Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS01090

Experiment: R2A with Thallium(I) acetate 0.001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS01080 and RR42_RS01085 are separated by 23 nucleotidesRR42_RS01085 and RR42_RS01090 overlap by 4 nucleotidesRR42_RS01090 and RR42_RS01095 are separated by 214 nucleotidesRR42_RS01095 and RR42_RS01100 are separated by 35 nucleotides RR42_RS01080: RR42_RS01080 - hypothetical protein, at 253,333 to 253,629 _RS01080 RR42_RS01085: RR42_RS01085 - chemotaxis protein CheY, at 253,653 to 254,276 _RS01085 RR42_RS01090: RR42_RS01090 - histidine kinase, at 254,273 to 255,676 _RS01090 RR42_RS01095: RR42_RS01095 - membrane protein, at 255,891 to 256,370 _RS01095 RR42_RS01100: RR42_RS01100 - LysR family transcriptional regulator, at 256,406 to 257,341 _RS01100 Position (kb) 254 255 256Strain fitness (log2 ratio) -2 -1 0 1 2at 253.346 kb on + strandat 253.346 kb on + strandat 253.346 kb on + strandat 253.346 kb on + strandat 253.347 kb on - strandat 253.347 kb on - strandat 253.347 kb on - strandat 253.425 kb on - strand, within RR42_RS01080at 253.609 kb on + strandat 253.609 kb on + strandat 253.610 kb on - strandat 253.610 kb on - strandat 253.610 kb on - strandat 253.610 kb on - strandat 253.610 kb on - strandat 253.637 kb on + strandat 253.638 kb on - strandat 253.654 kb on + strandat 253.655 kb on - strandat 253.706 kb on + strandat 253.706 kb on + strandat 253.706 kb on + strandat 253.706 kb on + strandat 253.707 kb on - strandat 253.707 kb on - strandat 253.707 kb on - strandat 253.707 kb on - strandat 253.707 kb on - strandat 253.707 kb on - strandat 253.733 kb on + strand, within RR42_RS01085at 253.733 kb on + strand, within RR42_RS01085at 253.733 kb on + strand, within RR42_RS01085at 253.733 kb on + strand, within RR42_RS01085at 253.734 kb on - strand, within RR42_RS01085at 253.894 kb on + strand, within RR42_RS01085at 253.895 kb on - strand, within RR42_RS01085at 253.895 kb on - strand, within RR42_RS01085at 253.945 kb on + strand, within RR42_RS01085at 253.945 kb on + strand, within RR42_RS01085at 254.077 kb on + strand, within RR42_RS01085at 254.077 kb on + strand, within RR42_RS01085at 254.078 kb on - strand, within RR42_RS01085at 254.433 kb on + strand, within RR42_RS01090at 254.434 kb on - strand, within RR42_RS01090at 254.754 kb on + strand, within RR42_RS01090at 254.754 kb on + strand, within RR42_RS01090at 254.754 kb on + strand, within RR42_RS01090at 254.755 kb on - strand, within RR42_RS01090at 254.755 kb on - strand, within RR42_RS01090at 254.827 kb on - strand, within RR42_RS01090at 254.874 kb on + strand, within RR42_RS01090at 254.875 kb on - strand, within RR42_RS01090at 254.875 kb on - strand, within RR42_RS01090at 255.150 kb on + strand, within RR42_RS01090at 255.150 kb on + strand, within RR42_RS01090at 255.151 kb on - strand, within RR42_RS01090at 255.151 kb on - strand, within RR42_RS01090at 255.192 kb on + strand, within RR42_RS01090at 255.192 kb on + strand, within RR42_RS01090at 255.193 kb on - strand, within RR42_RS01090at 255.193 kb on - strand, within RR42_RS01090at 255.213 kb on + strand, within