Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_4097

Experiment: D-Galactose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_4096 and Pf6N2E2_4097 are separated by 162 nucleotidesPf6N2E2_4097 and Pf6N2E2_4098 are separated by 408 nucleotides Pf6N2E2_4096 - Sulfate transporter family protein in cluster with carbonic anhydrase, at 4,775,717 to 4,777,243 _4096 Pf6N2E2_4097 - FIG00953365: hypothetical protein, at 4,777,406 to 4,778,056 _4097 Pf6N2E2_4098 - Cytochrome c oxidase polypeptide II (EC 1.9.3.1), at 4,778,465 to 4,779,556 _4098 Position (kb) 4777 4778 4779Strain fitness (log2 ratio) -2 -1 0 1 2 3at 4776.511 kb on + strand, within Pf6N2E2_4096at 4776.511 kb on + strand, within Pf6N2E2_4096at 4776.511 kb on + strand, within Pf6N2E2_4096at 4776.512 kb on - strand, within Pf6N2E2_4096at 4776.512 kb on - strand, within Pf6N2E2_4096at 4776.512 kb on - strand, within Pf6N2E2_4096at 4776.562 kb on + strand, within Pf6N2E2_4096at 4776.563 kb on - strand, within Pf6N2E2_4096at 4776.563 kb on - strand, within Pf6N2E2_4096at 4776.649 kb on + strand, within Pf6N2E2_4096at 4776.761 kb on + strand, within Pf6N2E2_4096at 4776.761 kb on + strand, within Pf6N2E2_4096at 4776.761 kb on + strand, within Pf6N2E2_4096at 4776.762 kb on - strand, within Pf6N2E2_4096at 4776.762 kb on - strand, within Pf6N2E2_4096at 4777.047 kb on + strand, within Pf6N2E2_4096at 4777.047 kb on + strand, within Pf6N2E2_4096at 4777.048 kb on - strand, within Pf6N2E2_4096at 4777.048 kb on - strand, within Pf6N2E2_4096at 4777.091 kb on + strandat 4777.091 kb on + strandat 4777.091 kb on + strandat 4777.091 kb on + strandat 4777.092 kb on - strandat 4777.092 kb on - strandat 4777.092 kb on - strandat 4777.092 kb on - strandat 4777.092 kb on - strandat 4777.388 kb on - strandat 4777.388 kb on - strandat 4777.496 kb on - strand, within Pf6N2E2_4097at 4777.520 kb on + strand, within Pf6N2E2_4097at 4777.521 kb on - strand, within Pf6N2E2_4097at 4777.681 kb on + strand, within Pf6N2E2_4097at 4777.681 kb on + strand, within Pf6N2E2_4097at 4777.681 kb on + strand, within Pf6N2E2_4097at 4777.681 kb on + strand, within Pf6N2E2_4097at 4777.681 kb on + strand, within Pf6N2E2_4097at 4777.681 kb on + strand, within Pf6N2E2_4097at 4777.681 kb on + strand, within Pf6N2E2_4097at 4777.681 kb on + strand, within Pf6N2E2_4097at 4777.682 kb on - strand, within Pf6N2E2_4097at 4777.682 kb on - strand, within Pf6N2E2_4097at 4777.682 kb on - strand, within Pf6N2E2_4097at 4777.683 kb on + strand, within Pf6N2E2_4097at 4777.683 kb on + strand, within Pf6N2E2_4097at 4777.683 kb on + strand, within Pf6N2E2_4097at 4777.683 kb on + strand, within Pf6N2E2_4097at 4777.683 kb on + strand, within Pf6N2E2_4097at 4777.683 kb on + strand, within Pf6N2E2_4097at 4777.683 kb on + strand, within Pf6N2E2_4097at 4777.684 kb on - strand, within Pf6N2E2_4097at 4777.684 kb on - strand, within Pf6N2E2_4097at 4777.684 kb on - strand, within Pf6N2E2_4097at 4777.684 kb on - strand, within Pf6N2E2_4097at 4777.684 kb on - strand, within Pf6N2E2_4097at 4777.684 kb on - strand, within Pf6N2E2_4097at 4777.684 kb on - strand, within Pf6N2E2_4097at 4777.684 kb on - strand, within Pf6N2E2_4097at 4777.684 kb on - strand, within Pf6N2E2_4097at 4777.722 kb on + strand, within Pf6N2E2_4097at 4777.722 kb on + strand, within Pf6N2E2_4097at 4777.788 kb on + strand, within Pf6N2E2_4097at 4777.788 kb on + strand, within Pf6N2E2_4097at 4777.789 kb on - strand, within Pf6N2E2_4097at 4777.789 kb on - strand, within Pf6N2E2_4097at 4777.789 kb on - strand, within Pf6N2E2_4097at 4777.878 kb on - strand, within Pf6N2E2_4097at 4777.878 kb on - strand, within Pf6N2E2_4097at 4777.890 kb on + strand, within Pf6N2E2_4097at 4777.890 kb on + strand, within Pf6N2E2_4097at 4777.890 kb on + strand, within Pf6N2E2_4097at 4777.891 kb on - strand, within Pf6N2E2_4097at 4778.087 kb on - strandat 4778.087 kb on - strandat 4778.097 kb on + strandat 4778.097 kb on + strandat 4778.098 kb on - strandat 4778.098 kb on - strandat 4778.098 kb on - strandat 4778.098 kb on - strandat 4778.102 kb on + strandat 4778.102 kb on + strandat 4778.102 kb on + strandat 4778.102 kb on + strandat 4778.102 kb on + strandat 4778.102 kb on + strandat 4778.102 kb on + strandat 4778.102 kb on + strandat 4778.102 kb on + strandat 4778.102 kb on + strandat 4778.102 kb on + strandat 4778.102 kb on + strandat 4778.103 kb on - strandat 4778.103 kb on - strandat 4778.103 kb on - strandat 4778.103 kb on - strandat 4778.103 kb on - strandat 4778.103 kb on - strandat 4778.103 kb on - strandat 4778.103 kb on - strandat 4778.103 kb on - strandat 4778.123 kb on + strandat 4778.123 kb on + strandat 4778.123 kb on + strandat 4778.123 kb on + strandat 4778.124 kb on - strandat 4778.130 kb on + strandat 4778.157 kb on + strandat 4778.218 kb on + strandat 4778.248 kb on + strandat 4778.249 kb on - strandat 4778.249 kb on - strandat 4778.282 kb on + strandat 4778.282 kb on + strandat 4778.282 kb on + strandat 4778.282 kb on + strandat 4778.282 kb on + strandat 4778.283 kb on - strandat 4778.283 kb on - strandat 4778.283 kb on - strandat 4778.283 kb on - strandat 4778.283 kb on - strandat 4778.283 kb on - strandat 4778.285 kb on - strandat 4778.304 kb on + strandat 4778.304 kb on + strandat 