Experiment: R2A with Thallium(I) acetate 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS02210 and RR42_RS02215 overlap by 4 nucleotides RR42_RS02215 and RR42_RS02220 are separated by 202 nucleotides RR42_RS02220 and RR42_RS02225 are separated by 27 nucleotides
RR42_RS02210: RR42_RS02210 - succinate dehydrogenase, at 490,546 to 490,899
_RS02210
RR42_RS02215: RR42_RS02215 - fumarate reductase, at 490,896 to 491,609
_RS02215
RR42_RS02220: RR42_RS02220 - LysR family transcriptional regulator, at 491,812 to 492,753
_RS02220
RR42_RS02225: RR42_RS02225 - ABC transporter substrate-binding protein, at 492,781 to 493,764
_RS02225
Position (kb) 491
492
493 Strain fitness (log2 ratio) -1
0
1
2
3 at 490.856 kb on + strand, within RR42_RS02210 at 490.857 kb on - strand, within RR42_RS02210 at 490.900 kb on - strand at 490.900 kb on - strand at 490.900 kb on - strand at 491.003 kb on + strand, within RR42_RS02215 at 491.004 kb on - strand, within RR42_RS02215 at 491.503 kb on + strand, within RR42_RS02215 at 491.504 kb on - strand, within RR42_RS02215 at 491.551 kb on + strand at 491.587 kb on - strand at 492.290 kb on + strand, within RR42_RS02220 at 492.290 kb on + strand, within RR42_RS02220 at 492.290 kb on + strand, within RR42_RS02220 at 492.290 kb on + strand, within RR42_RS02220 at 492.290 kb on + strand, within RR42_RS02220 at 492.291 kb on - strand, within RR42_RS02220 at 492.291 kb on - strand, within RR42_RS02220 at 492.292 kb on + strand, within RR42_RS02220 at 492.292 kb on + strand, within RR42_RS02220 at 492.292 kb on + strand, within RR42_RS02220 at 492.292 kb on + strand, within RR42_RS02220 at 492.293 kb on - strand, within RR42_RS02220 at 492.293 kb on - strand, within RR42_RS02220 at 492.293 kb on - strand, within RR42_RS02220 at 492.651 kb on + strand, within RR42_RS02220 at 492.652 kb on - strand, within RR42_RS02220 at 492.652 kb on - strand, within RR42_RS02220 at 492.670 kb on + strand at 492.845 kb on + strand at 493.416 kb on + strand, within RR42_RS02225 at 493.524 kb on + strand, within RR42_RS02225 at 493.525 kb on - strand, within RR42_RS02225 at 493.646 kb on + strand, within RR42_RS02225 at 493.646 kb on + strand, within RR42_RS02225 at 493.739 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Thallium(I) acetate 0.001 mg/ml remove 490,856 + RR42_RS02210 0.88 -0.5 490,857 - RR42_RS02210 0.88 +3.5 490,900 - +2.5 490,900 - +0.5 490,900 - +0.0 491,003 + RR42_RS02215 0.15 +0.1 491,004 - RR42_RS02215 0.15 -0.8 491,503 + RR42_RS02215 0.85 -1.0 491,504 - RR42_RS02215 0.85 -0.0 491,551 + -0.3 491,587 - -1.0 492,290 + RR42_RS02220 0.51 +0.3 492,290 + RR42_RS02220 0.51 -0.4 492,290 + RR42_RS02220 0.51 +0.8 492,290 + RR42_RS02220 0.51 -0.2 492,290 + RR42_RS02220 0.51 +1.1 492,291 - RR42_RS02220 0.51 -1.3 492,291 - RR42_RS02220 0.51 +0.4 492,292 + RR42_RS02220 0.51 -1.1 492,292 + RR42_RS02220 0.51 -0.7 492,292 + RR42_RS02220 0.51 +0.3 492,292 + RR42_RS02220 0.51 -0.7 492,293 - RR42_RS02220 0.51 +0.2 492,293 - RR42_RS02220 0.51 -0.1 492,293 - RR42_RS02220 0.51 +1.0 492,651 + RR42_RS02220 0.89 -0.5 492,652 - RR42_RS02220 0.89 +0.8 492,652 - RR42_RS02220 0.89 +0.2 492,670 + -1.3 492,845 + -0.3 493,416 + RR42_RS02225 0.65 -1.3 493,524 + RR42_RS02225 0.76 +0.3 493,525 - RR42_RS02225 0.76 -1.1 493,646 + RR42_RS02225 0.88 -0.2 493,646 + RR42_RS02225 0.88 -1.6 493,739 - +0.5
Or see this region's nucleotide sequence