Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_4584

Experiment: D-Galactose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_4583 and Pf6N2E2_4584 overlap by 4 nucleotidesPf6N2E2_4584 and Pf6N2E2_4585 overlap by 4 nucleotides Pf6N2E2_4583 - Signal recognition particle receptor protein FtsY (=alpha subunit) (TC 3.A.5.1.1), at 5,313,296 to 5,314,729 _4583 Pf6N2E2_4584 - Cell division transporter, ATP-binding protein FtsE (TC 3.A.5.1.1), at 5,314,726 to 5,315,397 _4584 Pf6N2E2_4585 - Cell division protein FtsX, at 5,315,394 to 5,316,416 _4585 Position (kb) 5314 5315 5316Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 5314.851 kb on + strand, within Pf6N2E2_4584at 5314.851 kb on + strand, within Pf6N2E2_4584at 5314.951 kb on + strand, within Pf6N2E2_4584at 5314.952 kb on - strand, within Pf6N2E2_4584at 5315.261 kb on + strand, within Pf6N2E2_4584at 5315.331 kb on + strandat 5315.393 kb on + strandat 5315.393 kb on + strandat 5315.393 kb on + strandat 5315.402 kb on + strandat 5315.403 kb on - strandat 5315.591 kb on + strand, within Pf6N2E2_4585at 5315.591 kb on + strand, within Pf6N2E2_4585at 5315.703 kb on + strand, within Pf6N2E2_4585at 5315.787 kb on + strand, within Pf6N2E2_4585at 5315.787 kb on + strand, within Pf6N2E2_4585at 5315.787 kb on + strand, within Pf6N2E2_4585at 5315.787 kb on + strand, within Pf6N2E2_4585at 5315.788 kb on - strand, within Pf6N2E2_4585at 5315.788 kb on - strand, within Pf6N2E2_4585at 5315.929 kb on + strand, within Pf6N2E2_4585at 5315.929 kb on + strand, within Pf6N2E2_4585at 5315.930 kb on - strand, within Pf6N2E2_4585at 5315.959 kb on + strand, within Pf6N2E2_4585at 5315.959 kb on + strand, within Pf6N2E2_4585at 5316.076 kb on + strand, within Pf6N2E2_4585at 5316.076 kb on + strand, within Pf6N2E2_4585at 5316.083 kb on + strand, within Pf6N2E2_4585at 5316.083 kb on + strand, within Pf6N2E2_4585at 5316.083 kb on + strand, within Pf6N2E2_4585at 5316.084 kb on - strand, within Pf6N2E2_4585at 5316.121 kb on + strand, within Pf6N2E2_4585at 5316.122 kb on - strand, within Pf6N2E2_4585at 5316.132 kb on - strand, within Pf6N2E2_4585at 5316.132 kb on - strand, within Pf6N2E2_4585at 5316.132 kb on - strand, within Pf6N2E2_4585at 5316.132 kb on - strand, within Pf6N2E2_4585at 5316.156 kb on + strand, within Pf6N2E2_4585at 5316.156 kb on + strand, within Pf6N2E2_4585at 5316.156 kb on + strand, within Pf6N2E2_4585at 5316.156 kb on + strand, within Pf6N2E2_4585at 5316.156 kb on + strand, within Pf6N2E2_4585at 5316.156 kb on + strand, within