4778.304 kb on + strandat 4778.304 kb on + strandat 4778.304 kb on + strandat 4778.304 kb on + strandat 4778.305 kb on - strandat 4778.305 kb on - strandat 4778.305 kb on - strandat 4778.352 kb on + strandat 4778.352 kb on + strandat 4778.353 kb on - strandat 4778.353 kb on - strandat 4778.353 kb on - strandat 4778.366 kb on - strandat 4778.389 kb on + strandat 4778.448 kb on + strandat 4778.448 kb on + strandat 4778.448 kb on + strandat 4778.448 kb on + strandat 4778.448 kb on + strandat 4778.448 kb on + strandat 4778.449 kb on - strandat 4778.449 kb on - strandat 4778.449 kb on - strandat 4778.449 kb on - strandat 4778.449 kb on - strandat 4778.449 kb on - strandat 4778.449 kb on - strandat 4778.509 kb on + strandat 4778.509 kb on + strandat 4778.509 kb on + strandat 4778.510 kb on - strandat 4778.510 kb on - strandat 4778.510 kb on - strandat 4778.510 kb on - strandat 4778.704 kb on - strand, within Pf6N2E2_4098at 4778.704 kb on - strand, within Pf6N2E2_4098at 4778.762 kb on + strand, within Pf6N2E2_4098at 4778.762 kb on + strand, within Pf6N2E2_4098at 4778.762 kb on + strand, within Pf6N2E2_4098at 4778.762 kb on + strand, within Pf6N2E2_4098at 4778.762 kb on + strand, within Pf6N2E2_4098at 4778.763 kb on - strand, within Pf6N2E2_4098at 4778.763 kb on - strand, within Pf6N2E2_4098at 4778.763 kb on - strand, within Pf6N2E2_4098at 4778.763 kb on - strand, within Pf6N2E2_4098at 4778.763 kb on - strand, within Pf6N2E2_4098at 4778.763 kb on - strand, within Pf6N2E2_4098at 4778.763 kb on - strand, within Pf6N2E2_4098at 4778.763 kb on - strand, within Pf6N2E2_4098at 4778.763 kb on - strand, within Pf6N2E2_4098at 4778.763 kb on - strand, within Pf6N2E2_4098at 4778.804 kb on + strand, within Pf6N2E2_4098at 4778.822 kb on + strand, within Pf6N2E2_4098at 4778.823 kb on - strand, within Pf6N2E2_4098at 4778.823 kb on - strand, within Pf6N2E2_4098at 4778.823 kb on - strand, within Pf6N2E2_4098at 4778.823 kb on - strand, within Pf6N2E2_4098at 4778.828 kb on + strand, within Pf6N2E2_4098at 4778.828 kb on + strand, within Pf6N2E2_4098at 4778.828 kb on + strand, within Pf6N2E2_4098at 4778.829 kb on - strand, within Pf6N2E2_4098at 4778.829 kb on - strand, within Pf6N2E2_4098at 4778.912 kb on + strand, within Pf6N2E2_4098at 4778.912 kb on + strand, within Pf6N2E2_4098at 4778.912 kb on + strand, within Pf6N2E2_4098at 4778.912 kb on + strand, within Pf6N2E2_4098at 4778.912 kb on + strand, within Pf6N2E2_4098at 4778.913 kb on - strand, within Pf6N2E2_4098at 4778.913 kb on - strand, within Pf6N2E2_4098at 4778.913 kb on - strand, within Pf6N2E2_4098

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Galactose (C)
