Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_487

Experiment: D-Galactose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_485 and Pf6N2E2_486 overlap by 1 nucleotidesPf6N2E2_486 and Pf6N2E2_487 are separated by 75 nucleotidesPf6N2E2_487 and Pf6N2E2_488 are separated by 58 nucleotides Pf6N2E2_485 - TRAP-type C4-dicarboxylate transport system, large permease component, at 551,539 to 552,819 _485 Pf6N2E2_486 - TRAP-type C4-dicarboxylate transport system, small permease component, at 552,819 to 553,346 _486 Pf6N2E2_487 - TRAP-type C4-dicarboxylate transport system, periplasmic component, at 553,422 to 554,390 _487 Pf6N2E2_488 - Gluconolactonase (EC 3.1.1.17), at 554,449 to 555,354 _488 Position (kb) 553 554 555Strain fitness (log2 ratio) -1 0 1 2at 552.566 kb on - strand, within Pf6N2E2_485at 552.787 kb on + strandat 552.946 kb on + strand, within Pf6N2E2_486at 552.946 kb on + strand, within Pf6N2E2_486at 552.946 kb on + strand, within Pf6N2E2_486at 552.946 kb on + strand, within Pf6N2E2_486at 552.946 kb on + strand, within Pf6N2E2_486at 552.946 kb on + strand, within Pf6N2E2_486at 552.947 kb on - strand, within Pf6N2E2_486at 552.947 kb on - strand, within Pf6N2E2_486at 552.947 kb on - strand, within Pf6N2E2_486at 552.947 kb on - strand, within Pf6N2E2_486at 553.056 kb on + strand, within Pf6N2E2_486at 553.056 kb on + strand, within Pf6N2E2_486at 553.056 kb on + strand, within Pf6N2E2_486at 553.057 kb on - strand, within Pf6N2E2_486at 553.057 kb on - strand, within Pf6N2E2_486at 553.057 kb on - strand, within Pf6N2E2_486at 553.057 kb on - strand, within Pf6N2E2_486at 553.169 kb on + strand, within Pf6N2E2_486at 553.169 kb on + strand, within Pf6N2E2_486at 553.170 kb on - strand, within Pf6N2E2_486at 553.173 kb on + strand, within Pf6N2E2_486at 553.173 kb on + strand, within Pf6N2E2_486at 553.173 kb on + strand, within Pf6N2E2_486at 553.174 kb on - strand, within Pf6N2E2_486at 553.309 kb on + strandat 553.309 kb on + strandat 553.325 kb on + strandat 553.325 kb on + strandat 553.326 kb on - strandat 553.359 kb on + strandat 553.359 kb on + strandat 553.424 kb on - strandat 553.440 kb on - strandat 553.501 kb on + strandat 553.501 kb on + strandat 553.501 kb on + strandat 553.502 kb on - strandat 553.502 kb on - strandat 553.502 kb on - strandat 553.717 kb on + strand, within Pf6N2E2_487at 553.717 kb on + strand, within Pf6N2E2_487at 553.717 kb on + strand, within Pf6N2E2_487at 553.717 kb on + strand, within Pf6N2E2_487at 553.718 kb on - strand, within Pf6N2E2_487at 553.718 kb on - strand, within Pf6N2E2_487at 553.718 kb on - strand, within Pf6N2E2_487at 553.720 kb on + strand, within Pf6N2E2_487at 553.720 kb on + strand, within Pf6N2E2_487at 553.720 kb on + strand, within Pf6N2E2_487at 553.720 kb on + strand, within Pf6N2E2_487at 553.720 kb on + strand, within Pf6N2E2_487at 553.721 kb on - strand, within Pf6N2E2_487at 553.721 kb on - strand, within Pf6N2E2_487at 553.735 kb on + strand, within Pf6N2E2_487at 554.193 kb on + strand, within Pf6N2E2_487at 554.194 kb on - strand, within Pf6N2E2_487at 554.210 kb on - strand, within Pf6N2E2_487at 554.375 kb on + strandat 554.375 kb on + strandat 554.376 kb on - strandat 554.376 kb on - strandat 554.376 kb on - strandat 554.711 kb on + strand, within Pf6N2E2_488at 554.712 kb on - strand, within Pf6N2E2_488at 554.814 kb on - strand, within Pf6N2E2_488at 554.861 kb on + strand, within Pf6N2E2_488at 554.861 kb on + strand, within Pf6N2E2_488at 554.861 kb on + strand, within Pf6N2E2_488at 554.861 kb on + strand, within Pf6N2E2_488at 554.861 kb on + strand, within Pf6N2E2_488at 554.861 kb on + strand, within Pf6N2E2_488at 554.862 kb on - strand, within Pf6N2E2_488at 554.960 kb on + strand, within Pf6N2E2_488at 554.961 kb on - strand, within Pf6N2E2_488at 554.961 kb on - strand, within Pf6N2E2_488at 554.961 kb on - strand, within Pf6N2E2_488at 555.231 kb on + strand, within Pf6N2E2_488at 555.231 kb on + strand, within Pf6N2E2_488at 555.276 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Galactose (C)
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552,566 - Pf6N2E2_485 0.80 +0.5
552,787 + +0.6
552,946 + Pf6N2E2_486 0.24 -1.5
552,946 + Pf6N2E2_486 0.24 -0.5
552,946 + Pf6N2E2_486 0.24 +0.1
552,946 + Pf6N2E2_486 0.24 -0.5
552,946 + Pf6N2E2_486 0.24 +0.4
552,946 + Pf6N2E2_486 0.24 +0.5
552,947 - Pf6N2E2_486 0.24 +1.0
552,947 - Pf6N2E2_486 0.24 -0.5
552,947 - Pf6N2E2_486 0.24 -0.2
552,947 - Pf6N2E2_486 0.24 +0.7
553,056 + Pf6N2E2_486 0.45 +0.2
553,056 + Pf6N2E2_486 0.45 +0.5
553,056 + Pf6N2E2_486 0.45 +0.3
553,057 - Pf6N2E2_486 0.45 +1.0
553,057 - Pf6N2E2_486 0.45 -0.3
553,057 - Pf6N2E2_486 0.45 +1.1
553,057 - Pf6N2E2_486 0.45 +0.5
553,169 + Pf6N2E2_486 0.66 -0.5
553,169 + Pf6N2E2_486 0.66 -0.8
553,170 - Pf6N2E2_486 0.66 +0.5
553,173 + Pf6N2E2_486 0.67 -0.3
553,173 + Pf6N2E2_486 0.67 -0.4
553,173 + Pf6N2E2_486 0.67 -0.3
553,174 - Pf6N2E2_486 0.67 -0.6
553,309 + -1.3
553,309 + +0.7
553,325 + -0.0
553,325 + +0.1
553,326 - -0.7
553,359 + -0.7
553,359 + -0.3
553,424 - +0.8
553,440 - +0.7
553,501 + -0.4
553,501 + +0.4
553,501 + +0.2
553,502 - +0.5
553,502 - -0.1
553,502 - +0.1
553,717 + Pf6N2E2_487 0.30 -0.4
553,717 + Pf6N2E2_487 0.30 -1.0
553,717 + Pf6N2E2_487 0.30 +2.1
553,717 + Pf6N2E2_487 0.30 +0.3
553,718 - Pf6N2E2_487 0.31 +0.4
553,718 - Pf6N2E2_487 0.31 +1.2
553,718 - Pf6N2E2_487 0.31 +1.3
553,720 + Pf6N2E2_487 0.31 +0.5
553,720 + Pf6N2E2_487 0.31 -0.5
553,720 + Pf6N2E2_487 0.31 +1.7
553,720 + Pf6N2E2_487 0.31 +0.7
553,720 + Pf6N2E2_487 0.31 +1.1
553,721 - Pf6N2E2_487 0.31 +0.5
553,721 - Pf6N2E2_487 0.31 +1.5
553,735 + Pf6N2E2_487 0.32 +0.7
554,193 + Pf6N2E2_487 0.80 +1.0
554,194 - Pf6N2E2_487 0.80 +1.0
554,210 - Pf6N2E2_487 0.81 +1.4
554,375 + +0.7
554,375 + -0.6
554,376 - +0.5
554,376 - +0.7
554,376 - -0.5
554,711 + Pf6N2E2_488 0.29 +0.1
554,712 - Pf6N2E2_488 0.29 +1.5
554,814 - Pf6N2E2_488 0.40 +1.4
554,861 + Pf6N2E2_488 0.45 -1.3
554,861 + Pf6N2E2_488 0.45 -1.6
554,861 + Pf6N2E2_488 0.45 +1.2
554,861 + Pf6N2E2_488 0.45 -0.0
554,861 + Pf6N2E2_488 0.45 +1.8
554,861 + Pf6N2E2_488 0.45 +0.5
554,862 - Pf6N2E2_488 0.46 -0.8
554,960 + Pf6N2E2_488 0.56 -0.3
554,961 - Pf6N2E2_488 0.57 +0.0
554,961 - Pf6N2E2_488 0.57 -0.6
554,961 - Pf6N2E2_488 0.57 +0.4
555,231 + Pf6N2E2_488 0.86 -0.1
555,231 + Pf6N2E2_488 0.86 +1.5
555,276 - -0.5

Or see this region's nucleotide sequence