Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_1916

Experiment: D-Galactose (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPf6N2E2_1916 and Pf6N2E2_1917 overlap by 11 nucleotidesPf6N2E2_1917 and Pf6N2E2_1918 are separated by 498 nucleotides Pf6N2E2_1916 - Transcriptional regulator, LysR family, at 2,270,692 to 2,270,970 _1916 Pf6N2E2_1917 - hypothetical protein, at 2,270,960 to 2,271,241 _1917 Pf6N2E2_1918 - Major facilitator family transporter, at 2,271,740 to 2,272,900 _1918 Position (kb) 2270 2271Strain fitness (log2 ratio) -2 -1 0 1 2 3 4 5at 2269.733 kb on + strandat 2269.733 kb on + strandat 2269.733 kb on + strandat 2269.734 kb on - strandat 2269.783 kb on - strandat 2269.797 kb on + strandat 2269.798 kb on - strandat 2269.839 kb on - strandat 2269.839 kb on - strandat 2269.996 kb on - strandat 2270.066 kb on - strandat 2270.109 kb on - strandat 2270.109 kb on - strandat 2270.109 kb on - strandat 2270.111 kb on - strandat 2270.208 kb on + strandat 2270.209 kb on - strandat 2270.209 kb on - strandat 2270.244 kb on - strandat 2270.461 kb on - strandat 2270.461 kb on - strandat 2270.461 kb on - strandat 2270.596 kb on - strandat 2270.596 kb on - strandat 2270.634 kb on + strandat 2270.657 kb on - strandat 2270.705 kb on - strandat 2270.705 kb on - strandat 2270.705 kb on - strandat 2270.705 kb on - strandat 2270.705 kb on - strandat 2270.705 kb on - strandat 2270.839 kb on - strand, within Pf6N2E2_1916at 2270.839 kb on - strand, within Pf6N2E2_1916at 2270.839 kb on - strand, within Pf6N2E2_1916at 2270.860 kb on + strand, within Pf6N2E2_1916at 2270.861 kb on - strand, within Pf6N2E2_1916at 2270.861 kb on - strand, within Pf6N2E2_1916at 2271.155 kb on - strand, within Pf6N2E2_1917at 2271.156 kb on + strand, within Pf6N2E2_1917at 2271.157 kb on - strand, within Pf6N2E2_1917at 2271.157 kb on - strand, within Pf6N2E2_1917at 2271.256 kb on + strandat 2271.257 kb on - strandat 2271.257 kb on - strandat 2271.272 kb on - strandat 2271.398 kb on + strandat 2271.425 kb on - strandat 2271.441 kb on - strandat 2271.571 kb on - strandat 2271.725 kb on - strandat 2271.725 kb on - strandat 2271.725 kb on - strandat 2271.727 kb on - strandat 2271.727 kb on - strandat 2271.737 kb on - strandat 2271.828 kb on - strandat 2271.828 kb on - strandat 2271.828 kb on - strandat 2271.828 kb on - strandat 2271.828 kb on - strandat 2271.828 kb on - strandat 2271.840 kb on + strandat 2271.841 kb on - strandat 2271.841 kb on - strandat 2271.846 kb on - strandat 2271.928 kb on + strand, within Pf6N2E2_1918at 2271.968 kb on - strand, within Pf6N2E2_1918

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction D-Galactose (C)
remove
2,269,733 + -1.1
2,269,733 + +1.3
2,269,733 + +0.9
2,269,734 - +2.9
2,269,783 - +3.3
2,269,797 + -0.1
2,269,798 - +1.9
2,269,839 - +3.3
2,269,839 - +2.7
2,269,996 - +2.8
2,270,066 - +3.7
2,270,109 - +2.2
2,270,109 - +2.2
2,270,109 - +2.5
2,270,111 - +2.6
2,270,208 + +0.8
2,270,209 - +1.9
2,270,209 - +2.9
2,270,244 - +2.9
2,270,461 - +1.9
2,270,461 - +2.7
2,270,461 - +5.0
2,270,596 - +1.7
2,270,596 - +1.5
2,270,634 + +2.0
2,270,657 - +2.6
2,270,705 - +1.5
2,270,705 - +1.8
2,270,705 - +2.9
2,270,705 - +2.4
2,270,705 - +2.6
2,270,705 - +1.9
2,270,839 - Pf6N2E2_1916 0.53 +2.0
2,270,839 - Pf6N2E2_1916 0.53 +2.7
2,270,839 - Pf6N2E2_1916 0.53 +1.4
2,270,860 + Pf6N2E2_1916 0.60 +1.0
2,270,861 - Pf6N2E2_1916 0.61 +1.7
2,270,861 - Pf6N2E2_1916 0.61 +3.5
2,271,155 - Pf6N2E2_1917 0.69 +2.1
2,271,156 + Pf6N2E2_1917 0.70 -2.2
2,271,157 - Pf6N2E2_1917 0.70 +1.0
2,271,157 - Pf6N2E2_1917 0.70 +3.2
2,271,256 + +1.3
2,271,257 - +1.7
2,271,257 - +2.4
2,271,272 - +1.8
2,271,398 + +1.4
2,271,425 - +1.7
2,271,441 - +0.4
2,271,571 - +2.4
2,271,725 - +2.4
2,271,725 - -0.2
2,271,725 - +2.2
2,271,727 - +1.0
2,271,727 - +1.5
2,271,737 - +1.4
2,271,828 - +0.0
2,271,828 - -0.3
2,271,828 - +0.5
2,271,828 - +1.1
2,271,828 - +0.2
2,271,828 - -0.3
2,271,840 + -1.1
2,271,841 - +0.6
2,271,841 - +1.9
2,271,846 - +1.1
2,271,928 + Pf6N2E2_1918 0.16 -0.3
2,271,968 - Pf6N2E2_1918 0.20 -0.3

Or see this region's nucleotide sequence