Experiment: D-Galactose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_4310 and Pf6N2E2_4311 are separated by 104 nucleotides Pf6N2E2_4311 and Pf6N2E2_4312 overlap by 4 nucleotides Pf6N2E2_4312 and Pf6N2E2_4313 are separated by 209 nucleotides
Pf6N2E2_4310 - IcmF-related protein, at 5,025,752 to 5,029,195
_4310
Pf6N2E2_4311 - Protein serine/threonine phosphatase PrpC, regulation of stationary phase, at 5,029,300 to 5,029,917
_4311
Pf6N2E2_4312 - Serine/threonine protein kinase (EC 2.7.11.1), at 5,029,914 to 5,030,846
_4312
Pf6N2E2_4313 - hypothetical protein, at 5,031,056 to 5,031,415
_4313
Position (kb) 5029
5030
5031 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 5028.922 kb on + strand at 5028.922 kb on + strand at 5028.961 kb on - strand at 5029.055 kb on + strand at 5029.115 kb on + strand at 5029.115 kb on + strand at 5029.116 kb on - strand at 5029.116 kb on - strand at 5029.116 kb on - strand at 5029.116 kb on - strand at 5029.116 kb on - strand at 5029.135 kb on + strand at 5029.213 kb on + strand at 5029.214 kb on - strand at 5029.254 kb on + strand at 5029.255 kb on - strand at 5029.255 kb on - strand at 5029.562 kb on - strand, within Pf6N2E2_4311 at 5029.562 kb on - strand, within Pf6N2E2_4311 at 5029.562 kb on - strand, within Pf6N2E2_4311 at 5029.585 kb on + strand, within Pf6N2E2_4311 at 5029.585 kb on + strand, within Pf6N2E2_4311 at 5029.585 kb on + strand, within Pf6N2E2_4311 at 5029.585 kb on + strand, within Pf6N2E2_4311 at 5029.585 kb on + strand, within Pf6N2E2_4311 at 5029.586 kb on - strand, within Pf6N2E2_4311 at 5029.586 kb on - strand, within Pf6N2E2_4311 at 5029.586 kb on - strand, within Pf6N2E2_4311 at 5029.586 kb on - strand, within Pf6N2E2_4311 at 5029.586 kb on - strand, within Pf6N2E2_4311 at 5029.780 kb on + strand, within Pf6N2E2_4311 at 5029.780 kb on + strand, within Pf6N2E2_4311 at 5029.780 kb on + strand, within Pf6N2E2_4311 at 5029.780 kb on + strand, within Pf6N2E2_4311 at 5029.780 kb on + strand, within Pf6N2E2_4311 at 5029.781 kb on - strand, within Pf6N2E2_4311 at 5029.941 kb on + strand at 5029.941 kb on + strand at 5029.941 kb on + strand at 5029.941 kb on + strand at 5029.942 kb on - strand at 5030.011 kb on + strand, within Pf6N2E2_4312 at 5030.011 kb on + strand, within Pf6N2E2_4312 at 5030.118 kb on + strand, within Pf6N2E2_4312 at 5030.119 kb on - strand, within Pf6N2E2_4312 at 5030.223 kb on - strand, within Pf6N2E2_4312 at 5030.235 kb on + strand, within Pf6N2E2_4312 at 5030.235 kb on + strand, within Pf6N2E2_4312 at 5030.236 kb on - strand, within Pf6N2E2_4312 at 5030.391 kb on + strand, within Pf6N2E2_4312 at 5030.392 kb on - strand, within Pf6N2E2_4312 at 5030.410 kb on + strand, within Pf6N2E2_4312 at 5030.410 kb on + strand, within Pf6N2E2_4312 at 5030.410 kb on + strand, within Pf6N2E2_4312 at 5030.614 kb on - strand, within Pf6N2E2_4312 at 5030.614 kb on - strand, within Pf6N2E2_4312 at 5030.634 kb on + strand, within Pf6N2E2_4312 at 5030.634 kb on + strand, within Pf6N2E2_4312 at 5030.634 kb on + strand, within Pf6N2E2_4312 at 5030.635 kb on - strand, within Pf6N2E2_4312 at 5030.635 kb on - strand, within Pf6N2E2_4312 