Experiment: D-Galactose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_2380 and Pf6N2E2_2381 are separated by 10 nucleotides Pf6N2E2_2381 and Pf6N2E2_2382 are separated by 197 nucleotides
Pf6N2E2_2380 - Nitrate reductase (EC 1.7.99.4) (from data) , at 2,817,700 to 2,820,417
_2380
Pf6N2E2_2381 - Uroporphyrinogen-III methyltransferase (EC 2.1.1.107), at 2,820,428 to 2,821,183
_2381
Pf6N2E2_2382 - Major porin and structural outer membrane porin OprF, at 2,821,381 to 2,822,415
_2382
Position (kb)
2820
2821
2822 Strain fitness (log2 ratio)
-2
-1
0
1 at 2819.730 kb on + strand, within Pf6N2E2_2380 at 2819.896 kb on + strand, within Pf6N2E2_2380 at 2819.896 kb on + strand, within Pf6N2E2_2380 at 2820.031 kb on + strand, within Pf6N2E2_2380 at 2820.072 kb on - strand, within Pf6N2E2_2380 at 2820.288 kb on + strand at 2820.288 kb on + strand at 2820.427 kb on + strand at 2820.428 kb on - strand at 2820.478 kb on - strand at 2820.478 kb on - strand at 2820.926 kb on + strand, within Pf6N2E2_2381 at 2820.926 kb on + strand, within Pf6N2E2_2381 at 2820.926 kb on + strand, within Pf6N2E2_2381 at 2820.926 kb on + strand, within Pf6N2E2_2381 at 2820.926 kb on + strand, within Pf6N2E2_2381 at 2820.926 kb on + strand, within Pf6N2E2_2381 at 2820.926 kb on + strand, within Pf6N2E2_2381 at 2820.927 kb on - strand, within Pf6N2E2_2381 at 2820.927 kb on - strand, within Pf6N2E2_2381 at 2820.927 kb on - strand, within Pf6N2E2_2381 at 2820.927 kb on - strand, within Pf6N2E2_2381 at 2820.927 kb on - strand, within Pf6N2E2_2381 at 2820.927 kb on - strand, within Pf6N2E2_2381 at 2820.927 kb on - strand, within Pf6N2E2_2381 at 2821.179 kb on + strand at 2821.179 kb on + strand at 2821.179 kb on + strand at 2821.180 kb on - strand at 2821.291 kb on + strand at 2821.291 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Galactose (C) remove 2,819,730 + Pf6N2E2_2380 0.75 -0.0 2,819,896 + Pf6N2E2_2380 0.81 -0.9 2,819,896 + Pf6N2E2_2380 0.81 +0.3 2,820,031 + Pf6N2E2_2380 0.86 -0.2 2,820,072 - Pf6N2E2_2380 0.87 -0.2 2,820,288 + +1.7 2,820,288 + +1.1 2,820,427 + +0.2 2,820,428 - +0.1 2,820,478 - +0.5 2,820,478 - -1.2 2,820,926 + Pf6N2E2_2381 0.66 -0.3 2,820,926 + Pf6N2E2_2381 0.66 +0.5 2,820,926 + Pf6N2E2_2381 0.66 -0.7 2,820,926 + Pf6N2E2_2381 0.66 -0.2 2,820,926 + Pf6N2E2_2381 0.66 +1.4 2,820,926 + Pf6N2E2_2381 0.66 +0.1 2,820,926 + Pf6N2E2_2381 0.66 +1.1 2,820,927 - Pf6N2E2_2381 0.66 -1.9 2,820,927 - Pf6N2E2_2381 0.66 +0.6 2,820,927 - Pf6N2E2_2381 0.66 +0.0 2,820,927 - Pf6N2E2_2381 0.66 +0.4 2,820,927 - Pf6N2E2_2381 0.66 +0.2 2,820,927 - Pf6N2E2_2381 0.66 +1.0 2,820,927 - Pf6N2E2_2381 0.66 +0.3 2,821,179 + -0.0 2,821,179 + +0.6 2,821,179 + +0.2 2,821,180 - +0.3 2,821,291 + -1.0 2,821,291 + -0.6
Or see this region's nucleotide sequence