Experiment: D-Fructose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_721 and Pf1N1B4_722 are separated by 4 nucleotides Pf1N1B4_722 and Pf1N1B4_723 are separated by 148 nucleotides Pf1N1B4_723 and Pf1N1B4_724 overlap by 11 nucleotides Pf1N1B4_724 and Pf1N1B4_725 are separated by 218 nucleotides
Pf1N1B4_721 - InaA protein, at 824,741 to 825,454
_721
Pf1N1B4_722 - SAM-dependent methyltransferases, at 825,459 to 826,127
_722
Pf1N1B4_723 - two-component system sensor protein, at 826,276 to 827,556
_723
Pf1N1B4_724 - DNA-binding response regulator ColR, at 827,546 to 828,229
_724
Pf1N1B4_725 - PAP2 superfamily protein, at 828,448 to 829,191
_725
Position (kb) 826
827
828 Strain fitness (log2 ratio) -2
-1
0
1
2 at 825.297 kb on + strand, within Pf1N1B4_721 at 825.298 kb on - strand, within Pf1N1B4_721 at 825.372 kb on - strand, within Pf1N1B4_721 at 825.400 kb on - strand at 825.461 kb on - strand at 825.461 kb on - strand at 825.471 kb on + strand at 825.472 kb on - strand at 825.474 kb on + strand at 825.474 kb on + strand at 825.474 kb on + strand at 825.474 kb on + strand at 825.474 kb on + strand at 825.474 kb on + strand at 825.474 kb on + strand at 825.474 kb on + strand at 825.475 kb on - strand at 825.478 kb on + strand at 825.478 kb on + strand at 825.478 kb on + strand at 825.478 kb on + strand at 825.479 kb on - strand at 825.479 kb on - strand at 825.479 kb on - strand at 825.479 kb on - strand at 825.479 kb on - strand at 825.479 kb on - strand at 825.481 kb on - strand at 825.496 kb on + strand at 825.496 kb on + strand at 825.496 kb on + strand at 825.497 kb on - strand at 825.497 kb on - strand at 825.497 kb on - strand at 825.605 kb on + strand, within Pf1N1B4_722 at 825.822 kb on + strand, within Pf1N1B4_722 at 825.822 kb on + strand, within Pf1N1B4_722 at 826.066 kb on + strand at 826.067 kb on - strand at 826.090 kb on + strand at 826.164 kb on + strand at 826.164 kb on + strand at 826.164 kb on + strand at 826.164 kb on + strand at 826.164 kb on + strand at 826.164 kb on + strand at 826.164 kb on + strand at 826.164 kb on + strand at 826.164 kb on + strand at 826.164 kb on + strand at 826.164 kb on + strand at 826.164 kb on + strand at 826.164 kb on + strand at 826.164 kb on + strand at 826.164 kb on + strand at 826.164 kb on + strand at 826.165 kb on - strand at 826.165 kb on - strand at 826.165 kb on - strand at 826.165 kb on - strand at 826.165 kb on - strand at 826.169 kb on - strand at 826.216 kb on + strand at 826.216 kb on + strand at 826.216 kb on + strand at 826.217 kb on - strand at 826.472 kb on - strand, within Pf1N1B4_723 at 826.472 kb on - strand, within Pf1N1B4_723 at 826.472 kb on - strand, within Pf1N1B4_723 at 826.523 kb on + strand, within Pf1N1B4_723 at 826.523 kb on + strand, within Pf1N1B4_723 at 826.523 kb on + strand, within Pf1N1B4_723 at 826.524 kb on - strand, within Pf1N1B4_723 at 826.524 kb on - strand, within Pf1N1B4_723 at 826.524 kb on - strand, within Pf1N1B4_723 at 826.524 kb on - strand, within Pf1N1B4_723 at 826.524 kb on - strand, within Pf1N1B4_723 at 826.524 kb on - strand, within Pf1N1B4_723 at 826.524 kb on - strand, within Pf1N1B4_723 at 826.538 kb on + strand, within Pf1N1B4_723 at 826.538 kb on + strand, within Pf1N1B4_723 at 826.538 kb on + strand, within Pf1N1B4_723 at 826.538 kb on + strand, within Pf1N1B4_723 at 826.538 kb on + strand, within Pf1N1B4_723 at 826.538 kb on + strand, within Pf1N1B4_723 at 826.538 kb on + strand, within Pf1N1B4_723 at 826.539 kb on - strand, within Pf1N1B4_723 at 826.539 kb on - strand, within Pf1N1B4_723 at 826.539 kb on - strand, within Pf1N1B4_723 at 826.551 kb on + strand, within Pf1N1B4_723 at 826.551 kb on + strand, within Pf1N1B4_723 at 826.594 kb on - strand, within Pf1N1B4_723 at 826.594 kb on - strand, within Pf1N1B4_723 at 826.596 kb on - strand, within Pf1N1B4_723 at 826.675 kb on + strand, within Pf1N1B4_723 at 826.888 kb on + strand, within Pf1N1B4_723 at 826.888 kb on + strand, within Pf1N1B4_723 at 826.888 kb on + strand, within Pf1N1B4_723 at 826.889 kb on - strand, within Pf1N1B4_723 at 826.889 kb on - strand, within Pf1N1B4_723 at 826.889 kb on - strand, within Pf1N1B4_723 at 826.889 kb on - strand, within Pf1N1B4_723 at 827.000 kb on + strand, within Pf1N1B4_723 at 827.000 kb on + strand, within Pf1N1B4_723 at 827.000 kb on + strand, within Pf1N1B4_723 at 827.000 kb on + strand, within Pf1N1B4_723 at 827.000 kb on + strand, within Pf1N1B4_723 at 827.000 kb on + strand, within Pf1N1B4_723 at 827.001 kb on - strand, within Pf1N1B4_723 at 827.001 kb on - strand, within Pf1N1B4_723 at 827.001 kb on - strand, within Pf1N1B4_723 at 827.001 kb on - strand, within Pf1N1B4_723 at 827.001 kb on - strand, within Pf1N1B4_723 at 827.001 kb on - strand, within Pf1N1B4_723 at 827.001 kb on - strand, within Pf1N1B4_723 at 827.001 kb on - strand, within Pf1N1B4_723 at 827.029 kb on + strand, within Pf1N1B4_723 at 827.113 kb on + strand, within Pf1N1B4_723 at 827.114 kb on - strand, within Pf1N1B4_723 at 827.135 kb on - strand, within Pf1N1B4_723 at 827.135 kb on - strand, within Pf1N1B4_723 at 827.153 kb on - strand, within Pf1N1B4_723 at 827.210 kb on + strand, within