Experiment: R2A with Thallium(I) acetate 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS01460 and RR42_RS01465 are separated by 644 nucleotides RR42_RS01465 and RR42_RS01470 are separated by 56 nucleotides RR42_RS01470 and RR42_RS01475 are separated by 224 nucleotides
RR42_RS01460: RR42_RS01460 - glucosamine--fructose-6-phosphate aminotransferase, at 328,636 to 330,474
_RS01460
RR42_RS01465: RR42_RS01465 - histidine kinase, at 331,119 to 333,086
_RS01465
RR42_RS01470: RR42_RS01470 - hypothetical protein, at 333,143 to 333,856
_RS01470
RR42_RS01475: RR42_RS01475 - hypothetical protein, at 334,081 to 334,401
_RS01475
Position (kb) 331
332
333
334 Strain fitness (log2 ratio) -2
-1
0
1
2 at 330.473 kb on - strand at 330.485 kb on - strand at 330.485 kb on - strand at 330.556 kb on + strand at 330.556 kb on + strand at 330.557 kb on - strand at 330.557 kb on - strand at 330.679 kb on - strand at 330.746 kb on + strand at 330.868 kb on + strand at 330.868 kb on + strand at 330.869 kb on - strand at 330.869 kb on - strand at 330.869 kb on - strand at 330.869 kb on - strand at 330.869 kb on - strand at 330.873 kb on + strand at 330.873 kb on + strand at 331.521 kb on + strand, within RR42_RS01465 at 331.614 kb on + strand, within RR42_RS01465 at 331.615 kb on - strand, within RR42_RS01465 at 331.788 kb on + strand, within RR42_RS01465 at 331.788 kb on + strand, within RR42_RS01465 at 331.789 kb on - strand, within RR42_RS01465 at 331.992 kb on + strand, within RR42_RS01465 at 331.995 kb on + strand, within RR42_RS01465 at 331.996 kb on - strand, within RR42_RS01465 at 331.996 kb on - strand, within RR42_RS01465 at 331.996 kb on - strand, within RR42_RS01465 at 331.996 kb on - strand, within RR42_RS01465 at 332.052 kb on + strand, within RR42_RS01465 at 332.052 kb on + strand, within RR42_RS01465 at 332.053 kb on - strand, within RR42_RS01465 at 332.053 kb on - strand, within RR42_RS01465 at 332.053 kb on - strand, within RR42_RS01465 at 332.076 kb on + strand, within RR42_RS01465 at 332.076 kb on + strand, within RR42_RS01465 at 332.076 kb on + strand, within RR42_RS01465 at 332.076 kb on + strand, within RR42_RS01465 at 332.076 kb on + strand, within RR42_RS01465 at 332.076 kb on + strand, within RR42_RS01465 at 332.077 kb on - strand, within RR42_RS01465 at 332.077 kb on - strand, within RR42_RS01465 at 332.077 kb on - strand, within RR42_RS01465 at 332.077 kb on - strand, within RR42_RS01465 at 332.077 kb on - strand, within RR42_RS01465 at 332.077 kb on - strand, within RR42_RS01465 at 332.077 kb on - strand, within RR42_RS01465 at 332.118 kb on + strand, within RR42_RS01465 at 332.119 kb on - strand, within RR42_RS01465 at 332.119 kb on - strand, within RR42_RS01465 at 332.119 kb on - strand, within RR42_RS01465 at 332.181 kb on + strand, within RR42_RS01465 at 332.181 kb on + strand, within RR42_RS01465 at 332.181 kb on + strand, within RR42_RS01465 at 332.182 kb on - strand, within RR42_RS01465 at 332.182 kb on - strand, within RR42_RS01465 at 332.182 kb on - strand, within RR42_RS01465 at 332.182 kb on - strand, within RR42_RS01465 at 332.182 kb on - strand, within RR42_RS01465 at 332.182 kb on - strand, within RR42_RS01465 at 332.475 kb on + strand, within RR42_RS01465 at 332.475 kb on + strand, within RR42_RS01465 at 332.476 kb on - strand, within RR42_RS01465 at 332.477 kb on + strand, within RR42_RS01465 at 332.796 kb on + strand, within RR42_RS01465 at 332.796 kb on + strand, within RR42_RS01465 at 332.796 kb on + strand, within RR42_RS01465 at 332.796 kb on + strand, within RR42_RS01465 at 332.797 kb on - strand, within RR42_RS01465 at 332.797 kb on - strand, within RR42_RS01465 at 332.797 kb on - strand, within RR42_RS01465 at 332.803 kb on - strand, within RR42_RS01465 at 333.227 kb on + strand, within RR42_RS01470 at 333.228 kb on - strand, within RR42_RS01470 at 333.300 kb