Experiment: D-Galactose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_4771 and Pf6N2E2_4772 overlap by 35 nucleotides Pf6N2E2_4772 and Pf6N2E2_4773 overlap by 29 nucleotides Pf6N2E2_4773 and Pf6N2E2_4774 overlap by 4 nucleotides
Pf6N2E2_4771 - Coenzyme PQQ synthesis protein F (EC 3.4.99.-), at 5,511,362 to 5,513,191
_4771
Pf6N2E2_4772 - Coenzyme PQQ synthesis protein E, at 5,513,157 to 5,514,326
_4772
Pf6N2E2_4773 - Coenzyme PQQ synthesis protein D, at 5,514,298 to 5,514,573
_4773
Pf6N2E2_4774 - Pyrroloquinoline-quinone synthase (EC 1.3.3.11), at 5,514,570 to 5,515,322
_4774
Position (kb)
5513
5514
5515 Strain fitness (log2 ratio)
-1
0
1
2
3
4 at 5512.189 kb on + strand, within Pf6N2E2_4771 at 5512.189 kb on + strand, within Pf6N2E2_4771 at 5512.189 kb on + strand, within Pf6N2E2_4771 at 5512.189 kb on + strand, within Pf6N2E2_4771 at 5512.245 kb on + strand, within Pf6N2E2_4771 at 5512.245 kb on + strand, within Pf6N2E2_4771 at 5512.245 kb on + strand, within Pf6N2E2_4771 at 5512.246 kb on - strand, within Pf6N2E2_4771 at 5512.371 kb on + strand, within Pf6N2E2_4771 at 5512.371 kb on + strand, within Pf6N2E2_4771 at 5512.371 kb on + strand, within Pf6N2E2_4771 at 5512.371 kb on + strand, within Pf6N2E2_4771 at 5512.372 kb on - strand, within Pf6N2E2_4771 at 5512.372 kb on - strand, within Pf6N2E2_4771 at 5512.372 kb on - strand, within Pf6N2E2_4771 at 5512.372 kb on - strand, within Pf6N2E2_4771 at 5512.478 kb on + strand, within Pf6N2E2_4771 at 5512.478 kb on + strand, within Pf6N2E2_4771 at 5512.479 kb on - strand, within Pf6N2E2_4771 at 5512.518 kb on + strand, within Pf6N2E2_4771 at 5512.519 kb on - strand, within Pf6N2E2_4771 at 5512.811 kb on + strand, within Pf6N2E2_4771 at 5512.811 kb on + strand, within Pf6N2E2_4771 at 5512.899 kb on + strand, within Pf6N2E2_4771 at 5512.900 kb on - strand, within Pf6N2E2_4771 at 5512.900 kb on - strand, within Pf6N2E2_4771 at 5512.900 kb on - strand, within Pf6N2E2_4771 at 5512.974 kb on + strand, within Pf6N2E2_4771 at 5512.974 kb on + strand, within Pf6N2E2_4771 at 5512.975 kb on - strand, within Pf6N2E2_4771 at 5512.975 kb on - strand, within Pf6N2E2_4771 at 5513.578 kb on + strand, within Pf6N2E2_4772 at 5513.578 kb on + strand, within Pf6N2E2_4772 at 5513.578 kb on + strand, within Pf6N2E2_4772 at 5513.578 kb on + strand, within Pf6N2E2_4772 at 5513.578 kb on + strand, within Pf6N2E2_4772 at 5513.578 kb on + strand, within Pf6N2E2_4772 at 5513.667 kb on + strand, within Pf6N2E2_4772 at 5513.722 kb on + strand, within Pf6N2E2_4772 at 5513.722 kb on + strand, within Pf6N2E2_4772 at 5514.028 kb on + strand, within Pf6N2E2_4772 at 5514.028 kb on + strand, within Pf6N2E2_4772 at 5514.028 kb on + strand, within Pf6N2E2_4772 at 5514.029 kb on - strand, within Pf6N2E2_4772 at 5514.029 kb on - strand, within Pf6N2E2_4772 at 5514.029 kb on - strand, within Pf6N2E2_4772 at 5514.029 kb on - strand, within Pf6N2E2_4772 at 5514.029 kb on - strand, within Pf6N2E2_4772 at 5514.208 kb on + strand, within Pf6N2E2_4772 at 5514.232 kb on + strand at 5514.233 kb on - strand at 5514.486 kb on - strand, within Pf6N2E2_4773 at 5514.573 kb on + strand at 5514.573 kb on + strand at 5514.573 kb on + strand at 5514.573 kb on + strand at 5514.573 kb on + strand at 5514.574 kb on - strand at 5514.574 kb on - strand at 5514.574 kb on - strand at 5514.574 kb on - strand at 5514.574 kb on - strand at 5514.578 kb on + strand at 5514.578 kb on + strand at 5514.579 kb on - strand at 5514.619 kb on + strand at 5514.641 kb on - strand at 5514.733 kb on + strand, within Pf6N2E2_4774 at 5514.733 kb on + strand, within Pf6N2E2_4774 at 5514.734 kb on - strand, within Pf6N2E2_4774 at 5514.802 kb on + strand, within Pf6N2E2_4774 at 5514.802 kb on + strand, within Pf6N2E2_4774 at 5514.803 kb on - strand, within Pf6N2E2_4774 at 5514.803 kb on - strand, within Pf6N2E2_4774 at 5514.944 kb on - strand, within Pf6N2E2_4774 at 5515.158 kb on - strand, within Pf6N2E2_4774 at 5515.168 kb on + strand, within Pf6N2E2_4774 at 5515.168 kb on + strand, within Pf6N2E2_4774 at 5515.225 kb on + strand, within Pf6N2E2_4774 at 5515.225 kb on + strand, within Pf6N2E2_4774 at 5515.225 kb on + strand, within Pf6N2E2_4774 at 5515.225 kb on + strand, within Pf6N2E2_4774 at 5515.225 kb on + strand, within Pf6N2E2_4774 at 5515.225 kb on + strand, within Pf6N2E2_4774 at 5515.225 kb on + strand, within Pf6N2E2_4774 at 5515.225 kb on + strand, within Pf6N2E2_4774 at 5515.225 kb on + strand, within Pf6N2E2_4774 at 5515.226 kb on - strand, within Pf6N2E2_4774 at 5515.226 kb on - strand, within Pf6N2E2_4774 at 5515.226 kb on - strand, within Pf6N2E2_4774 at 5515.226 kb on - strand, within Pf6N2E2_4774 at 5515.226 kb on - strand, within Pf6N2E2_4774 at 5515.226 kb on - strand, within Pf6N2E2_4774 at 5515.226 kb on - strand, within Pf6N2E2_4774 at 5515.226 kb on - strand, within Pf6N2E2_4774 at 5515.226 kb on - strand, within Pf6N2E2_4774 at 5515.241 kb on - strand, within Pf6N2E2_4774 at 5515.262 kb on - strand at 5515.262 kb on - strand at 5515.262 kb on - strand at 5515.262 kb on - strand at 5515.262 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Galactose (C) remove 5,512,189 + Pf6N2E2_4771 0.45 -0.3 5,512,189 + Pf6N2E2_4771 0.45 +0.6 5,512,189 + Pf6N2E2_4771 0.45 -0.3 5,512,189 + Pf6N2E2_4771 0.45 -1.0 5,512,245 + Pf6N2E2_4771 0.48 +0.9 5,512,245 + Pf6N2E2_4771 0.48 +0.2 5,512,245 + Pf6N2E2_4771 0.48 -0.5 5,512,246 - Pf6N2E2_4771 0.48 +0.2 5,512,371 + Pf6N2E2_4771 0.55 +0.7 5,512,371 + Pf6N2E2_4771 0.55 +0.1 5,512,371 + Pf6N2E2_4771 0.55 +1.2 5,512,371 + Pf6N2E2_4771 0.55 +0.2 5,512,372 - Pf6N2E2_4771 0.55 -0.4 5,512,372 - Pf6N2E2_4771 0.55 +0.8 5,512,372 - Pf6N2E2_4771 0.55 +0.5 5,512,372 - Pf6N2E2_4771 0.55 +0.4 5,512,478 + Pf6N2E2_4771 0.61 +0.6 5,512,478 + Pf6N2E2_4771 0.61 -0.0 5,512,479 - Pf6N2E2_4771 0.61 -0.3 5,512,518 + Pf6N2E2_4771 0.63 +0.1 5,512,519 - Pf6N2E2_4771 0.63 +0.8 5,512,811 + Pf6N2E2_4771 0.79 -0.2 5,512,811 + Pf6N2E2_4771 0.79 -0.1 5,512,899 + Pf6N2E2_4771 0.84 -0.1 5,512,900 - Pf6N2E2_4771 0.84 +0.1 5,512,900 - Pf6N2E2_4771 0.84 +0.7 5,512,900 - Pf6N2E2_4771 0.84 +0.7 5,512,974 + Pf6N2E2_4771 0.88 +0.9 5,512,974 + Pf6N2E2_4771 0.88 -1.0 5,512,975 - Pf6N2E2_4771 0.88 -0.1 5,512,975 - Pf6N2E2_4771 0.88 -0.2 5,513,578 + Pf6N2E2_4772 0.36 +3.1 5,513,578 + Pf6N2E2_4772 0.36 +3.5 5,513,578 + Pf6N2E2_4772 0.36 +3.7 5,513,578 + Pf6N2E2_4772 0.36 +3.5 5,513,578 + Pf6N2E2_4772 0.36 +3.0 5,513,578 + Pf6N2E2_4772 0.36 +3.8 5,513,667 + Pf6N2E2_4772 0.44 +3.5 5,513,722 + Pf6N2E2_4772 0.48 +3.6 5,513,722 + Pf6N2E2_4772 0.48 +2.6 5,514,028 + Pf6N2E2_4772 0.74 +3.2 5,514,028 + Pf6N2E2_4772 0.74 +2.9 5,514,028 + Pf6N2E2_4772 0.74 +3.4 5,514,029 - Pf6N2E2_4772 0.75 +3.1 5,514,029 - Pf6N2E2_4772 0.75 +2.5 5,514,029 - Pf6N2E2_4772 0.75 +3.7 5,514,029 - Pf6N2E2_4772 0.75 +2.7 5,514,029 - Pf6N2E2_4772 0.75 +2.7 5,514,208 + Pf6N2E2_4772 0.90 +3.5 5,514,232 + +3.3 5,514,233 - +2.4 5,514,486 - Pf6N2E2_4773 0.68 +1.4 5,514,573 + +3.3 5,514,573 + +4.1 5,514,573 + +2.9 5,514,573 + +3.7 5,514,573 + +3.6 5,514,574 - +0.3 5,514,574 - -0.0 5,514,574 - +1.1 5,514,574 - +1.3 5,514,574 - +0.8 5,514,578 + +3.9 5,514,578 + +3.7 5,514,579 - +1.9 5,514,619 + +3.8 5,514,641 - +2.7 5,514,733 + Pf6N2E2_4774 0.22 +2.1 5,514,733 + Pf6N2E2_4774 0.22 +2.9 5,514,734 - Pf6N2E2_4774 0.22 +2.5 5,514,802 + Pf6N2E2_4774 0.31 +2.5 5,514,802 + Pf6N2E2_4774 0.31 +4.1 5,514,803 - Pf6N2E2_4774 0.31 +1.2 5,514,803 - Pf6N2E2_4774 0.31 +2.8 5,514,944 - Pf6N2E2_4774 0.50 +2.1 5,515,158 - Pf6N2E2_4774 0.78 +2.1 5,515,168 + Pf6N2E2_4774 0.79 +3.3 5,515,168 + Pf6N2E2_4774 0.79 +2.2 5,515,225 + Pf6N2E2_4774 0.87 +3.9 5,515,225 + Pf6N2E2_4774 0.87 +3.3 5,515,225 + Pf6N2E2_4774 0.87 +4.3 5,515,225 + Pf6N2E2_4774 0.87 +4.0 5,515,225 + Pf6N2E2_4774 0.87 +3.5 5,515,225 + Pf6N2E2_4774 0.87 +2.9 5,515,225 + Pf6N2E2_4774 0.87 +3.2 5,515,225 + Pf6N2E2_4774 0.87 +4.0 5,515,225 + Pf6N2E2_4774 0.87 +2.7 5,515,226 - Pf6N2E2_4774 0.87 +2.5 5,515,226 - Pf6N2E2_4774 0.87 +2.9 5,515,226 - Pf6N2E2_4774 0.87 +2.0 5,515,226 - Pf6N2E2_4774 0.87 +2.0 5,515,226 - Pf6N2E2_4774 0.87 +1.9 5,515,226 - Pf6N2E2_4774 0.87 +2.1 5,515,226 - Pf6N2E2_4774 0.87 +1.6 5,515,226 - Pf6N2E2_4774 0.87 +1.6 5,515,226 - Pf6N2E2_4774 0.87 +1.4 5,515,241 - Pf6N2E2_4774 0.89 +3.3 5,515,262 - +2.1 5,515,262 - +2.9 5,515,262 - +2.7 5,515,262 - +2.4 5,515,262 - +2.0
Or see this region's nucleotide sequence