Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_5018

Experiment: D-Galactose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_5017 and Pf6N2E2_5018 are separated by 215 nucleotidesPf6N2E2_5018 and Pf6N2E2_5019 overlap by 21 nucleotidesPf6N2E2_5019 and Pf6N2E2_5020 overlap by 14 nucleotidesPf6N2E2_5020 and Pf6N2E2_5021 are separated by 185 nucleotides Pf6N2E2_5017 - Phosphate starvation-inducible protein PhoH, predicted ATPase, at 5,783,463 to 5,784,473 _5017 Pf6N2E2_5018 - tRNA-i(6)A37 methylthiotransferase, at 5,784,689 to 5,786,053 _5018 Pf6N2E2_5019 - hypothetical protein, at 5,786,033 to 5,786,164 _5019 Pf6N2E2_5020 - FIG00955339: hypothetical protein, at 5,786,151 to 5,786,480 _5020 Pf6N2E2_5021 - FOG: TPR repeat, SEL1 subfamily, at 5,786,666 to 5,787,220 _5021 Position (kb) 5784 5785 5786 5787Strain fitness (log2 ratio) -2 -1 0 1at 5783.807 kb on - strand, within Pf6N2E2_5017at 5783.807 kb on - strand, within Pf6N2E2_5017at 5783.807 kb on - strand, within Pf6N2E2_5017at 5783.807 kb on - strand, within Pf6N2E2_5017at 5783.807 kb on - strand, within Pf6N2E2_5017at 5783.891 kb on - strand, within Pf6N2E2_5017at 5783.906 kb on - strand, within Pf6N2E2_5017at 5783.906 kb on - strand, within Pf6N2E2_5017at 5784.041 kb on - strand, within Pf6N2E2_5017at 5784.041 kb on - strand, within Pf6N2E2_5017at 5784.041 kb on - strand, within Pf6N2E2_5017at 5784.107 kb on - strand, within Pf6N2E2_5017at 5784.107 kb on - strand, within Pf6N2E2_5017at 5784.107 kb on - strand, within Pf6N2E2_5017at 5784.502 kb on - strandat 5784.528 kb on - strandat 5784.548 kb on + strandat 5784.548 kb on + strandat 5784.634 kb on + strandat 5784.635 kb on - strandat 5784.635 kb on - strandat 5785.005 kb on + strand, within Pf6N2E2_5018at 5785.005 kb on + strand, within Pf6N2E2_5018at 5785.006 kb on - strand, within Pf6N2E2_5018at 5785.006 kb on - strand, within Pf6N2E2_5018at 5785.017 kb on + strand, within Pf6N2E2_5018at 5785.017 kb on + strand, within Pf6N2E2_5018at 5785.018 kb on - strand, within Pf6N2E2_5018at 5785.018 kb on - strand, within Pf6N2E2_5018at 5785.018 kb on - strand, within Pf6N2E2_5018at 5785.100 kb on - strand, within Pf6N2E2_5018at 5785.100 kb on - strand, within Pf6N2E2_5018at 5785.161 kb on + strand, within Pf6N2E2_5018at 5785.515 kb on + strand, within Pf6N2E2_5018at 5785.515 kb on + strand, within Pf6N2E2_5018at 5785.516 kb on - strand, within Pf6N2E2_5018at 5785.539 kb on + strand, within Pf6N2E2_5018at 5785.539 kb on + strand, within Pf6N2E2_5018at 5785.539 kb on + strand, within Pf6N2E2_5018at 5785.539 kb on + strand, within Pf6N2E2_5018at 5785.569 kb on + strand, within Pf6N2E2_5018at 5785.569 kb on + strand, within Pf6N2E2_5018at 5785.569 kb on + strand, within Pf6N2E2_5018at 5785.569 kb on + strand, within Pf6N2E2_5018at 5785.569 kb on + strand, within Pf6N2E2_5018at 5785.570 kb on - strand, within Pf6N2E2_5018at 5785.570 kb on - strand, within Pf6N2E2_5018at 5785.726 kb on - strand, within Pf6N2E2_5018at 5785.839 kb on + strand, within Pf6N2E2_5018at 5785.840 kb on - strand, within Pf6N2E2_5018at 5785.840 kb on - strand, within Pf6N2E2_5018at 5785.969 kb on - strandat 5786.001 kb on + strandat 5786.001 kb on + strandat 5786.001 kb on + strandat 5786.001 kb on + strandat 5786.054 kb on + strand, within Pf6N2E2_5019at 5786.054 kb on + strand, within Pf6N2E2_5019at 5786.055 kb on - strand, within Pf6N2E2_5019at 5786.055 kb on - strand, within Pf6N2E2_5019at 5786.055 kb on - strand, within Pf6N2E2_5019at 5786.056 kb on + strand, within Pf6N2E2_5019at 5786.056 kb on + strand, within Pf6N2E2_5019at 5786.056 kb on + strand, within Pf6N2E2_5019at 5786.056 kb on + strand, within Pf6N2E2_5019at 5786.056 kb on + strand, within Pf6N2E2_5019at 5786.056 kb on + strand, within Pf6N2E2_5019at 5786.056 kb on + strand, within Pf6N2E2_5019at 5786.057 kb on - strand, within Pf6N2E2_5019at 5786.057 kb on - strand, within Pf6N2E2_5019at 5786.100 kb on + strand, within Pf6N2E2_5019at 5786.100 kb on + strand, within Pf6N2E2_5019at 5786.101 kb on - strand, within Pf6N2E2_5019at 5786.101 kb on - strand, within Pf6N2E2_5019at 5786.105 kb on + strand, within Pf6N2E2_5019at 5786.105 kb on + strand, within Pf6N2E2_5019at 5786.105 kb on + strand, within Pf6N2E2_5019at 5786.105 kb on + strand, within Pf6N2E2_5019at 5786.105 kb on + strand, within Pf6N2E2_5019at 5786.105 kb on + strand, within Pf6N2E2_5019at 5786.105 kb on + strand, within Pf6N2E2_5019at 5786.106 kb on - strand, within Pf6N2E2_5019at 5786.106 kb on - strand, within Pf6N2E2_5019at 5786.106 kb on - strand, within Pf6N2E2_5019at 5786.107 kb on + strand, within Pf6N2E2_5019at 5786.107 kb on + strand, within Pf6N2E2_5019at 5786.107 kb on + strand, within Pf6N2E2_5019at 5786.107 kb on + strand, within Pf6N2E2_5019at 5786.107 kb on + strand, within Pf6N2E2_5019at 5786.108 kb on - strand, within Pf6N2E2_5019at 5786.108 kb on - strand, within Pf6N2E2_5019at 5786.108 kb on - strand, within Pf6N2E2_5019at 5786.108 kb on - strand, within Pf6N2E2_5019at 5786.108 kb on - strand, within Pf6N2E2_5019at 5786.108 