at 5030.635 kb on - strand, within Pf6N2E2_4312 at 5030.635 kb on - strand, within Pf6N2E2_4312 at 5030.671 kb on + strand, within Pf6N2E2_4312 at 5030.793 kb on - strand at 5030.883 kb on + strand at 5030.883 kb on + strand at 5030.884 kb on - strand at 5030.884 kb on - strand at 5030.884 kb on - strand at 5030.974 kb on + strand at 5030.974 kb on + strand at 5031.309 kb on + strand, within Pf6N2E2_4313 at 5031.309 kb on + strand, within Pf6N2E2_4313 at 5031.309 kb on + strand, within Pf6N2E2_4313 at 5031.309 kb on + strand, within Pf6N2E2_4313 at 5031.309 kb on + strand, within Pf6N2E2_4313 at 5031.309 kb on + strand, within Pf6N2E2_4313 at 5031.309 kb on + strand, within Pf6N2E2_4313 at 5031.309 kb on + strand, within Pf6N2E2_4313 at 5031.309 kb on + strand, within Pf6N2E2_4313 at 5031.309 kb on + strand, within Pf6N2E2_4313 at 5031.309 kb on + strand, within Pf6N2E2_4313 at 5031.310 kb on - strand, within Pf6N2E2_4313 at 5031.310 kb on - strand, within Pf6N2E2_4313 at 5031.310 kb on - strand, within Pf6N2E2_4313 at 5031.310 kb on - strand, within Pf6N2E2_4313 at 5031.310 kb on - strand, within Pf6N2E2_4313 at 5031.310 kb on - strand, within Pf6N2E2_4313 at 5031.310 kb on - strand, within Pf6N2E2_4313 at 5031.310 kb on - strand, within Pf6N2E2_4313 at 5031.312 kb on + strand, within Pf6N2E2_4313 at 5031.312 kb on + strand, within Pf6N2E2_4313 at 5031.403 kb on + strand at 5031.404 kb on - strand at 5031.479 kb on + strand at 5031.480 kb on - strand at 5031.480 kb on - strand at 5031.548 kb on + strand at 5031.548 kb on + strand at 5031.553 kb on + strand at 5031.553 kb on + strand at 5031.553 kb on + strand at 5031.553 kb on + strand at 5031.553 kb on + strand at 5031.553 kb on + strand at 5031.553 kb on + strand at 5031.553 kb on + strand at 5031.553 kb on + strand at 5031.554 kb on - strand at 5031.554 kb on - strand at 5031.554 kb on - strand at 5031.554 kb on - strand at 5031.554 kb on - strand at 5031.554 kb on - strand at 5031.554 kb on - strand at 5031.554 kb on - strand at 5031.554 kb on - strand at 5031.554 kb on - strand at 5031.585 kb on + strand at 5031.585 kb on + strand at 5031.585 kb on + strand at 5031.585 kb on + strand at 5031.585 kb on + strand at 5031.585 kb on + strand at 5031.585 kb on + strand at 5031.585 kb on + strand at 5031.586 kb on - strand at 5031.660 kb on + strand at 5031.702 kb on + strand at 5031.708 kb on + strand at 5031.708 kb on + strand at 5031.730 kb on + strand at 5031.730 kb on + strand at 5031.730 kb on + strand at 5031.730 kb on + strand at 5031.731 kb on - strand at 5031.731 kb on - strand at 5031.731 kb on - strand at 5031.775 kb on - strand at 5031.775 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Galactose (C) remove 5,028,922 + +0.1 5,028,922 + +0.4 5,028,961 - +0.8 5,029,055 + -0.5 5,029,115 + -0.6 5,029,115 + +2.2 5,029,116 - -0.3 5,029,116 - +0.2 5,029,116 - -0.5 5,029,116 - -1.0 5,029,116 - +0.4 5,029,135 + -0.4 5,029,213 + -1.1 5,029,214 - -0.0 5,029,254 + +0.4 5,029,255 - -0.0 5,029,255 - -0.1 5,029,562 - Pf6N2E2_4311 0.42 +0.6 5,029,562 - Pf6N2E2_4311 0.42 -0.9 5,029,562 - Pf6N2E2_4311 0.42 +1.8 5,029,585 + Pf6N2E2_4311 0.46 -2.1 5,029,585 + Pf6N2E2_4311 0.46 -1.1 5,029,585 + Pf6N2E2_4311 0.46 +0.4 5,029,585 + Pf6N2E2_4311 0.46 -0.1 5,029,585 + Pf6N2E2_4311 0.46 -2.4 5,029,586 - Pf6N2E2_4311 0.46 -1.2 5,029,586 - Pf6N2E2_4311 0.46 +0.0 5,029,586 - Pf6N2E2_4311 0.46 -0.7 5,029,586 - Pf6N2E2_4311 0.46 +0.6 5,029,586 - Pf6N2E2_4311 0.46 +0.7 5,029,780 + Pf6N2E2_4311 0.78 -0.2 5,029,780 + Pf6N2E2_4311 0.78 -0.8 5,029,780 + Pf6N2E2_4311 0.78 +0.4 5,029,780 + Pf6N2E2_4311 0.78 +1.2 5,029,780 + Pf6N2E2_4311 0.78 +0.1 5,029,781 - Pf6N2E2_4311 0.78 +0.3 5,029,941 + +0.6 5,029,941 + -0.3 5,029,941 + +0.5 5,029,941 + +0.1 5,029,942 - +0.2 5,030,011 + Pf6N2E2_4312 0.10 -0.3 5,030,011 + Pf6N2E2_4312 0.10 -0.9 5,030,118 + Pf6N2E2_4312 0.22 -1.6 5,030,119 - Pf6N2E2_4312 0.22 -0.9 5,030,223 - Pf6N2E2_4312 0.33 -0.2 5,030,235 + Pf6N2E2_4312 0.34 -0.2 5,030,235 + Pf6N2E2_4312 0.34 +0.7 5,030,236 - Pf6N2E2_4312 0.35 -0.6 5,030,391 + Pf6N2E2_4312 0.51 -0.3 5,030,392 - Pf6N2E2_4312 0.51 -1.0 5,030,410 + Pf6N2E2_4312 0.53 +0.1 5,030,410 + Pf6N2E2_4312 0.53 +0.3 5,030,410 + Pf6N2E2_4312 0.53 +1.2 5,030,614 - Pf6N2E2_4312 0.75 -0.1 5,030,614 - Pf6N2E2_4312 0.75 -1.1 5,030,634 + Pf6N2E2_4312 0.77 +1.0 5,030,634 + Pf6N2E2_4312 0.77 +2.0 5,030,634 + Pf6N2E2_4312 0.77 +0.2 5,030,635 - Pf6N2E2_4312 0.77 +0.1 5,030,635 - Pf6N2E2_4312 0.77 +0.2 5,030,635 - Pf6N2E2_4312 0.77 +0.5 5,030,635 - Pf6N2E2_4312 0.77 -1.7 5,030,671 + Pf6N2E2_4312 0.81 +0.2 5,030,793 - -0.1 5,030,883 + +0.4 5,030,883 + +0.0 5,030,884 - +0.5 5,030,884 - -0.0 5,030,884 - -0.2 5,030,974 + +0.5 5,030,974 + +0.5 5,031,309 + Pf6N2E2_4313 0.70 +0.3 5,031,309 + Pf6N2E2_4313 0.70 +0.1 5,031,309 + Pf6N2E2_4313 0.70 +0.8 5,031,309 + Pf6N2E2_4313 0.70 -0.2 5,031,309 + Pf6N2E2_4313 0.70 -0.3 5,031,309 + Pf6N2E2_4313 0.70 -1.0 5,031,309 + Pf6N2E2_4313 0.70 -0.1 5,031,309 + Pf6N2E2_4313 0.70 -0.9 5,031,309 + Pf6N2E2_4313 0.70 +0.3 5,031,309 + Pf6N2E2_4313 0.70 +0.2 5,031,309 + Pf6N2E2_4313 0.70 -1.9 5,031,310 - Pf6N2E2_4313 0.71 -0.3 5,031,310 - Pf6N2E2_4313 0.71 +0.5 5,031,310 - Pf6N2E2_4313 0.71 -0.3 5,031,310 - Pf6N2E2_4313 0.71 -0.7 5,031,310 - Pf6N2E2_4313 0.71 -0.4 5,031,310 - Pf6N2E2_4313 0.71 -0.4 5,031,310 - Pf6N2E2_4313 0.71 -1.1 5,031,310 - Pf6N2E2_4313 0.71 -0.1 5,031,312 + Pf6N2E2_4313 0.71 -0.2 5,031,312 + Pf6N2E2_4313 0.71 -0.8 5,031,403 + -0.2 5,031,404 - -1.1 5,031,479 + -0.3 5,031,480 - +0.4 5,031,480 - -1.5 5,031,548 + -1.4 5,031,548 + +0.6 5,031,553 + -0.8 5,031,553 + -0.2 5,031,553 + +0.2 5,031,553 + +0.5 5,031,553 + +1.3 5,031,553 + -0.1 5,031,553 + -1.4 5,031,553 + +0.8 5,031,553 + -0.5 5,031,554 - +1.1 5,031,554 - -0.4 5,031,554 - +1.0 5,031,554 - -2.4 5,031,554 - +0.3 5,031,554 - +0.2 5,031,554 - +0.4 5,031,554 - +0.2 5,031,554 - -1.0 5,031,554 - -0.6 5,031,585 + +0.6 5,031,585 + +1.6 5,031,585 + +0.8 5,031,585 + +1.7 5,031,585 + -0.3 5,031,585 + -0.7 5,031,585 + +1.1 5,031,585 + -0.1 5,031,586 - -0.0 5,031,660 + +0.2 5,031,702 + +0.3 5,031,708 + +0.2 5,031,708 + -0.9 5,031,730 + +0.6 5,031,730 + -1.3 5,031,730 + +0.4 5,031,730 + -0.3 5,031,731 - +1.2 5,031,731 - +1.7 5,031,731 - -0.0 5,031,775 - +0.3 5,031,775 - +3.6
Or see this region's nucleotide sequence