RR42_RS01090at 255.213 kb on + strand, within RR42_RS01090at 255.213 kb on + strand, within RR42_RS01090at 255.213 kb on + strand, within RR42_RS01090at 255.214 kb on - strand, within RR42_RS01090at 255.229 kb on - strand, within RR42_RS01090at 255.294 kb on + strand, within RR42_RS01090at 255.295 kb on - strand, within RR42_RS01090at 255.670 kb on + strandat 255.671 kb on - strandat 255.688 kb on - strandat 255.688 kb on - strandat 255.844 kb on - strandat 255.844 kb on - strandat 255.856 kb on - strandat 255.884 kb on - strandat 255.884 kb on - strandat 255.884 kb on - strandat 255.884 kb on - strandat 256.074 kb on - strand, within RR42_RS01095at 256.394 kb on + strandat 256.407 kb on + strandat 256.407 kb on + strandat 256.407 kb on + strandat 256.408 kb on - strandat 256.480 kb on + strandat 256.480 kb on + strandat 256.481 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with Thallium(I) acetate 0.001 mg/ml
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253,346 + -0.6
253,346 + -0.2
253,346 + +0.5
253,346 + +0.9
253,347 - +1.2
253,347 - +1.0
253,347 - +0.2
253,425 - RR42_RS01080 0.31 +0.4
253,609 + -0.7
253,609 + -0.0
253,610 - +1.1
253,610 - -0.2
253,610 - -2.3
253,610 - -0.5
253,610 - -1.0
253,637 + -0.6
253,638 - +0.3
253,654 + -0.2
253,655 - +1.5
253,706 + +0.4
253,706 + -1.1
253,706 + +1.0
253,706 + +0.2
253,707 - -0.4
253,707 - -0.9
253,707 - +1.0
253,707 - -1.3
253,707 - -0.8
253,707 - -0.0
253,733 + RR42_RS01085 0.13 +0.6
253,733 + RR42_RS01085 0.13 -0.6
253,733 + RR42_RS01085 0.13 -0.0
253,733 + RR42_RS01085 0.13 -0.6
253,734 - RR42_RS01085 0.13 +2.0
253,894 + RR42_RS01085 0.39 +0.1
253,895 - RR42_RS01085 0.39 +0.7
253,895 - RR42_RS01085 0.39 +0.3
253,945 + RR42_RS01085 0.47 -1.5
253,945 + RR42_RS01085 0.47 -0.3
254,077 + RR42_RS01085 0.68 +0.3
254,077 + RR42_RS01085 0.68 -0.2
254,078 - RR42_RS01085 0.68 -1.5
254,433 + RR42_RS01090 0.11 +1.0
254,434 - RR42_RS01090 0.11 -0.9
254,754 + RR42_RS01090 0.34 +0.2
254,754 + RR42_RS01090 0.34 -0.8
254,754 + RR42_RS01090 0.34 +0.3
254,755 - RR42_RS01090 0.34 +0.4
254,755 - RR42_RS01090 0.34 +1.3
254,827 - RR42_RS01090 0.39 -0.8
254,874 + RR42_RS01090 0.43 +0.6
254,875 - RR42_RS01090 0.43 +0.2
254,875 - RR42_RS01090 0.43 +1.8
255,150 + RR42_RS01090 0.62 +2.4
255,150 + RR42_RS01090 0.62 +0.9
255,151 - RR42_RS01090 0.63 +1.3
255,151 - RR42_RS01090 0.63 +2.0
255,192 + RR42_RS01090 0.65 +1.4
255,192 + RR42_RS01090 0.65 +0.3
255,193 - RR42_RS01090 0.66 +0.3
255,193 - RR42_RS01090 0.66 +0.0
255,213 + RR42_RS01090 0.67 -0.7
255,213 + RR42_RS01090 0.67 +1.4
255,213 + RR42_RS01090 0.67 +1.7
255,213 + RR42_RS01090 0.67 -0.7
255,214 - RR42_RS01090 0.67 -0.5
255,229 - RR42_RS01090 0.68 -0.7
255,294 + RR42_RS01090 0.73 +0.0
255,295 - RR42_RS01090 0.73 -0.8
255,670 + +1.0
255,671 - +0.5
255,688 - -1.7
255,688 - -1.7
255,844 - +0.5
255,844 - +0.8
255,856 - -0.6
255,884 - +0.3
255,884 - -0.5
255,884 - -0.7
255,884 - -1.6
256,074 - RR42_RS01095 0.38 -1.0
256,394 + -0.2
256,407 + +0.8
256,407 + -1.0
256,407 + +0.2
256,408 - -1.4
256,480 + -1.2
256,480 + +0.4
256,481 - +1.3

Or see this region's nucleotide sequence