Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_4236

Experiment: D-Galactose (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPf6N2E2_4234 and Pf6N2E2_4235 are separated by 41 nucleotidesPf6N2E2_4235 and Pf6N2E2_4236 are separated by 45 nucleotidesPf6N2E2_4236 and Pf6N2E2_4237 are separated by 0 nucleotides Pf6N2E2_4234 - Transcriptional regulator, at 4,925,708 to 4,926,610 _4234 Pf6N2E2_4235 - Glutathione S-transferase, unnamed subgroup (EC 2.5.1.18), at 4,926,652 to 4,927,362 _4235 Pf6N2E2_4236 - Glycosyltransferase, at 4,927,408 to 4,928,538 _4236 Pf6N2E2_4237 - Glycosyltransferase (EC 2.4.1.-), at 4,928,539 to 4,929,669 _4237 Position (kb) 4927 4928 4929Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 4926.431 kb on + strand, within Pf6N2E2_4234at 4926.431 kb on + strand, within Pf6N2E2_4234at 4926.431 kb on + strand, within Pf6N2E2_4234at 4926.432 kb on - strand, within Pf6N2E2_4234at 4926.745 kb on - strand, within Pf6N2E2_4235at 4926.754 kb on + strand, within Pf6N2E2_4235at 4926.955 kb on + strand, within Pf6N2E2_4235at 4926.956 kb on - strand, within Pf6N2E2_4235at 4926.956 kb on - strand, within Pf6N2E2_4235at 4926.970 kb on + strand, within Pf6N2E2_4235at 4926.970 kb on + strand, within Pf6N2E2_4235at 4926.971 kb on - strand, within Pf6N2E2_4235at 4926.971 kb on - strand, within Pf6N2E2_4235at 4926.971 kb on - strand, within Pf6N2E2_4235at 4927.088 kb on + strand, within Pf6N2E2_4235at 4927.088 kb on + strand, within Pf6N2E2_4235at 4927.088 kb on + strand, within Pf6N2E2_4235at 4927.089 kb on - strand, within Pf6N2E2_4235at 4927.089 kb on - strand, within Pf6N2E2_4235at 4927.089 kb on - strand, within Pf6N2E2_4235at 4927.102 kb on + strand, within Pf6N2E2_4235at 4927.102 kb on + strand, within Pf6N2E2_4235at 4927.103 kb on - strand, within Pf6N2E2_4235at 4927.177 kb on + strand, within Pf6N2E2_4235at 4927.177 kb on + strand, within Pf6N2E2_4235at 4927.178 kb on - strand, within Pf6N2E2_4235at 4927.178 kb on - strand, within Pf6N2E2_4235at 4927.178 kb on - strand, within Pf6N2E2_4235at 4927.178 kb on - strand, within Pf6N2E2_4235at 4927.178 kb on - strand, within Pf6N2E2_4235at 4927.225 kb on + strand, within Pf6N2E2_4235at 4927.225 kb on + strand, within Pf6N2E2_4235at 4927.225 kb on + strand, within Pf6N2E2_4235at 4927.225 kb on + strand, within Pf6N2E2_4235at 4927.225 kb on + strand, within Pf6N2E2_4235at 4927.226 kb on - strand, within Pf6N2E2_4235at 4927.226 kb on - strand, within Pf6N2E2_4235at 4927.226 kb on - strand, within Pf6N2E2_4235at 4927.226 kb on - strand, within Pf6N2E2_4235at 4927.226 kb on - strand, within Pf6N2E2_4235at 4927.226 kb on - strand, within Pf6N2E2_4235at 4927.226 kb on - strand, within Pf6N2E2_4235at 4927.226 kb on - strand, within Pf6N2E2_4235at 4927.267 kb on + strand, within Pf6N2E2_4235at 4927.267 kb on + strand, within Pf6N2E2_4235at 4927.268 kb on - strand, within Pf6N2E2_4235at 4927.268 kb on - strand, within Pf6N2E2_4235at 4927.268 kb on - strand, within Pf6N2E2_4235at 4927.268 kb on - strand, within Pf6N2E2_4235at 4927.268 kb on - strand, within Pf6N2E2_4235at 4927.372 kb on + strandat 4927.372 kb on + strandat 4927.416 kb on - strandat 4927.416 kb on - strandat 4927.448 kb on + strandat 4927.448 kb on + strandat 4927.449 kb on - strandat 4927.449 kb on - strandat 4927.449 kb on - strandat 4927.600 kb on + strand, within Pf6N2E2_4236at 4927.600 kb on + strand, within Pf6N2E2_4236at 4927.600 kb on + strand, within Pf6N2E2_4236at 4927.601 kb on - strand, within Pf6N2E2_4236at 4927.631 kb on + strand, within Pf6N2E2_4236at 4927.631 kb on + strand, within Pf6N2E2_4236at 4927.631 kb on + strand, within Pf6N2E2_4236at 4927.631 kb on + strand, within Pf6N2E2_4236at 4927.631 kb on + strand, within Pf6N2E2_4236at 4927.631 kb on + strand, within Pf6N2E2_4236at 4927.631 kb on + strand, within Pf6N2E2_4236at 4927.632 kb on - strand, within Pf6N2E2_4236at 4927.632 kb on - strand, within Pf6N2E2_4236at 4927.745 kb on + strand, within Pf6N2E2_4236at 4927.746 kb on - strand, within Pf6N2E2_4236at 4927.746 kb on - strand, within Pf6N2E2_4236at 4927.746 kb on - strand, within Pf6N2E2_4236at 4927.925 kb on + strand, within Pf6N2E2_4236at 4927.925 kb on + strand, within Pf6N2E2_4236at 4927.925 kb on + strand, within Pf6N2E2_4236at 4927.925 kb on + strand, within Pf6N2E2_4236at 4927.925 kb on + strand, within Pf6N2E2_4236at 4927.925 kb on + strand, within Pf6N2E2_4236at 4927.926 kb on - strand, within Pf6N2E2_4236at 4927.926 kb on - strand, within Pf6N2E2_4236at 4927.928 kb on + strand, within Pf6N2E2_4236at 4928.034 kb on - strand, within Pf6N2E2_4236at 4928.082 kb on + strand, within Pf6N2E2_4236at 4928.090 kb on + strand, within Pf6N2E2_4236at 4928.090 kb on + strand, within Pf6N2E2_4236at 4928.090 kb on + strand, within Pf6N2E2_4236at 4928.090 kb on + strand, within Pf6N2E2_4236at 4928.090 kb on + strand, within Pf6N2E2_4236at 4928.090 kb on + strand, within Pf6N2E2_4236at 4928.090 kb on + strand, within Pf6N2E2_4236at 4928.091 kb on - strand, within Pf6N2E2_4236at 4928.091 kb on - strand, within Pf6N2E2_4236at 4928.091 kb on - strand, within Pf6N2E2_4236at 4928.091 kb on - strand, within Pf6N2E2_4236at 4928.091 kb on - strand, within Pf6N2E2_4236at 4928.091 kb on - strand, within Pf6N2E2_4236at 4928.091 kb on - strand, within Pf6N2E2_4236at 4928.091 kb on - strand, within Pf6N2E2_4236at 4928.091 kb on - strand, within Pf6N2E2_4236at 4928.091 kb on - strand, within Pf6N2E2_4236at 4928.196 kb on - strand, within Pf6N2E2_4236at 4928.196 kb on - strand, within Pf6N2E2_4236at 4928.207 kb on + strand, within Pf6N2E2_4236at 4928.207 kb on + strand, within Pf6N2E2_4236at 4928.208 kb on - strand, within Pf6N2E2_4236at 4928.267 kb on + strand, within Pf6N2E2_4236at 4928.267 kb on + strand, within Pf6N2E2_4236at 4928.267 kb on + strand, within Pf6N2E2_4236at 4928.321 kb on + strand, within Pf6N2E2_4236at 4928.321 kb on + strand, within Pf6N2E2_4236at 4928.321 kb on + strand, within Pf6N2E2_4236at 4928.344 kb on + strand, within Pf6N2E2_4236at 4928.344 kb on + strand, within Pf6N2E2_4236at 4928.345 kb on - strand, within Pf6N2E2_4236at 4928.510 kb on + strandat 4928.511 kb on - strandat 4928.511 kb on - strandat 4928.511 kb on - strandat 4928.520 kb on - strandat 4928.711 kb on + strand, within Pf6N2E2_4237at 4928.711 kb on + strand, within Pf6N2E2_4237at 4928.711 kb on + strand, within Pf6N2E2_4237at 4928.712 kb on - strand, within Pf6N2E2_4237at 4928.816 kb on + strand, within Pf6N2E2_4237at 4928.816 kb on + strand, within Pf6N2E2_4237at 4928.817 kb on - strand, within Pf6N2E2_4237at 4928.817 kb on - strand, within Pf6N2E2_4237at 4928.819 kb on + strand, within Pf6N2E2_4237at 4928.819 kb on + strand, within Pf6N2E2_4237at 4928.854 kb on + strand, within Pf6N2E2_4237at 4928.854 kb on + strand, within Pf6N2E2_4237at 4928.855 kb on - strand, within Pf6N2E2_4237at 4928.855 kb on - strand, within Pf6N2E2_4237at 4928.882 kb on + strand, within Pf6N2E2_4237at 4928.882 kb on + strand, within Pf6N2E2_4237at 4928.965 kb on + strand, within Pf6N2E2_4237at 4928.965 kb on + strand, within Pf6N2E2_4237at 4928.966 kb on - strand, within Pf6N2E2_4237at 4928.966 kb on - strand, within Pf6N2E2_4237at 4928.992 kb on + strand, within Pf6N2E2_4237at 4928.992 kb on + strand, within Pf6N2E2_4237at 4928.992 kb on + strand, within Pf6N2E2_4237at 4928.992 kb on + strand, within Pf6N2E2_4237at 4928.993 kb on - strand, within Pf6N2E2_4237at 4929.067 kb on + strand, within Pf6N2E2_4237at 4929.067 kb on + strand, within Pf6N2E2_4237at 4929.067 kb on + strand, within Pf6N2E2_4237at 4929.067 kb on + strand, within Pf6N2E2_4237at 4929.067 kb on + strand, within