02460 0.36 -1.2
554,200 - RR42_RS02460 0.36 +0.0
554,347 + RR42_RS02460 0.52 -1.2
554,378 - RR42_RS02460 0.56 -1.4
554,378 - RR42_RS02460 0.56 +0.5
554,378 - RR42_RS02460 0.56 -0.9
554,410 + RR42_RS02460 0.59 +0.2
554,411 - RR42_RS02460 0.59 -0.4
554,498 - RR42_RS02460 0.69 -1.4
554,559 + RR42_RS02460 0.76 -0.6
554,605 + RR42_RS02460 0.81 -1.5
554,605 + RR42_RS02460 0.81 -0.1
554,605 + RR42_RS02460 0.81 +0.1
554,605 + RR42_RS02460 0.81 +0.2
554,680 + RR42_RS02460 0.89 +0.5
554,681 - RR42_RS02460 0.89 -0.8
554,687 + +0.7
554,688 - -0.0

Or see this region's nucleotide sequence