Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_4772

Experiment: D-Galactose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_4771 and Pf6N2E2_4772 overlap by 35 nucleotidesPf6N2E2_4772 and Pf6N2E2_4773 overlap by 29 nucleotidesPf6N2E2_4773 and Pf6N2E2_4774 overlap by 4 nucleotides Pf6N2E2_4771 - Coenzyme PQQ synthesis protein F (EC 3.4.99.-), at 5,511,362 to 5,513,191 _4771 Pf6N2E2_4772 - Coenzyme PQQ synthesis protein E, at 5,513,157 to 5,514,326 _4772 Pf6N2E2_4773 - Coenzyme PQQ synthesis protein D, at 5,514,298 to 5,514,573 _4773 Pf6N2E2_4774 - Pyrroloquinoline-quinone synthase (EC 1.3.3.11), at 5,514,570 to 5,515,322 _4774 Position (kb) 5513 5514 5515Strain fitness (log2 ratio) -1 0 1 2 3 4at 5512.189 kb on + strand, within Pf6N2E2_4771at 5512.189 kb on + strand, within Pf6N2E2_4771at 5512.189 kb on + strand, within Pf6N2E2_4771at 5512.189 kb on + strand, within Pf6N2E2_4771at 5512.245 kb on + strand, within Pf6N2E2_4771at 5512.245 kb on + strand, within Pf6N2E2_4771at 5512.245 kb on + strand, within Pf6N2E2_4771at 5512.246 kb on - strand, within Pf6N2E2_4771at 5512.371 kb on + strand, within Pf6N2E2_4771at 5512.371 kb on + strand, within Pf6N2E2_4771at 5512.371 kb on + strand, within Pf6N2E2_4771at 5512.371 kb on + strand, within Pf6N2E2_4771at 5512.372 kb on - strand, within Pf6N2E2_4771at 5512.372 kb on - strand, within Pf6N2E2_4771at 5512.372 kb on - strand, within Pf6N2E2_4771at 5512.372 kb on - strand, within Pf6N2E2_4771at 5512.478 kb on + strand, within Pf6N2E2_4771at 5512.478 kb on + strand, within Pf6N2E2_4771at 5512.479 kb on - strand, within Pf6N2E2_4771at 5512.518 kb on + strand, within Pf6N2E2_4771at 5512.519 kb on - strand, within Pf6N2E2_4771at 5512.811 kb on + strand, within Pf6N2E2_4771at 5512.811 kb on + strand, within Pf6N2E2_4771at 5512.899 kb on + strand, within Pf6N2E2_4771at 5512.900 kb on - strand, within Pf6N2E2_4771at 5512.900 kb on - strand, within Pf6N2E2_4771at 5512.900 kb on - strand, within Pf6N2E2_4771at 5512.974 kb on + strand, within Pf6N2E2_4771at 5512.974 kb on + strand, within Pf6N2E2_4771at 5512.975 kb on - strand, within Pf6N2E2_4771at 5512.975 kb on - strand, within Pf6N2E2_4771at 5513.578 kb on + strand, within Pf6N2E2_4772at 5513.578 kb on + strand, within Pf6N2E2_4772at 5513.578 kb on + strand, within Pf6N2E2_4772at 5513.578 kb on + strand, within Pf6N2E2_4772at 5513.578 kb on + strand, within Pf6N2E2_4772at 5513.578 kb on + strand, within Pf6N2E2_4772at 5513.667 kb on + strand, within Pf6N2E2_4772at 5513.722 kb on + strand, within Pf6N2E2_4772at 5513.722 kb on + strand, within Pf6N2E2_4772at 5514.028 kb on + strand, within Pf6N2E2_4772at 5514.028 kb on + strand, within Pf6N2E2_4772at 5514.028 kb on + strand, within Pf6N2E2_4772at 5514.029 kb on - strand, within Pf6N2E2_4772at 