Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_2664

Experiment: D-Fructose (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPf1N1B4_2662 and Pf1N1B4_2663 overlap by 4 nucleotidesPf1N1B4_2663 and Pf1N1B4_2664 are separated by 273 nucleotidesPf1N1B4_2664 and Pf1N1B4_2665 are separated by 594 nucleotides Pf1N1B4_2662 - Octaprenyl diphosphate synthase (EC 2.5.1.90) / Dimethylallyltransferase (EC 2.5.1.1) / (2E,6E)-farnesyl diphosphate synthase (EC 2.5.1.10) / Geranylgeranyl pyrophosphate synthetase (EC 2.5.1.29), at 2,999,218 to 3,000,105 _2662 Pf1N1B4_2663 - Exodeoxyribonuclease VII small subunit (EC 3.1.11.6), at 3,000,102 to 3,000,344 _2663 Pf1N1B4_2664 - Fic family protein, at 3,000,618 to 3,001,763 _2664 Pf1N1B4_2665 - Transcriptional regulator, at 3,002,358 to 3,003,104 _2665 Position (kb) 3000 3001 3002Strain fitness (log2 ratio) -2 -1 0 1 2at 3000.368 kb on - strandat 3000.409 kb on + strandat 3000.409 kb on + strandat 3000.409 kb on + strandat 3000.410 kb on - strandat 3000.410 kb on - strandat 3000.410 kb on - strandat 3000.410 kb on - strandat 3000.410 kb on - strandat 3000.410 kb on - strandat 3000.410 kb on - strandat 3000.420 kb on + strandat 3000.619 kb on + strandat 3000.620 kb on - strandat 3000.761 kb on - strand, within Pf1N1B4_2664at 3000.822 kb on + strand, within Pf1N1B4_2664at 3000.923 kb on + strand, within Pf1N1B4_2664at 3000.923 kb on + strand, within Pf1N1B4_2664at 3000.923 kb on + strand, within Pf1N1B4_2664at 3000.923 kb on + strand, within Pf1N1B4_2664at 3000.923 kb on + strand, within Pf1N1B4_2664at 3000.974 kb on + strandat 3000.974 kb on + strand, within Pf1N1B4_2664at 3000.975 kb on - strandat 3001.046 kb on - strand, within Pf1N1B4_2664at 3001.046 kb on - strandat 3001.083 kb on + strand, within Pf1N1B4_2664at 3001.388 kb on + strand, within Pf1N1B4_2664at 3001.388 kb on + strand, within Pf1N1B4_2664at 3001.389 kb on - strand, within Pf1N1B4_2664at 3001.389 kb on - strand, within Pf1N1B4_2664at 3001.389 kb on - strand, within Pf1N1B4_2664at 3001.389 kb on - strand, within Pf1N1B4_2664at 3001.389 kb on - strand, within Pf1N1B4_2664at 3001.389 kb on - strand, within Pf1N1B4_2664at 3001.926 kb on + strandat 3001.926 kb on + strandat 3001.927 kb on - strandat 3001.967 kb on + strandat 3001.967 kb on + strandat 3001.968 kb on - strandat 3001.968 kb on - strandat 3001.968 kb on - strandat 3002.045 kb on - strandat 3002.045 kb on - strandat 3002.045 kb on - strandat 3002.153 kb on - strandat 3002.213 kb on + strandat 3002.214 kb on - strandat 3002.214 kb on - strandat 3002.214 kb on - strandat 3002.253 kb on + strandat 3002.268 kb on + strandat 3002.268 kb on + strandat 3002.269 kb on - strandat 3002.269 kb on - strandat 3002.269 kb on - strandat 3002.269 kb on - strandat 3002.269 kb on - strandat 3002.269 kb on - strandat 3002.269 kb on - strandat 3002.361 kb on + strandat 3002.361 kb on + strandat 3002.361 kb on + strandat 3002.361 kb on + strandat 3002.361 kb on + strandat 3002.361 kb on + strandat 3002.361 kb on + strandat 3002.361 kb on + strandat 3002.361 kb on + strandat 3002.362 kb on - strandat 3002.362 kb on - strandat 3002.362 kb on - strandat 3002.362 kb on - strandat 3002.362 kb on - strandat 3002.362 kb on - strandat 3002.362 kb on - strandat 3002.388 kb on - strandat 