on + strand, within RR42_RS01470 at 333.301 kb on - strand, within RR42_RS01470 at 333.446 kb on + strand, within RR42_RS01470 at 333.630 kb on + strand, within RR42_RS01470 at 333.630 kb on + strand, within RR42_RS01470 at 333.630 kb on + strand, within RR42_RS01470 at 333.631 kb on - strand, within RR42_RS01470 at 333.631 kb on - strand, within RR42_RS01470 at 333.704 kb on + strand, within RR42_RS01470 at 333.704 kb on + strand, within RR42_RS01470 at 333.704 kb on + strand, within RR42_RS01470 at 333.704 kb on + strand, within RR42_RS01470 at 333.704 kb on + strand, within RR42_RS01470 at 333.705 kb on - strand, within RR42_RS01470 at 333.705 kb on - strand, within RR42_RS01470 at 333.705 kb on - strand, within RR42_RS01470 at 333.815 kb on + strand at 333.816 kb on - strand at 333.928 kb on - strand at 333.958 kb on + strand at 333.959 kb on - strand at 334.066 kb on + strand at 334.066 kb on + strand at 334.066 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Thallium(I) acetate 0.001 mg/ml remove 330,473 - +0.2 330,485 - -0.3 330,485 - +0.1 330,556 + -0.2 330,556 + +1.2 330,557 - -0.6 330,557 - -1.2 330,679 - +0.5 330,746 + +2.7 330,868 + -0.7 330,868 + +0.1 330,869 - +0.1 330,869 - +1.1 330,869 - +0.5 330,869 - -1.2 330,869 - -1.6 330,873 + -0.3 330,873 + -0.7 331,521 + RR42_RS01465 0.20 -1.6 331,614 + RR42_RS01465 0.25 -0.1 331,615 - RR42_RS01465 0.25 -0.4 331,788 + RR42_RS01465 0.34 -0.3 331,788 + RR42_RS01465 0.34 +1.4 331,789 - RR42_RS01465 0.34 -0.1 331,992 + RR42_RS01465 0.44 +0.4 331,995 + RR42_RS01465 0.45 -1.5 331,996 - RR42_RS01465 0.45 -1.1 331,996 - RR42_RS01465 0.45 +0.1 331,996 - RR42_RS01465 0.45 -0.2 331,996 - RR42_RS01465 0.45 -1.1 332,052 + RR42_RS01465 0.47 +0.5 332,052 + RR42_RS01465 0.47 +0.0 332,053 - RR42_RS01465 0.47 +0.1 332,053 - RR42_RS01465 0.47 +0.5 332,053 - RR42_RS01465 0.47 -1.1 332,076 + RR42_RS01465 0.49 +0.2 332,076 + RR42_RS01465 0.49 +0.3 332,076 + RR42_RS01465 0.49 -1.2 332,076 + RR42_RS01465 0.49 +1.3 332,076 + RR42_RS01465 0.49 -1.6 332,076 + RR42_RS01465 0.49 +0.1 332,077 - RR42_RS01465 0.49 +1.0 332,077 - RR42_RS01465 0.49 +0.8 332,077 - RR42_RS01465 0.49 +1.1 332,077 - RR42_RS01465 0.49 -1.1 332,077 - RR42_RS01465 0.49 -0.0 332,077 - RR42_RS01465 0.49 +1.6 332,077 - RR42_RS01465 0.49 -0.2 332,118 + RR42_RS01465 0.51 -0.4 332,119 - RR42_RS01465 0.51 +0.2 332,119 - RR42_RS01465 0.51 +0.2 332,119 - RR42_RS01465 0.51 +0.7 332,181 + RR42_RS01465 0.54 +0.4 332,181 + RR42_RS01465 0.54 +1.0 332,181 + RR42_RS01465 0.54 +1.5 332,182 - RR42_RS01465 0.54 +1.1 332,182 - RR42_RS01465 0.54 +1.0 332,182 - RR42_RS01465 0.54 +0.5 332,182 - RR42_RS01465 0.54 -0.2 332,182 - RR42_RS01465 0.54 +0.7 332,182 - RR42_RS01465 0.54 -1.2 332,475 + RR42_RS01465 0.69 -0.4 332,475 + RR42_RS01465 0.69 +0.5 332,476 - RR42_RS01465 0.69 -0.7 332,477 + RR42_RS01465 0.69 +0.4 332,796 + RR42_RS01465 0.85 +0.6 332,796 + RR42_RS01465 0.85 -0.8 332,796 + RR42_RS01465 0.85 +2.1 332,796 + RR42_RS01465 0.85 +0.1 332,797 - RR42_RS01465 0.85 +0.2 332,797 - RR42_RS01465 0.85 +0.2 332,797 - RR42_RS01465 0.85 -0.1 332,803 - RR42_RS01465 0.86 -0.6 333,227 + RR42_RS01470 0.12 -0.8 333,228 - RR42_RS01470 0.12 +1.4 333,300 + RR42_RS01470 0.22 +0.5 333,301 - RR42_RS01470 0.22 +1.0 333,446 + RR42_RS01470 0.42 -0.3 333,630 + RR42_RS01470 0.68 -0.4 333,630 + RR42_RS01470 0.68 +2.0 333,630 + RR42_RS01470 0.68 -0.1 333,631 - RR42_RS01470 0.68 +1.5 333,631 - RR42_RS01470 0.68 +0.5 333,704 + RR42_RS01470 0.79 +0.6 333,704 + RR42_RS01470 0.79 -1.7 333,704 + RR42_RS01470 0.79 +0.3 333,704 + RR42_RS01470 0.79 +2.0 333,704 + RR42_RS01470 0.79 +0.0 333,705 - RR42_RS01470 0.79 -0.3 333,705 - RR42_RS01470 0.79 -0.1 333,705 - RR42_RS01470 0.79 -1.9 333,815 + -0.1 333,816 - +2.0 333,928 - -0.5 333,958 + +0.4 333,959 - +1.4 334,066 + -1.4 334,066 + -0.8 334,066 + -1.6
Or see this region's nucleotide sequence