5514.029 kb on - strand, within Pf6N2E2_4772at 5514.029 kb on - strand, within Pf6N2E2_4772at 5514.029 kb on - strand, within Pf6N2E2_4772at 5514.029 kb on - strand, within Pf6N2E2_4772at 5514.208 kb on + strand, within Pf6N2E2_4772at 5514.232 kb on + strandat 5514.233 kb on - strandat 5514.486 kb on - strand, within Pf6N2E2_4773at 5514.573 kb on + strandat 5514.573 kb on + strandat 5514.573 kb on + strandat 5514.573 kb on + strandat 5514.573 kb on + strandat 5514.574 kb on - strandat 5514.574 kb on - strandat 5514.574 kb on - strandat 5514.574 kb on - strandat 5514.574 kb on - strandat 5514.578 kb on + strandat 5514.578 kb on + strandat 5514.579 kb on - strandat 5514.619 kb on + strandat 5514.641 kb on - strandat 5514.733 kb on + strand, within Pf6N2E2_4774at 5514.733 kb on + strand, within Pf6N2E2_4774at 5514.734 kb on - strand, within Pf6N2E2_4774at 5514.802 kb on + strand, within Pf6N2E2_4774at 5514.802 kb on + strand, within Pf6N2E2_4774at 5514.803 kb on - strand, within Pf6N2E2_4774at 5514.803 kb on - strand, within Pf6N2E2_4774at 5514.944 kb on - strand, within Pf6N2E2_4774at 5515.158 kb on - strand, within Pf6N2E2_4774at 5515.168 kb on + strand, within Pf6N2E2_4774at 5515.168 kb on + strand, within Pf6N2E2_4774at 5515.225 kb on + strand, within Pf6N2E2_4774at 5515.225 kb on + strand, within Pf6N2E2_4774at 5515.225 kb on + strand, within Pf6N2E2_4774at 5515.225 kb on + strand, within Pf6N2E2_4774at 5515.225 kb on + strand, within Pf6N2E2_4774at 5515.225 kb on + strand, within Pf6N2E2_4774at 5515.225 kb on + strand, within Pf6N2E2_4774at 5515.225 kb on + strand, within Pf6N2E2_4774at 5515.225 kb on + strand, within Pf6N2E2_4774at 5515.226 kb on - strand, within Pf6N2E2_4774at 5515.226 kb on - strand, within Pf6N2E2_4774at 5515.226 kb on - strand, within Pf6N2E2_4774at 5515.226 kb on - strand, within Pf6N2E2_4774at 5515.226 kb on - strand, within Pf6N2E2_4774at 5515.226 kb on - strand, within Pf6N2E2_4774at 5515.226 kb on - strand, within Pf6N2E2_4774at 5515.226 kb on - strand, within Pf6N2E2_4774at 5515.226 kb on - strand, within Pf6N2E2_4774at 5515.241 kb on - strand, within Pf6N2E2_4774at 5515.262 kb on - strandat 5515.262 kb on - strandat 5515.262 kb on - strandat 5515.262 kb on - strandat 5515.262 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Galactose (C)
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5,512,189 + Pf6N2E2_4771 0.45 -0.3
5,512,189 + Pf6N2E2_4771 0.45 +0.6
5,512,189 + Pf6N2E2_4771 0.45 -0.3
5,512,189 + Pf6N2E2_4771 0.45 -1.0
5,512,245 + Pf6N2E2_4771 0.48 +0.9
5,512,245 + Pf6N2E2_4771 0.48 +0.2
5,512,245 + Pf6N2E2_4771 0.48 -0.5
5,512,246 - Pf6N2E2_4771 0.48 +0.2
5,512,371 + Pf6N2E2_4771 0.55 +0.7
5,512,371 + Pf6N2E2_4771 0.55 +0.1
5,512,371 + Pf6N2E2_4771 0.55 +1.2
5,512,371 + Pf6N2E2_4771 0.55 +0.2