kb on - strand, within Pf6N2E2_5019at 5786.175 kb on + strandat 5786.175 kb on + strandat 5786.175 kb on + strandat 5786.175 kb on + strandat 5786.175 kb on + strandat 5786.175 kb on + strandat 5786.176 kb on - strandat 5786.176 kb on - strandat 5786.176 kb on - strandat 5786.218 kb on - strand, within Pf6N2E2_5020at 5786.232 kb on + strand, within Pf6N2E2_5020at 5786.232 kb on + strand, within Pf6N2E2_5020at 5786.233 kb on - strand, within Pf6N2E2_5020at 5786.233 kb on - strand, within Pf6N2E2_5020at 5786.233 kb on - strand, within Pf6N2E2_5020at 5786.478 kb on + strandat 5786.478 kb on + strandat 5786.478 kb on + strandat 5786.478 kb on + strandat 5786.478 kb on + strandat 5786.478 kb on + strandat 5786.478 kb on + strandat 5786.479 kb on - strandat 5786.479 kb on - strandat 5786.479 kb on - strandat 5786.479 kb on - strandat 5786.479 kb on - strandat 5786.492 kb on + strandat 5786.492 kb on + strandat 5786.527 kb on - strandat 5786.527 kb on - strandat 5786.626 kb on + strandat 5786.627 kb on - strandat 5786.689 kb on + strandat 5786.689 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Galactose (C)
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5,783,807 - Pf6N2E2_5017 0.34 +0.4
5,783,807 - Pf6N2E2_5017 0.34 +0.2
5,783,807 - Pf6N2E2_5017 0.34 -0.0
5,783,807 - Pf6N2E2_5017 0.34 -0.1
5,783,807 - Pf6N2E2_5017 0.34 +1.2
5,783,891 - Pf6N2E2_5017 0.42 -0.9
5,783,906 - Pf6N2E2_5017 0.44 +0.4
5,783,906 - Pf6N2E2_5017 0.44 +0.8
5,784,041 - Pf6N2E2_5017 0.57 +0.2
5,784,041 - Pf6N2E2_5017 0.57 +1.1
5,784,041 - Pf6N2E2_5017 0.57 +0.7
5,784,107 - Pf6N2E2_5017 0.64 -0.5
5,784,107 - Pf6N2E2_5017 0.64 +0.9
5,784,107 - Pf6N2E2_5017 0.64 +1.6
5,784,502 - -0.2
5,784,528 - +0.6
5,784,548 + +0.8
5,784,548 + +0.1
5,784,634 + +0.1
5,784,635 - -0.2
5,784,635 - +0.0
5,785,005 + Pf6N2E2_5018 0.23 +0.5
5,785,005 + Pf6N2E2_5018 0.23 +0.1
5,785,006 - Pf6N2E2_5018 0.23 -1.4
5,785,006 - Pf6N2E2_5018 0.23 -1.8
5,785,017 + Pf6N2E2_5018 0.24 +0.1
5,785,017 + Pf6N2E2_5018 0.24 +1.0
5,785,018 - Pf6N2E2_5018 0.24 +0.2
5,785,018 - Pf6N2E2_5018 0.24 -0.1
5,785,018 - Pf6N2E2_5018 0.24 -0.2
5,785,100 - Pf6N2E2_5018 0.30 +0.6
5,785,100 - Pf6N2E2_5018 0.30 +1.0
5,785,161 + Pf6N2E2_5018 0.35 +1.2
5,785,515 + Pf6N2E2_5018 0.61 -0.3
5,785,515 + Pf6N2E2_5018 0.61 -1.1
5,785,516 - Pf6N2E2_5018 0.61 -0.5
5,785,539 + Pf6N2E2_5018 0.62 -0.5
5,785,539 + Pf6N2E2_5018 0.62 -0.6
5,785,539 + Pf6N2E2_5018 0.62 -0.2
5,785,539 + Pf6N2E2_5018 0.62 -0.6
5,785,569 + Pf6N2E2_5018 0.64 -1.4
5,785,569 + Pf6N2E2_5018 0.64 -1.9
