Experiment: D-Galactose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_3509 and Pf6N2E2_3510 are separated by 236 nucleotides Pf6N2E2_3510 and Pf6N2E2_3511 are separated by 47 nucleotides Pf6N2E2_3511 and Pf6N2E2_3512 are separated by 17 nucleotides
Pf6N2E2_3509 - Methyl-accepting chemotaxis protein I (serine chemoreceptor protein), at 4,090,187 to 4,092,133
_3509
Pf6N2E2_3510 - 3-dehydroquinate dehydratase II (EC 4.2.1.10), at 4,092,370 to 4,092,822
_3510
Pf6N2E2_3511 - Biotin carboxyl carrier protein of acetyl-CoA carboxylase, at 4,092,870 to 4,093,334
_3511
Pf6N2E2_3512 - Biotin carboxylase of acetyl-CoA carboxylase (EC 6.3.4.14), at 4,093,352 to 4,094,707
_3512
Position (kb) 4092
4093 Strain fitness (log2 ratio) -1
0
1 at 4091.926 kb on - strand, within Pf6N2E2_3509 at 4092.016 kb on + strand at 4092.016 kb on + strand at 4092.016 kb on + strand at 4092.017 kb on - strand at 4092.017 kb on - strand at 4092.017 kb on - strand at 4092.285 kb on - strand at 4092.340 kb on + strand at 4092.354 kb on + strand at 4092.791 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Galactose (C) remove 4,091,926 - Pf6N2E2_3509 0.89 +0.4 4,092,016 + +0.8 4,092,016 + +1.6 4,092,016 + -0.9 4,092,017 - +0.3 4,092,017 - +1.6 4,092,017 - +0.9 4,092,285 - -1.0 4,092,340 + +0.7 4,092,354 + -0.7 4,092,791 + -0.0
Or see this region's nucleotide sequence