Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS01295

Experiment: R2A with Thallium(I) acetate 0.001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS01290 and RR42_RS01295 are separated by 141 nucleotidesRR42_RS01295 and RR42_RS01300 are separated by 12 nucleotidesRR42_RS01300 and RR42_RS01305 are separated by 6 nucleotides RR42_RS01290: RR42_RS01290 - thiamine biosynthesis protein ThiC, at 293,872 to 295,758 _RS01290 RR42_RS01295: RR42_RS01295 - cytochrome C biogenesis protein CcdA, at 295,900 to 297,078 _RS01295 RR42_RS01300: RR42_RS01300 - thiamine biosynthesis protein ThiS, at 297,091 to 297,288 _RS01300 RR42_RS01305: RR42_RS01305 - thiazole synthase, at 297,295 to 298,143 _RS01305 Position (kb) 295 296 297 298Strain fitness (log2 ratio) -1 0 1 2at 295.209 kb on + strand, within RR42_RS01290at 295.234 kb on + strand, within RR42_RS01290at 295.234 kb on + strand, within RR42_RS01290at 295.564 kb on + strand, within RR42_RS01290at 295.750 kb on + strandat 295.750 kb on + strandat 295.756 kb on + strandat 295.763 kb on + strandat 295.808 kb on + strandat 295.844 kb on + strandat 295.844 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with Thallium(I) acetate 0.001 mg/ml
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295,209 + RR42_RS01290 0.71 -0.4
295,234 + RR42_RS01290 0.72 +0.3
295,234 + RR42_RS01290 0.72 +0.2
295,564 + RR42_RS01290 0.90 +0.3
295,750 + +0.2
295,750 + +0.2
295,756 + +0.2
295,763 + +0.0
295,808 + -0.0
295,844 + +1.0
295,844 + +2.0

Or see this region's nucleotide sequence