Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_5978

Experiment: D-Galactose (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	D-Galactose (C)
6,794,671	+		Pf6N2E2_5977	0.30	-1.2
6,794,671	+		Pf6N2E2_5977	0.30	-2.1
6,794,672	-		Pf6N2E2_5977	0.30	-1.9
6,794,672	-		Pf6N2E2_5977	0.30	-2.6
6,794,930	-		Pf6N2E2_5977	0.53	-0.9
6,794,930	-		Pf6N2E2_5977	0.53	-1.6
6,794,971	+		Pf6N2E2_5977	0.56	-1.5
6,795,073	+		Pf6N2E2_5977	0.65	-0.6
6,795,154	+		Pf6N2E2_5977	0.72	-3.1
6,795,232	+		Pf6N2E2_5977	0.79	-0.1
6,795,233	-		Pf6N2E2_5977	0.79	-1.8
6,795,233	-		Pf6N2E2_5977	0.79	-1.6
6,795,233	-		Pf6N2E2_5977	0.79	-0.6
6,795,271	+		Pf6N2E2_5977	0.83	-1.9
6,795,271	+		Pf6N2E2_5977	0.83	-0.2
6,795,271	+		Pf6N2E2_5977	0.83	-3.0
6,795,272	-		Pf6N2E2_5977	0.83	-3.0
6,795,272	-		Pf6N2E2_5977	0.83	-1.7
6,795,299	-		Pf6N2E2_5977	0.85	-0.6
6,795,299	-		Pf6N2E2_5977	0.85	-1.1
6,795,388	+				-2.4
6,795,388	+				-2.9
6,795,388	+				-1.3
6,795,388	+				-2.2
6,795,388	+				-1.8
6,795,388	+				-1.4
6,795,388	+				-3.7
6,795,388	+				-0.5
6,795,389	-				-1.7
6,795,389	-				-0.5
6,795,389	-				-2.0
6,795,389	-				-1.8
6,795,389	-				+0.1
6,795,389	-				-3.1
6,795,552	+				-1.2
6,795,552	+				-0.5
6,795,552	+				-2.4
6,795,552	+				-0.7
6,795,552	+				-1.0
6,795,552	+				-1.0
6,795,553	-				-2.1
6,795,553	-				-1.2
6,795,553	-				-1.0
6,795,553	-				-2.0
6,795,553	-				-2.9
6,795,553	-				-1.2
6,795,553	-				-1.8
6,795,553	-				-1.6
6,795,556	+				-2.6
6,795,556	+				-1.9
6,795,556	+				-1.6
6,795,556	+				+0.1
6,795,556	+				-0.9
6,795,556	+				-1.5
6,795,556	+				-1.4
6,795,556	+				-1.2
6,795,556	+				-2.0
6,795,556	+				-1.5
6,795,556	+				-2.8
6,795,556	+				-3.4
6,795,556	+				-1.0
6,795,556	+				-3.4
6,795,556	+				-1.4
6,795,557	-				-2.5
6,795,557	-				-1.2
6,795,557	-				-2.3
6,795,557	-				-1.9
6,795,557	-				-2.2
6,795,557	-				-2.9
6,795,557	-				-2.0
6,795,557	-				-1.5
6,795,623	+				-1.9
6,795,624	-				-2.0
6,795,636	-				-3.5
6,795,638	+				-1.2
6,795,638	+				-1.9
6,795,639	-				-0.2
6,795,639	-				-1.6
6,795,639	-				-0.6
6,795,639	-				-2.3
6,795,639	-				-2.4
6,795,644	+				-2.3
6,795,644	+				-0.6
6,795,644	+				-1.3
6,795,644	+				-1.6
6,795,761	+				-1.6
6,795,761	+				-1.6
6,795,762	-				+1.4
6,795,762	-				-1.6
6,795,866	+		Pf6N2E2_5978	0.16	-0.1
6,795,866	+		Pf6N2E2_5978	0.16	-2.0
6,795,867	-		Pf6N2E2_5978	0.16	-1.3
6,795,867	-		Pf6N2E2_5978	0.16	-0.1
6,795,926	+		Pf6N2E2_5978	0.20	-1.2
6,795,927	-		Pf6N2E2_5978	0.20	-2.3
6,795,927	-		Pf6N2E2_5978	0.20	-0.7
6,795,929	-		Pf6N2E2_5978	0.20	-2.2
6,795,929	-		Pf6N2E2_5978	0.20	-1.9
6,795,970	-		Pf6N2E2_5978	0.23	-2.6
6,795,970	-		Pf6N2E2_5978	0.23	-0.9
6,796,109	+		Pf6N2E2_5978	0.34	-1.0
6,796,110	-		Pf6N2E2_5978	0.34	-1.0