Pf6N2E2_4585at 5316.156 kb on + strand, within Pf6N2E2_4585at 5316.156 kb on + strand, within Pf6N2E2_4585at 5316.156 kb on + strand, within Pf6N2E2_4585at 5316.157 kb on - strand, within Pf6N2E2_4585at 5316.157 kb on - strand, within Pf6N2E2_4585at 5316.157 kb on - strand, within Pf6N2E2_4585at 5316.157 kb on - strand, within Pf6N2E2_4585at 5316.157 kb on - strand, within Pf6N2E2_4585at 5316.160 kb on + strand, within Pf6N2E2_4585at 5316.160 kb on + strand, within Pf6N2E2_4585at 5316.160 kb on + strand, within Pf6N2E2_4585at 5316.160 kb on + strand, within Pf6N2E2_4585at 5316.161 kb on - strand, within Pf6N2E2_4585at 5316.161 kb on - strand, within Pf6N2E2_4585at 5316.161 kb on - strand, within Pf6N2E2_4585at 5316.177 kb on + strand, within Pf6N2E2_4585at 5316.177 kb on + strand, within Pf6N2E2_4585at 5316.177 kb on + strand, within Pf6N2E2_4585at 5316.177 kb on + strand, within Pf6N2E2_4585at 5316.177 kb on + strand, within Pf6N2E2_4585at 5316.177 kb on + strand, within Pf6N2E2_4585at 5316.178 kb on - strand, within Pf6N2E2_4585at 5316.178 kb on - strand, within Pf6N2E2_4585at 5316.178 kb on - strand, within Pf6N2E2_4585at 5316.178 kb on - strand, within Pf6N2E2_4585at 5316.178 kb on - strand, within Pf6N2E2_4585at 5316.179 kb on + strand, within Pf6N2E2_4585at 5316.179 kb on + strand, within Pf6N2E2_4585at 5316.179 kb on + strand, within Pf6N2E2_4585at 5316.179 kb on + strand, within Pf6N2E2_4585at 5316.180 kb on - strand, within Pf6N2E2_4585at 5316.180 kb on - strand, within Pf6N2E2_4585at 5316.180 kb on - strand, within Pf6N2E2_4585at 5316.180 kb on - strand, within Pf6N2E2_4585at 5316.192 kb on + strand, within Pf6N2E2_4585at 5316.192 kb on + strand, within Pf6N2E2_4585at 5316.192 kb on + strand, within Pf6N2E2_4585at 5316.193 kb on - strand, within Pf6N2E2_4585at 5316.215 kb on - strand, within Pf6N2E2_4585at 5316.215 kb on - strand, within Pf6N2E2_4585at 5316.215 kb on - strand, within Pf6N2E2_4585at 5316.283 kb on - strand, within Pf6N2E2_4585at 5316.360 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Galactose (C)
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5,314,851 + Pf6N2E2_4584 0.19 -0.3
5,314,851 + Pf6N2E2_4584 0.19 -1.2
5,314,951 + Pf6N2E2_4584 0.33 -1.1
5,314,952 - Pf6N2E2_4584 0.34 -0.9
5,315,261 + Pf6N2E2_4584 0.80 -1.0
5,315,331 + -2.3
5,315,393 + +1.4
5,315,393 + -1.1
5,315,393 + -0.6
5,315,402 + +1.3
5,315,403 - -0.2
5,315,591 + Pf6N2E2_4585 0.19 -0.6
5,315,591 + Pf6N2E2_4585 0.19 -1.8
5,315,703 + Pf6N2E2_4585 0.30 -0.7
5,315,787 + Pf6N2E2_4585 0.38 -1.1