Pf6N2E2_4237at 4929.068 kb on - strand, within Pf6N2E2_4237at 4929.068 kb on - strand, within Pf6N2E2_4237at 4929.068 kb on - strand, within Pf6N2E2_4237at 4929.068 kb on - strand, within Pf6N2E2_4237at 4929.068 kb on - strand, within Pf6N2E2_4237at 4929.068 kb on - strand, within Pf6N2E2_4237at 4929.068 kb on - strand, within Pf6N2E2_4237at 4929.068 kb on - strand, within Pf6N2E2_4237at 4929.068 kb on - strand, within Pf6N2E2_4237at 4929.074 kb on + strand, within Pf6N2E2_4237at 4929.075 kb on - strand, within Pf6N2E2_4237at 4929.075 kb on - strand, within Pf6N2E2_4237at 4929.075 kb on - strand, within Pf6N2E2_4237at 4929.106 kb on + strand, within Pf6N2E2_4237at 4929.106 kb on + strand, within Pf6N2E2_4237at 4929.106 kb on + strand, within Pf6N2E2_4237at 4929.106 kb on + strand, within Pf6N2E2_4237at 4929.107 kb on - strand, within Pf6N2E2_4237at 4929.107 kb on - strand, within Pf6N2E2_4237at 4929.395 kb on + strand, within Pf6N2E2_4237at 4929.395 kb on + strand, within Pf6N2E2_4237at 4929.395 kb on + strand, within Pf6N2E2_4237at 4929.395 kb on + strand, within Pf6N2E2_4237at 4929.396 kb on - strand, within Pf6N2E2_4237at 4929.462 kb on - strand, within Pf6N2E2_4237at 4929.526 kb on + strand, within Pf6N2E2_4237at 4929.527 kb on - strand, within Pf6N2E2_4237at 4929.527 kb on - strand, within Pf6N2E2_4237at 4929.527 kb on - strand, within Pf6N2E2_4237

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction D-Galactose (C)
remove
4,926,431 + Pf6N2E2_4234 0.80 +1.6
4,926,431 + Pf6N2E2_4234 0.80 -0.6
4,926,431 + Pf6N2E2_4234 0.80 -1.3
4,926,432 - Pf6N2E2_4234 0.80 -0.3
4,926,745 - Pf6N2E2_4235 0.13 +0.3
4,926,754 + Pf6N2E2_4235 0.14 -0.7
4,926,955 + Pf6N2E2_4235 0.43 -1.2
4,926,956 - Pf6N2E2_4235 0.43 +0.2
4,926,956 - Pf6N2E2_4235 0.43 +1.0
4,926,970 + Pf6N2E2_4235 0.45 +0.8
4,926,970 + Pf6N2E2_4235 0.45 +1.1
4,926,971 - Pf6N2E2_4235 0.45 -0.7
4,926,971 - Pf6N2E2_4235 0.45 +1.6
4,926,971 - Pf6N2E2_4235 0.45 +1.7
4,927,088 + Pf6N2E2_4235 0.61 -0.0
4,927,088 + Pf6N2E2_4235 0.61 +0.8
4,927,088 + Pf6N2E2_4235 0.61 +1.1
4,927,089 - Pf6N2E2_4235 0.61 +0.8
4,927,089 - Pf6N2E2_4235 0.61 -1.1
4,927,089 - Pf6N2E2_4235 0.61 -0.3
4,927,102 + Pf6N2E2_4235 0.63 -1.0
4,927,102 + Pf6N2E2_4235 0.63 +0.2
4,927,103 - Pf6N2E2_4235 0.63 -1.6
4,927,177 + Pf6N2E2_4235 0.74 -1.0
4,927,177 + Pf6N2E2_4235 0.74 -1.1
4,927,178 - Pf6N2E2_4235 0.74 +0.6
4,927,178 - Pf6N2E2_4235 0.74 -0.1
4,927,178 - Pf6N2E2_4235 0.74 -0.4
4,927,178 - Pf6N2E2_4235 0.74 -0.5
4,927,178 - Pf6N2E2_4235 0.74 +0.3
4,927,225 + Pf6N2E2_4235 0.81 +0.1