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4,776,511 + Pf6N2E2_4096 0.52 +0.9
4,776,511 + Pf6N2E2_4096 0.52 +0.3
4,776,511 + Pf6N2E2_4096 0.52 +0.1
4,776,512 - Pf6N2E2_4096 0.52 +0.2
4,776,512 - Pf6N2E2_4096 0.52 +1.1
4,776,512 - Pf6N2E2_4096 0.52 -0.6
4,776,562 + Pf6N2E2_4096 0.55 -0.0
4,776,563 - Pf6N2E2_4096 0.55 +0.1
4,776,563 - Pf6N2E2_4096 0.55 -0.3
4,776,649 + Pf6N2E2_4096 0.61 +0.2
4,776,761 + Pf6N2E2_4096 0.68 -0.3
4,776,761 + Pf6N2E2_4096 0.68 -0.2
4,776,761 + Pf6N2E2_4096 0.68 +0.6
4,776,762 - Pf6N2E2_4096 0.68 +0.6
4,776,762 - Pf6N2E2_4096 0.68 +0.7
4,777,047 + Pf6N2E2_4096 0.87 -1.4
4,777,047 + Pf6N2E2_4096 0.87 +1.0
4,777,048 - Pf6N2E2_4096 0.87 +0.1
4,777,048 - Pf6N2E2_4096 0.87 -0.2
4,777,091 + -0.8
4,777,091 + +1.1
4,777,091 + +0.0
4,777,091 + -0.4
4,777,092 - +1.1
4,777,092 - +1.2
4,777,092 - -0.2
4,777,092 - -0.7
4,777,092 - -0.3
4,777,388 - +0.8
4,777,388 - +1.0
4,777,496 - Pf6N2E2_4097 0.14 +0.8
4,777,520 + Pf6N2E2_4097 0.18 +2.8
4,777,521 - Pf6N2E2_4097 0.18 +1.1
4,777,681 + Pf6N2E2_4097 0.42 +2.2
4,777,681 + Pf6N2E2_4097 0.42 +1.4
4,777,681 + Pf6N2E2_4097 0.42 +1.9
4,777,681 + Pf6N2E2_4097 0.42 +2.5
4,777,681 + Pf6N2E2_4097 0.42 +0.7
4,777,681 + Pf6N2E2_4097 0.42 +1.7
4,777,681 + Pf6N2E2_4097 0.42 +1.9
4,777,681 + Pf6N2E2_4097 0.42 +2.2
4,777,682 - Pf6N2E2_4097 0.42 +2.2
4,777,682 - Pf6N2E2_4097 0.42 +2.9
4,777,682 - Pf6N2E2_4097 0.42 +1.7
4,777,683 + Pf6N2E2_4097 0.43 +1.5
4,777,683 + Pf6N2E2_4097 0.43 +2.0
4,777,683 + Pf6N2E2_4097 0.43 +2.9
4,777,683 + Pf6N2E2_4097 0.43 +1.4
4,777,683 + Pf6N2E2_4097 0.43 +0.9
4,777,683 + Pf6N2E2_4097 0.43 +2.4
4,777,683 + Pf6N2E2_4097 0.43 +2.4
4,777,684 - Pf6N2E2_4097 0.43 +1.8
4,777,684 - Pf6N2E2_4097 0.43 +1.5
4,777,684 - Pf6N2E2_4097 0.43 +1.6
4,777,684 - Pf6N2E2_4097 0.43 +3.0
4,777,684 - Pf6N2E2_4097 0.43 +1.9
4,777,684 - Pf6N2E2_4097 0.43 +1.9
4,777,684 - Pf6N2E2_4097 0.43 +1.9
4,777,684 - Pf6N2E2_4097 0.43 +1.8
4,777,684 - Pf6N2E2_4097 0.43 +1.6
4,777,722 + Pf6N2E2_4097 0.49 +1.5
4,777,722 + Pf6N2E2_4097 0.49 +1.2
4,777,788 + Pf6N2E2_4097 0.59 +2.2
4,777,788 + Pf6N2E2_4097 0.59 +2.4
4,777,789 - Pf6N2E2_4097 0.59 +2.2
4,777,789 - Pf6N2E2_4097 0.59 +2.5
4,777,789 - Pf6N2E2_4097 0.59 +2.4
4,777,878 - Pf6N2E2_4097 0.73 +1.0
4,777,878 - Pf6N2E2_4097 0.73 +2.7
4,777,890 + Pf6N2E2_4097 0.74 +1.7
4,777,890 + Pf6N2E2_4097 0.74 +2.0
4,777,890 + Pf6N2E2_4097 0.74 +2.1
4,777,891 - Pf6N2E2_4097 0.75 +2.0
4,778,087 - -2.1
4,778,087 - -2.4
4,778,097 + +3.0
4,778,097 + +0.2
4,778,098 - +0.2
4,778,098 - +1.0
4,778,098 - -2.4
4,778,098 - -0.7
4,778,102 + +1.4
4,778,102 + +2.6
4,778,102 + +1.8