5,512,372 - Pf6N2E2_4771 0.55 -0.4
5,512,372 - Pf6N2E2_4771 0.55 +0.8
5,512,372 - Pf6N2E2_4771 0.55 +0.5
5,512,372 - Pf6N2E2_4771 0.55 +0.4
5,512,478 + Pf6N2E2_4771 0.61 +0.6
5,512,478 + Pf6N2E2_4771 0.61 -0.0
5,512,479 - Pf6N2E2_4771 0.61 -0.3
5,512,518 + Pf6N2E2_4771 0.63 +0.1
5,512,519 - Pf6N2E2_4771 0.63 +0.8
5,512,811 + Pf6N2E2_4771 0.79 -0.2
5,512,811 + Pf6N2E2_4771 0.79 -0.1
5,512,899 + Pf6N2E2_4771 0.84 -0.1
5,512,900 - Pf6N2E2_4771 0.84 +0.1
5,512,900 - Pf6N2E2_4771 0.84 +0.7
5,512,900 - Pf6N2E2_4771 0.84 +0.7
5,512,974 + Pf6N2E2_4771 0.88 +0.9
5,512,974 + Pf6N2E2_4771 0.88 -1.0
5,512,975 - Pf6N2E2_4771 0.88 -0.1
5,512,975 - Pf6N2E2_4771 0.88 -0.2
5,513,578 + Pf6N2E2_4772 0.36 +3.1
5,513,578 + Pf6N2E2_4772 0.36 +3.5
5,513,578 + Pf6N2E2_4772 0.36 +3.7
5,513,578 + Pf6N2E2_4772 0.36 +3.5
5,513,578 + Pf6N2E2_4772 0.36 +3.0
5,513,578 + Pf6N2E2_4772 0.36 +3.8
5,513,667 + Pf6N2E2_4772 0.44 +3.5
5,513,722 + Pf6N2E2_4772 0.48 +3.6
5,513,722 + Pf6N2E2_4772 0.48 +2.6
5,514,028 + Pf6N2E2_4772 0.74 +3.2
5,514,028 + Pf6N2E2_4772 0.74 +2.9
5,514,028 + Pf6N2E2_4772 0.74 +3.4
5,514,029 - Pf6N2E2_4772 0.75 +3.1
5,514,029 - Pf6N2E2_4772 0.75 +2.5
5,514,029 - Pf6N2E2_4772 0.75 +3.7
5,514,029 - Pf6N2E2_4772 0.75 +2.7
5,514,029 - Pf6N2E2_4772 0.75 +2.7
5,514,208 + Pf6N2E2_4772 0.90 +3.5
5,514,232 + +3.3
5,514,233 - +2.4
5,514,486 - Pf6N2E2_4773 0.68 +1.4
5,514,573 + +3.3
5,514,573 + +4.1
5,514,573 + +2.9
5,514,573 + +3.7
5,514,573 + +3.6
5,514,574 - +0.3
5,514,574 - -0.0
5,514,574 - +1.1
5,514,574 - +1.3
5,514,574 - +0.8
5,514,578 + +3.9
5,514,578 + +3.7
5,514,579 - +1.9
5,514,619 + +3.8
5,514,641 - +2.7
5,514,733 + Pf6N2E2_4774 0.22 +2.1
5,514,733 + Pf6N2E2_4774 0.22 +2.9
5,514,734 - Pf6N2E2_4774 0.22 +2.5
5,514,802 + Pf6N2E2_4774 0.31 +2.5
5,514,802 + Pf6N2E2_4774 0.31 +4.1
5,514,803 - Pf6N2E2_4774 0.31 +1.2
5,514,803 - Pf6N2E2_4774 0.31 +2.8
5,514,944 - Pf6N2E2_4774 0.50 +2.1
5,515,158 - Pf6N2E2_4774 0.78 +2.1
5,515,168 + Pf6N2E2_4774 0.79 +3.3
5,515,168 + Pf6N2E2_4774 0.79 +2.2
5,515,225 + Pf6N2E2_4774 0.87 +3.9
5,515,225 + Pf6N2E2_4774 0.87 +3.3
5,515,225 + Pf6N2E2_4774 0.87 +4.3
5,515,225 + Pf6N2E2_4774 0.87 +4.0
5,515,225 + Pf6N2E2_4774 0.87 +3.5
5,515,225 + Pf6N2E2_4774 0.87 +2.9
5,515,225 + Pf6N2E2_4774 0.87 +3.2
5,515,225 + Pf6N2E2_4774 0.87 +4.0
5,515,225 + Pf6N2E2_4774 0.87 +2.7
5,515,226 - Pf6N2E2_4774 0.87 +2.5
5,515,226 - Pf6N2E2_4774 0.87 +2.9
5,515,226 - Pf6N2E2_4774 0.87 +2.0
5,515,226 - Pf6N2E2_4774 0.87 +2.0
5,515,226 - Pf6N2E2_4774 0.87 +1.9
5,515,226 - Pf6N2E2_4774 0.87 +2.1
5,515,226 - Pf6N2E2_4774 0.87 +1.6
5,515,226 - Pf6N2E2_4774 0.87 +1.6
5,515,226 - Pf6N2E2_4774 0.87 +1.4
5,515,241 - Pf6N2E2_4774 0.89 +3.3
5,515,262 - +2.1
5,515,262 - +2.9
5,515,262 - +2.7
5,515,262 - +2.4
5,515,262 - +2.0

Or see this region's nucleotide sequence