6,796,110	-		Pf6N2E2_5978	0.34	-2.7
6,796,217	-		Pf6N2E2_5978	0.42	-3.2
6,796,238	+		Pf6N2E2_5978	0.44	-1.5
6,796,247	+		Pf6N2E2_5978	0.45	-2.1
6,796,248	-		Pf6N2E2_5978	0.45	-1.8
6,796,412	+		Pf6N2E2_5978	0.57	-2.9
6,796,412	+		Pf6N2E2_5978	0.57	-1.3
6,796,412	+		Pf6N2E2_5978	0.57	-1.6
6,796,413	-		Pf6N2E2_5978	0.57	-2.1
6,796,413	-		Pf6N2E2_5978	0.57	-0.7
6,796,413	-		Pf6N2E2_5978	0.57	-1.2
6,796,413	-		Pf6N2E2_5978	0.57	-2.9
6,796,472	+		Pf6N2E2_5978	0.62	-1.3
6,796,472	+		Pf6N2E2_5978	0.62	-0.8
6,796,472	+		Pf6N2E2_5978	0.62	-3.4
6,796,473	-		Pf6N2E2_5978	0.62	+0.7
6,796,484	+		Pf6N2E2_5978	0.63	-1.7
6,796,895	+				-2.6
6,796,895	+				-0.7
6,796,895	+				-3.1
6,796,895	+				-1.6
6,796,895	+				-2.2
6,796,895	+				-2.5
6,796,895	+				-0.3
6,796,895	+				-3.0
6,796,895	+				-1.2
6,796,895	+				-0.6
6,796,895	+				-1.4
6,796,895	+				-2.7
6,796,895	+				-1.0
6,796,895	+				-1.7
6,796,895	+				-3.4
6,796,895	+				-2.5
6,796,896	-				-2.2
6,796,896	-				-2.8
6,796,896	-				-1.7
6,796,896	-				-2.1
6,796,896	-				-2.7
6,796,896	-				-2.9
6,796,896	-				-1.5
6,796,896	-				-1.3
6,796,896	-				-0.4
6,796,896	-				-0.0
6,796,896	-				-3.5
6,796,896	-				+0.7
6,796,896	-				-1.4
6,796,896	-				-2.4
6,796,896	-				-1.6
6,796,896	-				-1.9
6,796,896	-				-1.6
6,796,896	-				-1.9
6,796,896	-				-2.1
6,796,896	-				-0.1
6,796,896	-				-0.3
6,796,896	-				-2.5
6,796,896	-				+2.7
6,796,896	-				-2.0
6,796,896	-				-2.4
6,796,897	+				-2.5
6,796,897	+				-1.9
6,796,897	+				-3.0
6,796,897	+				-1.0
6,796,897	+				-2.6
6,796,897	+				-2.5
6,796,897	+				-1.0
6,796,897	+				-3.0
6,796,897	+				-1.2
6,796,897	+				-2.6
6,796,898	-				-1.8
6,796,898	-				+0.9
6,796,898	-				-2.3
6,796,898	-				-2.6
6,796,898	-				-1.5
6,796,898	-				-0.0
6,796,898	-				-1.7
6,796,898	-				-1.5
6,796,931	+				-2.8
6,796,931	+				-1.9
6,796,931	+				-2.2
6,796,931	+				-2.2
6,796,931	+				-3.4
6,796,931	+				-2.4
6,796,931	+				-3.3
6,796,932	-				-2.3
6,796,932	-				-2.1
6,796,970	+				-3.0
6,796,971	-				+0.5
6,796,971	-				-2.1
6,796,971	-				-0.9
6,796,993	+				+0.0
6,796,993	+				-1.1
6,796,994	-				-0.5
6,796,994	-				+0.6
6,797,072	+				-0.5
6,797,073	-				-2.3
6,797,323	-		Pf6N2E2_5979	0.36	-0.4
6,797,323	-		Pf6N2E2_5979	0.36	+0.5
6,797,323	-		Pf6N2E2_5979	0.36	-1.9
6,797,395	-		Pf6N2E2_5979	0.45	+0.3
6,797,619	+		Pf6N2E2_5979	0.73	-0.1
6,797,619	+		Pf6N2E2_5979	0.73	-0.8
6,797,619	+		Pf6N2E2_5979	0.73	-0.0
6,797,620	-		Pf6N2E2_5979	0.73	+1.1
6,797,620	-		Pf6N2E2_5979	0.73	+1.8
6,797,635	-		Pf6N2E2_5979	0.75	-0.3
6,797,745	+		Pf6N2E2_5979	0.89	-1.7
6,797,745	+		Pf6N2E2_5979	0.89	+0.9
6,797,745	+		Pf6N2E2_5979	0.89	-0.5
6,797,746	-		Pf6N2E2_5979	0.89	-0.3
6,797,879	-				+0.5
6,797,908	+				-1.5
6,797,908	+				+0.6
6,797,909	-				+0.6