Experiment: D-Galactose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_477 and Pf6N2E2_478 are separated by 283 nucleotides Pf6N2E2_478 and Pf6N2E2_479 are separated by 3 nucleotides
Pf6N2E2_477 - Branched-chain amino acid aminotransferase (EC 2.6.1.42), at 542,197 to 543,216
_477
Pf6N2E2_478 - Dihydrolipoyl dehydrogenase (EC 1.8.1.4) (from data) , at 543,500 to 544,885
_478
Pf6N2E2_479 - Dihydrolipoyllysine-residue (2-methylpropanoyl)transferase (EC 2.3.1.168) (from data) , at 544,889 to 546,160
_479
Position (kb)
543
544
545 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 542.652 kb on - strand, within Pf6N2E2_477 at 542.747 kb on + strand, within Pf6N2E2_477 at 542.843 kb on + strand, within Pf6N2E2_477 at 543.173 kb on + strand at 543.174 kb on - strand at 543.174 kb on - strand at 543.226 kb on + strand at 543.226 kb on + strand at 543.227 kb on - strand at 543.227 kb on - strand at 543.288 kb on + strand at 543.288 kb on + strand at 543.288 kb on + strand at 543.288 kb on + strand at 543.288 kb on + strand at 543.288 kb on + strand at 543.289 kb on - strand at 543.289 kb on - strand at 543.289 kb on - strand at 543.289 kb on - strand at 543.289 kb on - strand at 543.289 kb on - strand at 543.289 kb on - strand at 543.289 kb on - strand at 543.289 kb on - strand at 543.501 kb on + strand at 544.195 kb on - strand, within Pf6N2E2_478 at 544.195 kb on - strand, within Pf6N2E2_478 at 544.341 kb on + strand, within Pf6N2E2_478 at 544.342 kb on - strand, within Pf6N2E2_478 at 544.830 kb on + strand at 544.891 kb on - strand at 545.075 kb on + strand, within Pf6N2E2_479 at 545.497 kb on - strand, within Pf6N2E2_479 at 545.599 kb on - strand, within Pf6N2E2_479 at 545.599 kb on - strand, within Pf6N2E2_479 at 545.643 kb on + strand, within Pf6N2E2_479 at 545.644 kb on - strand, within Pf6N2E2_479 at 545.644 kb on - strand, within Pf6N2E2_479
Per-strain Table
Position Strand Gene LocusTag Fraction D-Galactose (C) remove 542,652 - Pf6N2E2_477 0.45 +2.3 542,747 + Pf6N2E2_477 0.54 -0.4 542,843 + Pf6N2E2_477 0.63 -1.1 543,173 + -0.2 543,174 - -1.7 543,174 - -1.3 543,226 + -0.9 543,226 + -0.6 543,227 - -0.6 543,227 - +0.1 543,288 + -2.2 543,288 + -0.0 543,288 + -0.0 543,288 + -0.0 543,288 + +0.2 543,288 + +1.6 543,289 - -1.4 543,289 - -1.3 543,289 - -0.0 543,289 - +0.8 543,289 - -0.4 543,289 - -1.3 543,289 - +0.9 543,289 - -0.1 543,289 - +0.3 543,501 + +0.8 544,195 - Pf6N2E2_478 0.50 +0.1 544,195 - Pf6N2E2_478 0.50 +0.5 544,341 + Pf6N2E2_478 0.61 -1.8 544,342 - Pf6N2E2_478 0.61 +0.1 544,830 + -0.9 544,891 - -1.0 545,075 + Pf6N2E2_479 0.15 +0.6 545,497 - Pf6N2E2_479 0.48 +0.4 545,599 - Pf6N2E2_479 0.56 -0.8 545,599 - Pf6N2E2_479 0.56 -0.1 545,643 + Pf6N2E2_479 0.59 -0.1 545,644 - Pf6N2E2_479 0.59 +1.4 545,644 - Pf6N2E2_479 0.59 +0.1
Or see this region's nucleotide sequence