4,927,225 + Pf6N2E2_4235 0.81 +0.4
4,927,225 + Pf6N2E2_4235 0.81 +0.3
4,927,225 + Pf6N2E2_4235 0.81 -0.4
4,927,225 + Pf6N2E2_4235 0.81 -0.3
4,927,226 - Pf6N2E2_4235 0.81 -0.4
4,927,226 - Pf6N2E2_4235 0.81 +0.5
4,927,226 - Pf6N2E2_4235 0.81 +0.1
4,927,226 - Pf6N2E2_4235 0.81 -1.7
4,927,226 - Pf6N2E2_4235 0.81 +0.2
4,927,226 - Pf6N2E2_4235 0.81 -0.1
4,927,226 - Pf6N2E2_4235 0.81 +1.2
4,927,226 - Pf6N2E2_4235 0.81 -1.7
4,927,267 + Pf6N2E2_4235 0.86 -0.4
4,927,267 + Pf6N2E2_4235 0.86 -0.2
4,927,268 - Pf6N2E2_4235 0.87 -0.0
4,927,268 - Pf6N2E2_4235 0.87 -0.4
4,927,268 - Pf6N2E2_4235 0.87 +0.2
4,927,268 - Pf6N2E2_4235 0.87 +0.3
4,927,268 - Pf6N2E2_4235 0.87 -0.3
4,927,372 + -1.9
4,927,372 + +0.4
4,927,416 - +0.1
4,927,416 - -0.2
4,927,448 + +0.2
4,927,448 + +1.0
4,927,449 - -2.1
4,927,449 - +0.9
4,927,449 - +0.3
4,927,600 + Pf6N2E2_4236 0.17 +0.4
4,927,600 + Pf6N2E2_4236 0.17 +0.0
4,927,600 + Pf6N2E2_4236 0.17 +1.3
4,927,601 - Pf6N2E2_4236 0.17 +0.0
4,927,631 + Pf6N2E2_4236 0.20 +1.2
4,927,631 + Pf6N2E2_4236 0.20 +0.8
4,927,631 + Pf6N2E2_4236 0.20 -0.7
4,927,631 + Pf6N2E2_4236 0.20 +0.2
4,927,631 + Pf6N2E2_4236 0.20 -0.4
4,927,631 + Pf6N2E2_4236 0.20 +3.6
4,927,631 + Pf6N2E2_4236 0.20 +0.1
4,927,632 - Pf6N2E2_4236 0.20 +1.0
4,927,632 - Pf6N2E2_4236 0.20 +0.3
4,927,745 + Pf6N2E2_4236 0.30 -0.3
4,927,746 - Pf6N2E2_4236 0.30 +1.4
4,927,746 - Pf6N2E2_4236 0.30 +1.0
4,927,746 - Pf6N2E2_4236 0.30 -1.4
4,927,925 + Pf6N2E2_4236 0.46 +0.1
4,927,925 + Pf6N2E2_4236 0.46 -0.2
4,927,925 + Pf6N2E2_4236 0.46 -0.0
4,927,925 + Pf6N2E2_4236 0.46 +1.3
4,927,925 + Pf6N2E2_4236 0.46 +0.8
4,927,925 + Pf6N2E2_4236 0.46 -0.2
4,927,926 - Pf6N2E2_4236 0.46 +0.3
4,927,926 - Pf6N2E2_4236 0.46 +0.5
4,927,928 + Pf6N2E2_4236 0.46 -0.0
4,928,034 - Pf6N2E2_4236 0.55 +0.3
4,928,082 + Pf6N2E2_4236 0.60 +0.3
4,928,090 + Pf6N2E2_4236 0.60 +0.2
4,928,090 + Pf6N2E2_4236 0.60 +1.6
4,928,090 + Pf6N2E2_4236 0.60 -0.8
4,928,090 + Pf6N2E2_4236 0.60 -0.3
4,928,090 + Pf6N2E2_4236 0.60 +0.2
4,928,090 + Pf6N2E2_4236 0.60 -0.7
4,928,090 + Pf6N2E2_4236 0.60 +0.2
4,928,091 - Pf6N2E2_4236 0.60 +0.3
4,928,091 - Pf6N2E2_4236 0.60 -0.6
4,928,091 - Pf6N2E2_4236 0.60 -0.2
4,928,091 - Pf6N2E2_4236 0.60 -1.4
4,928,091 - Pf6N2E2_4236 0.60 +1.1
4,928,091 - Pf6N2E2_4236 0.60 -0.3
4,928,091 - Pf6N2E2_4236 0.60 +0.6
4,928,091 - Pf6N2E2_4236 0.60 -0.7
4,928,091 - Pf6N2E2_4236 0.60 +0.1
4,928,091 - Pf6N2E2_4236 0.60 +0.7
4,928,196 - Pf6N2E2_4236 0.70 +0.6
4,928,196 - Pf6N2E2_4236 0.70 +0.4
4,928,207 + Pf6N2E2_4236 0.71 +0.2
4,928,207 + Pf6N2E2_4236 0.71 -0.3