4,778,102 + +1.6
4,778,102 + +1.7
4,778,102 + +1.7
4,778,102 + +0.7
4,778,102 + +2.8
4,778,102 + +2.1
4,778,102 + +2.4
4,778,102 + +1.8
4,778,102 + +2.7
4,778,103 - -1.8
4,778,103 - -0.3
4,778,103 - -1.1
4,778,103 - +0.2
4,778,103 - -1.3
4,778,103 - +1.5
4,778,103 - -1.2
4,778,103 - +0.2
4,778,103 - -0.7
4,778,123 + +1.7
4,778,123 + +0.6
4,778,123 + +1.3
4,778,123 + +1.7
4,778,124 - -0.9
4,778,130 + +3.1
4,778,157 + +2.1
4,778,218 + +0.7
4,778,248 + +0.8
4,778,249 - +0.7
4,778,249 - +0.6
4,778,282 + +0.7
4,778,282 + +1.1
4,778,282 + +2.8
4,778,282 + +0.7
4,778,282 + +1.3
4,778,283 - -0.3
4,778,283 - -0.8
4,778,283 - -1.6
4,778,283 - -0.1
4,778,283 - -1.4
4,778,283 - -0.2
4,778,285 - -0.6
4,778,304 + +0.7
4,778,304 + +1.6
4,778,304 + +1.7
4,778,304 + -0.1
4,778,304 + +1.6
4,778,304 + +1.9
4,778,305 - -1.5
4,778,305 - -1.5
4,778,305 - -0.6
4,778,352 + +0.9
4,778,352 + +0.8
4,778,353 - -0.3
4,778,353 - +0.1
4,778,353 - -1.6
4,778,366 - -0.8
4,778,389 + -0.3
4,778,448 + +0.9
4,778,448 + +1.3
4,778,448 + +0.3
4,778,448 + +0.6
4,778,448 + +0.6
4,778,448 + +1.1
4,778,449 - -1.1
4,778,449 - +0.4
4,778,449 - -1.5
4,778,449 - +0.1
4,778,449 - -0.7
4,778,449 - -1.0
4,778,449 - -0.3
4,778,509 + -0.4
4,778,509 + +1.0
4,778,509 + +0.7
4,778,510 - -0.3
4,778,510 - -1.9
4,778,510 - -0.3
4,778,510 - -0.3
4,778,704 - Pf6N2E2_4098 0.22 -1.4
4,778,704 - Pf6N2E2_4098 0.22 -0.7
4,778,762 + Pf6N2E2_4098 0.27 +0.6
4,778,762 + Pf6N2E2_4098 0.27 -0.3
4,778,762 + Pf6N2E2_4098 0.27 +1.0
4,778,762 + Pf6N2E2_4098 0.27 +0.5
4,778,762 + Pf6N2E2_4098 0.27 +0.3
4,778,763 - Pf6N2E2_4098 0.27 -0.1
4,778,763 - Pf6N2E2_4098 0.27 -1.9
4,778,763 - Pf6N2E2_4098 0.27 -0.9
4,778,763 - Pf6N2E2_4098 0.27 -0.3
4,778,763 - Pf6N2E2_4098 0.27 -1.1
4,778,763 - Pf6N2E2_4098 0.27 +0.2
4,778,763 - Pf6N2E2_4098 0.27 -2.1
4,778,763 - Pf6N2E2_4098 0.27 -0.8
4,778,763 - Pf6N2E2_4098 0.27 -0.8
4,778,763 - Pf6N2E2_4098 0.27 -0.4
4,778,804 + Pf6N2E2_4098 0.31 -0.2
4,778,822 + Pf6N2E2_4098 0.33 -0.7
4,778,823 - Pf6N2E2_4098 0.33 +0.3
4,778,823 - Pf6N2E2_4098 0.33 -0.0
4,778,823 - Pf6N2E2_4098 0.33 -0.5
4,778,823 - Pf6N2E2_4098 0.33 -1.6
4,778,828 + Pf6N2E2_4098 0.33 -0.3
4,778,828 + Pf6N2E2_4098 0.33 +1.2
4,778,828 + Pf6N2E2_4098 0.33 -0.2
4,778,829 - Pf6N2E2_4098 0.33 -0.1
4,778,829 - Pf6N2E2_4098 0.33 +0.3
4,778,912 + Pf6N2E2_4098 0.41 -0.5
4,778,912 + Pf6N2E2_4098 0.41 -0.2
4,778,912 + Pf6N2E2_4098 0.41 +0.5
4,778,912 + Pf6N2E2_4098 0.41 +0.3
4,778,912 + Pf6N2E2_4098 0.41 -0.5
4,778,913 - Pf6N2E2_4098 0.41 -0.8
4,778,913 - Pf6N2E2_4098 0.41 -0.8
4,778,913 - Pf6N2E2_4098 0.41 +0.4

Or see this region's nucleotide sequence