5,785,569 + Pf6N2E2_5018 0.64 +0.5
5,785,569 + Pf6N2E2_5018 0.64 +0.9
5,785,569 + Pf6N2E2_5018 0.64 +0.3
5,785,570 - Pf6N2E2_5018 0.65 +0.4
5,785,570 - Pf6N2E2_5018 0.65 -0.4
5,785,726 - Pf6N2E2_5018 0.76 -0.5
5,785,839 + Pf6N2E2_5018 0.84 +1.2
5,785,840 - Pf6N2E2_5018 0.84 -1.4
5,785,840 - Pf6N2E2_5018 0.84 -0.9
5,785,969 - -1.6
5,786,001 + +1.3
5,786,001 + +0.0
5,786,001 + +0.0
5,786,001 + -1.9
5,786,054 + Pf6N2E2_5019 0.16 +1.0
5,786,054 + Pf6N2E2_5019 0.16 -0.2
5,786,055 - Pf6N2E2_5019 0.17 -0.0
5,786,055 - Pf6N2E2_5019 0.17 -1.1
5,786,055 - Pf6N2E2_5019 0.17 +0.5
5,786,056 + Pf6N2E2_5019 0.17 -0.1
5,786,056 + Pf6N2E2_5019 0.17 +0.7
5,786,056 + Pf6N2E2_5019 0.17 +0.5
5,786,056 + Pf6N2E2_5019 0.17 -0.5
5,786,056 + Pf6N2E2_5019 0.17 +0.6
5,786,056 + Pf6N2E2_5019 0.17 -0.8
5,786,056 + Pf6N2E2_5019 0.17 -0.8
5,786,057 - Pf6N2E2_5019 0.18 -1.0
5,786,057 - Pf6N2E2_5019 0.18 +0.5
5,786,100 + Pf6N2E2_5019 0.51 +1.3
5,786,100 + Pf6N2E2_5019 0.51 +0.4
5,786,101 - Pf6N2E2_5019 0.52 +1.2
5,786,101 - Pf6N2E2_5019 0.52 +1.1
5,786,105 + Pf6N2E2_5019 0.55 -0.3
5,786,105 + Pf6N2E2_5019 0.55 -0.5
5,786,105 + Pf6N2E2_5019 0.55 -2.1
5,786,105 + Pf6N2E2_5019 0.55 -0.1
5,786,105 + Pf6N2E2_5019 0.55 -1.4
5,786,105 + Pf6N2E2_5019 0.55 -1.1
5,786,105 + Pf6N2E2_5019 0.55 +0.5
5,786,106 - Pf6N2E2_5019 0.55 +0.0
5,786,106 - Pf6N2E2_5019 0.55 +0.8
5,786,106 - Pf6N2E2_5019 0.55 -0.5
5,786,107 + Pf6N2E2_5019 0.56 -1.8
5,786,107 + Pf6N2E2_5019 0.56 -0.2
5,786,107 + Pf6N2E2_5019 0.56 +1.7
5,786,107 + Pf6N2E2_5019 0.56 -0.0
5,786,107 + Pf6N2E2_5019 0.56 +1.0
5,786,108 - Pf6N2E2_5019 0.57 -0.5
5,786,108 - Pf6N2E2_5019 0.57 +1.2
5,786,108 - Pf6N2E2_5019 0.57 -0.2
5,786,108 - Pf6N2E2_5019 0.57 -0.9
5,786,108 - Pf6N2E2_5019 0.57 -0.0
5,786,108 - Pf6N2E2_5019 0.57 -0.8
5,786,175 + -1.0
5,786,175 + -0.5
5,786,175 + -0.9
5,786,175 + -0.8
5,786,175 + -2.4
5,786,175 + -0.5
5,786,176 - -0.8
5,786,176 - +1.0
5,786,176 - +0.4
5,786,218 - Pf6N2E2_5020 0.20 -0.2
5,786,232 + Pf6N2E2_5020 0.25 -0.1
5,786,232 + Pf6N2E2_5020 0.25 +0.0
5,786,233 - Pf6N2E2_5020 0.25 -0.9
5,786,233 - Pf6N2E2_5020 0.25 +0.8
5,786,233 - Pf6N2E2_5020 0.25 -0.7
5,786,478 + -0.1
5,786,478 + +1.2
5,786,478 + +0.5
5,786,478 + -0.0
5,786,478 + -0.5
5,786,478 + +0.3
5,786,478 + -0.7
5,786,479 - -0.6
5,786,479 - -0.9
5,786,479 - +0.6
5,786,479 - +0.1
5,786,479 - +1.1
5,786,492 + +0.6
5,786,492 + -0.9
5,786,527 - +0.4
5,786,527 - +1.2
5,786,626 + -0.1
5,786,627 - -0.2
5,786,689 + -0.2
5,786,689 + -0.5

Or see this region's nucleotide sequence