Pf1N1B4_723 at 827.211 kb on - strand, within Pf1N1B4_723 at 827.246 kb on + strand, within Pf1N1B4_723 at 827.247 kb on - strand, within Pf1N1B4_723 at 827.247 kb on - strand, within Pf1N1B4_723 at 827.247 kb on - strand, within Pf1N1B4_723 at 827.308 kb on + strand, within Pf1N1B4_723 at 827.309 kb on - strand, within Pf1N1B4_723 at 827.339 kb on + strand, within Pf1N1B4_723 at 827.340 kb on - strand, within Pf1N1B4_723 at 827.340 kb on - strand, within Pf1N1B4_723 at 827.340 kb on - strand, within Pf1N1B4_723 at 827.340 kb on - strand, within Pf1N1B4_723 at 827.340 kb on - strand, within Pf1N1B4_723 at 827.340 kb on - strand, within Pf1N1B4_723 at 827.547 kb on + strand at 827.548 kb on - strand at 827.723 kb on + strand, within Pf1N1B4_724 at 827.724 kb on - strand, within Pf1N1B4_724 at 827.724 kb on - strand, within Pf1N1B4_724 at 827.724 kb on - strand, within Pf1N1B4_724 at 827.724 kb on - strand, within Pf1N1B4_724 at 827.724 kb on - strand, within Pf1N1B4_724 at 827.827 kb on - strand, within Pf1N1B4_724 at 827.934 kb on + strand, within Pf1N1B4_724 at 828.174 kb on + strand at 828.244 kb on + strand at 828.252 kb on - strand at 828.276 kb on - strand at 828.316 kb on + strand at 828.317 kb on - strand at 828.317 kb on - strand at 828.497 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Fructose (C) remove 825,297 + Pf1N1B4_721 0.78 -0.6 825,298 - Pf1N1B4_721 0.78 -0.6 825,372 - Pf1N1B4_721 0.88 -0.8 825,400 - +0.4 825,461 - +0.5 825,461 - +0.6 825,471 + -0.6 825,472 - +0.2 825,474 + -0.8 825,474 + +0.6 825,474 + -1.9 825,474 + +1.4 825,474 + -0.0 825,474 + -1.6 825,474 + -0.6 825,474 + -0.8 825,475 - +1.0 825,478 + +0.4 825,478 + -0.4 825,478 + -0.2 825,478 + -0.6 825,479 - +1.4 825,479 - +0.0 825,479 - -0.3 825,479 - +0.1 825,479 - -1.2 825,479 - +0.4 825,481 - +0.8 825,496 + -1.0 825,496 + +1.4 825,496 + +0.4 825,497 - +0.2 825,497 - -1.2 825,497 - +2.4 825,605 + Pf1N1B4_722 0.22 -1.0 825,822 + Pf1N1B4_722 0.54 -0.3 825,822 + Pf1N1B4_722 0.54 +0.5 826,066 + +0.7 826,067 - -2.2 826,090 + -0.3 826,164 + +0.2 826,164 + +0.8 826,164 + +0.1 826,164 + +0.4 826,164 + -2.0 826,164 + +0.4 826,164 + -0.6 826,164 + -0.3 826,164 + -0.6 826,164 + +0.4 826,164 + -0.2 826,164 + -1.9 826,164 + +0.4 826,164 + +0.1 826,164 + -0.9 826,164 + +0.1 826,165 - -0.9 826,165 - -0.5 826,165 - +0.5 826,165 - -1.1 826,165 - -0.5 826,169 - -0.0 826,216 + -0.0 826,216 + -0.5 826,216 + -0.2 826,217 - +1.4 826,472 - Pf1N1B4_723 0.15 +0.9 826,472 - Pf1N1B4_723 0.15 +0.4 826,472 - Pf1N1B4_723 0.15 +1.2 826,523 + Pf1N1B4_723 0.19 +0.6 826,523 + Pf1N1B4_723 0.19 +0.6 826,523 + Pf1N1B4_723 0.19 -0.2 826,524 - Pf1N1B4_723 0.19 +1.1 826,524 - Pf1N1B4_723 0.19 +0.4 826,524 - Pf1N1B4_723 0.19 +0.9 826,524 - Pf1N1B4_723 0.19 +1.1 826,524 - Pf1N1B4_723 0.19 -0.1 826,524 - Pf1N1B4_723 0.19 +1.3 826,524 - Pf1N1B4_723 0.19 +0.5 826,538 + Pf1N1B4_723 0.20 -0.9 826,538 + Pf1N1B4_723 0.20 -0.1 826,538 + Pf1N1B4_723 0.20 +0.5 826,538 + Pf1N1B4_723 0.20 +1.4 826,538 + Pf1N1B4_723 0.20 -0.6 826,538 + Pf1N1B4_723 0.20 -0.4 826,538 + Pf1N1B4_723 0.20 +1.5 826,539 - Pf1N1B4_723 0.21 +0.6 826,539 - Pf1N1B4_723 0.21 +1.5 826,539 - Pf1N1B4_723 0.21 -0.6 826,551 + Pf1N1B4_723 0.21 -0.9 826,551 + Pf1N1B4_723 0.21 +0.1 826,594 - Pf1N1B4_723 0.25 +0.2 826,594 - Pf1N1B4_723 0.25 +0.6 826,596 - Pf1N1B4_723 0.25 +0.8 826,675 + Pf1N1B4_723 0.31 +1.0 826,888 + Pf1N1B4_723 0.48 -0.7 826,888 + Pf1N1B4_723 0.48 +0.7 826,888 + Pf1N1B4_723 0.48 -0.3 826,889 - Pf1N1B4_723 0.48 +2.6 826,889 - Pf1N1B4_723 0.48 +0.8 826,889 - Pf1N1B4_723 0.48 +1.3 826,889 - Pf1N1B4_723 0.48 +0.5 827,000 + Pf1N1B4_723 0.57 +0.4 827,000 + Pf1N1B4_723 0.57 -0.2 827,000 + Pf1N1B4_723 0.57 +0.7 827,000 + Pf1N1B4_723 0.57 +1.9 827,000 + Pf1N1B4_723 0.57 +0.3 827,000 + Pf1N1B4_723 0.57 -0.1 827,001 - Pf1N1B4_723 0.57 +1.3 827,001 - Pf1N1B4_723 0.57 +1.1 827,001 - Pf1N1B4_723 0.57 +0.7 827,001 - Pf1N1B4_723 0.57 +1.1 827,001 - Pf1N1B4_723 0.57 +1.4 827,001 - Pf1N1B4_723 0.57 +1.6 827,001 - Pf1N1B4_723 0.57 +0.9 827,001 - Pf1N1B4_723 0.57 +0.8 827,029 + Pf1N1B4_723 0.59 +0.6 827,113 + Pf1N1B4_723 0.65 -1.5 827,114 - Pf1N1B4_723 0.65 +0.8 827,135 - Pf1N1B4_723 0.67 -0.4 827,135 - Pf1N1B4_723 0.67 +0.3 827,153 - Pf1N1B4_723 0.68 +0.4 827,210 + Pf1N1B4_723 0.73 -0.2 827,211 - Pf1N1B4_723 0.73 +0.4 827,246 + Pf1N1B4_723 0.76 -0.9 827,247 - Pf1N1B4_723 0.76 +0.9 827,247 - Pf1N1B4_723 0.76 +0.6 827,247 - Pf1N1B4_723 0.76 +1.6 827,308 + Pf1N1B4_723 0.81 -0.5 827,309 - Pf1N1B4_723 0.81 +1.4 827,339 + Pf1N1B4_723 0.83 -0.6 827,340 - Pf1N1B4_723 0.83 -0.2 827,340 - Pf1N1B4_723 0.83 +0.6 827,340 - Pf1N1B4_723 0.83 -0.4 827,340 - Pf1N1B4_723 0.83 +1.2 827,340 - Pf1N1B4_723 0.83 +0.5 827,340 - Pf1N1B4_723 0.83 +1.6 827,547 + -0.0 827,548 - +2.0 827,723 + Pf1N1B4_724 0.26 +1.4 827,724 - Pf1N1B4_724 0.26 +0.6 827,724 - Pf1N1B4_724 0.26 +1.8 827,724 - Pf1N1B4_724 0.26 -0.8 827,724 - Pf1N1B4_724 0.26 -1.6 827,724 - Pf1N1B4_724 0.26 +1.4 827,827 - Pf1N1B4_724 0.41 -0.6 827,934 + Pf1N1B4_724 0.57 -0.6 828,174 + +0.2 828,244 + +0.4 828,252 - -0.3 828,276 - +0.8 828,316 + -0.0 828,317 - -0.2 828,317 - -0.9 828,497 + -1.2
Or see this region's nucleotide sequence