4,928,208 - Pf6N2E2_4236 0.71 +0.9
4,928,267 + Pf6N2E2_4236 0.76 +1.1
4,928,267 + Pf6N2E2_4236 0.76 +0.8
4,928,267 + Pf6N2E2_4236 0.76 -0.3
4,928,321 + Pf6N2E2_4236 0.81 +0.4
4,928,321 + Pf6N2E2_4236 0.81 +0.1
4,928,321 + Pf6N2E2_4236 0.81 -0.2
4,928,344 + Pf6N2E2_4236 0.83 +0.3
4,928,344 + Pf6N2E2_4236 0.83 -0.0
4,928,345 - Pf6N2E2_4236 0.83 +0.5
4,928,510 + -0.6
4,928,511 - +1.1
4,928,511 - -0.4
4,928,511 - +0.1
4,928,520 - -0.2
4,928,711 + Pf6N2E2_4237 0.15 +0.4
4,928,711 + Pf6N2E2_4237 0.15 -0.0
4,928,711 + Pf6N2E2_4237 0.15 -0.1
4,928,712 - Pf6N2E2_4237 0.15 -0.0
4,928,816 + Pf6N2E2_4237 0.24 -0.1
4,928,816 + Pf6N2E2_4237 0.24 -1.3
4,928,817 - Pf6N2E2_4237 0.25 -1.3
4,928,817 - Pf6N2E2_4237 0.25 -0.8
4,928,819 + Pf6N2E2_4237 0.25 +0.4
4,928,819 + Pf6N2E2_4237 0.25 +1.3
4,928,854 + Pf6N2E2_4237 0.28 -0.4
4,928,854 + Pf6N2E2_4237 0.28 -3.2
4,928,855 - Pf6N2E2_4237 0.28 -2.3
4,928,855 - Pf6N2E2_4237 0.28 -2.4
4,928,882 + Pf6N2E2_4237 0.30 -1.1
4,928,882 + Pf6N2E2_4237 0.30 +0.7
4,928,965 + Pf6N2E2_4237 0.38 +0.0
4,928,965 + Pf6N2E2_4237 0.38 +0.7
4,928,966 - Pf6N2E2_4237 0.38 -1.6
4,928,966 - Pf6N2E2_4237 0.38 -1.4
4,928,992 + Pf6N2E2_4237 0.40 +0.4
4,928,992 + Pf6N2E2_4237 0.40 +0.5
4,928,992 + Pf6N2E2_4237 0.40 -0.6
4,928,992 + Pf6N2E2_4237 0.40 +0.1
4,928,993 - Pf6N2E2_4237 0.40 -0.6
4,929,067 + Pf6N2E2_4237 0.47 -1.3
4,929,067 + Pf6N2E2_4237 0.47 +0.1
4,929,067 + Pf6N2E2_4237 0.47 -0.1
4,929,067 + Pf6N2E2_4237 0.47 +0.3
4,929,067 + Pf6N2E2_4237 0.47 +0.4
4,929,068 - Pf6N2E2_4237 0.47 -0.8
4,929,068 - Pf6N2E2_4237 0.47 -1.0
4,929,068 - Pf6N2E2_4237 0.47 -0.5
4,929,068 - Pf6N2E2_4237 0.47 -2.1
4,929,068 - Pf6N2E2_4237 0.47 -1.0
4,929,068 - Pf6N2E2_4237 0.47 -0.8
4,929,068 - Pf6N2E2_4237 0.47 -1.0
4,929,068 - Pf6N2E2_4237 0.47 -1.4
4,929,068 - Pf6N2E2_4237 0.47 -0.4
4,929,074 + Pf6N2E2_4237 0.47 -0.5
4,929,075 - Pf6N2E2_4237 0.47 -1.0
4,929,075 - Pf6N2E2_4237 0.47 -1.9
4,929,075 - Pf6N2E2_4237 0.47 -0.2
4,929,106 + Pf6N2E2_4237 0.50 +0.7
4,929,106 + Pf6N2E2_4237 0.50 +0.0
4,929,106 + Pf6N2E2_4237 0.50 +0.1
4,929,106 + Pf6N2E2_4237 0.50 +0.5
4,929,107 - Pf6N2E2_4237 0.50 -1.9
4,929,107 - Pf6N2E2_4237 0.50 -0.6
4,929,395 + Pf6N2E2_4237 0.76 -0.8
4,929,395 + Pf6N2E2_4237 0.76 -0.3
4,929,395 + Pf6N2E2_4237 0.76 -0.5
4,929,395 + Pf6N2E2_4237 0.76 +0.2
4,929,396 - Pf6N2E2_4237 0.76 +0.3
4,929,462 - Pf6N2E2_4237 0.82 -0.4
4,929,526 + Pf6N2E2_4237 0.87 +0.3
4,929,527 - Pf6N2E2_4237 0.87 -1.0
4,929,527 - Pf6N2E2_4237 0.87 -0.8
4,929,527 - Pf6N2E2_4237 0.87 +0.8

Or see this region's nucleotide sequence