5,315,787 + Pf6N2E2_4585 0.38 +0.1
5,315,787 + Pf6N2E2_4585 0.38 -0.2
5,315,787 + Pf6N2E2_4585 0.38 -0.5
5,315,788 - Pf6N2E2_4585 0.39 -1.2
5,315,788 - Pf6N2E2_4585 0.39 +0.3
5,315,929 + Pf6N2E2_4585 0.52 -1.9
5,315,929 + Pf6N2E2_4585 0.52 -0.2
5,315,930 - Pf6N2E2_4585 0.52 -2.0
5,315,959 + Pf6N2E2_4585 0.55 +0.3
5,315,959 + Pf6N2E2_4585 0.55 +0.1
5,316,076 + Pf6N2E2_4585 0.67 -0.9
5,316,076 + Pf6N2E2_4585 0.67 -0.9
5,316,083 + Pf6N2E2_4585 0.67 +0.3
5,316,083 + Pf6N2E2_4585 0.67 -2.2
5,316,083 + Pf6N2E2_4585 0.67 -2.8
5,316,084 - Pf6N2E2_4585 0.67 -1.5
5,316,121 + Pf6N2E2_4585 0.71 -0.8
5,316,122 - Pf6N2E2_4585 0.71 +1.4
5,316,132 - Pf6N2E2_4585 0.72 -0.1
5,316,132 - Pf6N2E2_4585 0.72 -2.7
5,316,132 - Pf6N2E2_4585 0.72 -0.6
5,316,132 - Pf6N2E2_4585 0.72 -0.7
5,316,156 + Pf6N2E2_4585 0.74 -0.9
5,316,156 + Pf6N2E2_4585 0.74 -0.1
5,316,156 + Pf6N2E2_4585 0.74 -2.0
5,316,156 + Pf6N2E2_4585 0.74 -0.1
5,316,156 + Pf6N2E2_4585 0.74 -1.5
5,316,156 + Pf6N2E2_4585 0.74 -1.3
5,316,156 + Pf6N2E2_4585 0.74 +0.0
5,316,156 + Pf6N2E2_4585 0.74 -2.4
5,316,156 + Pf6N2E2_4585 0.74 +0.1
5,316,157 - Pf6N2E2_4585 0.75 -0.7
5,316,157 - Pf6N2E2_4585 0.75 -0.2
5,316,157 - Pf6N2E2_4585 0.75 +0.3
5,316,157 - Pf6N2E2_4585 0.75 +0.3
5,316,157 - Pf6N2E2_4585 0.75 -1.2
5,316,160 + Pf6N2E2_4585 0.75 -0.6
5,316,160 + Pf6N2E2_4585 0.75 +0.2
5,316,160 + Pf6N2E2_4585 0.75 -0.1
5,316,160 + Pf6N2E2_4585 0.75 -0.6
5,316,161 - Pf6N2E2_4585 0.75 +0.0
5,316,161 - Pf6N2E2_4585 0.75 -0.4
5,316,161 - Pf6N2E2_4585 0.75 -2.1
5,316,177 + Pf6N2E2_4585 0.77 -0.6
5,316,177 + Pf6N2E2_4585 0.77 -0.7
5,316,177 + Pf6N2E2_4585 0.77 +1.5
5,316,177 + Pf6N2E2_4585 0.77 -0.8
5,316,177 + Pf6N2E2_4585 0.77 -0.3
5,316,177 + Pf6N2E2_4585 0.77 -0.4
5,316,178 - Pf6N2E2_4585 0.77 +1.1
5,316,178 - Pf6N2E2_4585 0.77 -1.2
5,316,178 - Pf6N2E2_4585 0.77 +0.6
5,316,178 - Pf6N2E2_4585 0.77 -1.7
5,316,178 - Pf6N2E2_4585 0.77 -0.3
5,316,179 + Pf6N2E2_4585 0.77 -0.8
5,316,179 + Pf6N2E2_4585 0.77 -1.7
5,316,179 + Pf6N2E2_4585 0.77 -1.4
5,316,179 + Pf6N2E2_4585 0.77 -1.5
5,316,180 - Pf6N2E2_4585 0.77 -1.3
5,316,180 - Pf6N2E2_4585 0.77 -1.0
5,316,180 - Pf6N2E2_4585 0.77 -0.1
5,316,180 - Pf6N2E2_4585 0.77 -0.0
5,316,192 + Pf6N2E2_4585 0.78 -1.2
5,316,192 + Pf6N2E2_4585 0.78 -0.6
5,316,192 + Pf6N2E2_4585 0.78 +3.8
5,316,193 - Pf6N2E2_4585 0.78 -0.4
5,316,215 - Pf6N2E2_4585 0.80 -2.1
5,316,215 - Pf6N2E2_4585 0.80 -2.5
5,316,215 - Pf6N2E2_4585 0.80 -0.9
5,316,283 - Pf6N2E2_4585 0.87 -2.5
5,316,360 + -1.6

Or see this region's nucleotide sequence