3002.439 kb on - strand, within Pf1N1B4_2665at 3002.487 kb on - strandat 3002.487 kb on - strand, within Pf1N1B4_2665at 3002.488 kb on + strand, within Pf1N1B4_2665at 3002.488 kb on + strand, within Pf1N1B4_2665at 3002.488 kb on + strand, within Pf1N1B4_2665at 3002.489 kb on - strand, within Pf1N1B4_2665at 3002.489 kb on - strand, within Pf1N1B4_2665at 3002.489 kb on - strand, within Pf1N1B4_2665at 3002.489 kb on - strand, within Pf1N1B4_2665at 3002.530 kb on + strand, within Pf1N1B4_2665at 3002.530 kb on + strandat 3002.531 kb on - strand, within Pf1N1B4_2665at 3002.531 kb on - strand, within Pf1N1B4_2665at 3002.663 kb on + strand, within Pf1N1B4_2665at 3002.669 kb on + strand, within Pf1N1B4_2665at 3002.669 kb on + strand, within Pf1N1B4_2665at 3002.669 kb on + strand, within Pf1N1B4_2665at 3002.669 kb on + strand, within Pf1N1B4_2665at 3002.669 kb on + strand, within Pf1N1B4_2665

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction D-Fructose (C)
remove
3,000,368 - -1.4
3,000,409 + -0.4
3,000,409 + +1.6
3,000,409 + +0.1
3,000,410 - +1.6
3,000,410 - +0.1
3,000,410 - +1.4
3,000,410 - +0.1
3,000,410 - -0.7
3,000,410 - -1.4
3,000,410 - +0.5
3,000,420 + +0.3
3,000,619 + -0.4
3,000,620 - +2.2
3,000,761 - Pf1N1B4_2664 0.12 -0.4
3,000,822 + Pf1N1B4_2664 0.18 +0.4
3,000,923 + Pf1N1B4_2664 0.27 -1.2
3,000,923 + Pf1N1B4_2664 0.27 +0.1
3,000,923 + Pf1N1B4_2664 0.27 -0.7
3,000,923 + Pf1N1B4_2664 0.27 -1.2
3,000,923 + Pf1N1B4_2664 0.27 -1.5
3,000,974 + +1.6
3,000,974 + Pf1N1B4_2664 0.31 -0.4
3,000,975 - +0.1
3,001,046 - Pf1N1B4_2664 0.37 +0.2
3,001,046 - +2.6
3,001,083 + Pf1N1B4_2664 0.41 +0.2
3,001,388 + Pf1N1B4_2664 0.67 -1.9
3,001,388 + Pf1N1B4_2664 0.67 -0.7
3,001,389 - Pf1N1B4_2664 0.67 -0.9
3,001,389 - Pf1N1B4_2664 0.67 -0.2
3,001,389 - Pf1N1B4_2664 0.67 -1.2
3,001,389 - Pf1N1B4_2664 0.67 -1.2
3,001,389 - Pf1N1B4_2664 0.67 +1.0
3,001,389 - Pf1N1B4_2664 0.67 +1.6
3,001,926 + +0.2
3,001,926 + -0.3
3,001,927 - +0.2
3,001,967 + -0.1
3,001,967 + +0.5
3,001,968 - -0.9
3,001,968 - -0.4
3,001,968 - +0.1
3,002,045 - +0.1
3,002,045 - +0.2
3,002,045 - -1.3
3,002,153 - -0.3
3,002,213 + -1.2
3,002,214 - +0.1
3,002,214 - +0.1
3,002,214 - +1.3
3,002,253 + -1.3
3,002,268 + -1.2
3,002,268 + +0.5
3,002,269 - +0.9
3,002,269 - -0.3
3,002,269 - +1.0
3,002,269 - -0.0
3,002,269 - +0.2
3,002,269 - +0.6
3,002,269 - +1.2
3,002,361 + -0.6
3,002,361 + -1.4
3,002,361 + -0.9
3,002,361 + -0.1
3,002,361 + -0.0
3,002,361 + -0.4
3,002,361 + -0.4
3,002,361 + +0.4
3,002,361 + -0.5
3,002,362 - -0.2
3,002,362 - +2.1
3,002,362 - +1.2
3,002,362 - +0.5
3,002,362 - +0.6
3,002,362 - -0.4
3,002,362 - +0.7
3,002,388 - +0.1
3,002,439 - Pf1N1B4_2665 0.11 +1.1
3,002,487 - +1.6
3,002,487 - Pf1N1B4_2665 0.17 +0.1
3,002,488 + Pf1N1B4_2665 0.17 -1.1
3,002,488 + Pf1N1B4_2665 0.17 -2.3
3,002,488 + Pf1N1B4_2665 0.17 -0.6
3,002,489 - Pf1N1B4_2665 0.18 +0.1
3,002,489 - Pf1N1B4_2665 0.18 +0.2
3,002,489 - Pf1N1B4_2665 0.18 -0.7
3,002,489 - Pf1N1B4_2665 0.18 -0.4
3,002,530 + Pf1N1B4_2665 0.23 +1.1
3,002,530 + +0.1
3,002,531 - Pf1N1B4_2665 0.23 -0.4
3,002,531 - Pf1N1B4_2665 0.23 -0.1
3,002,663 + Pf1N1B4_2665 0.41 +0.1
3,002,669 + Pf1N1B4_2665 0.42 -0.9
3,002,669 + Pf1N1B4_2665 0.42 -0.7
3,002,669 + Pf1N1B4_2665 0.42 +0.6
3,002,669 + Pf1N1B4_2665 0.42 +1.2
3,002,669 + Pf1N1B4_2665 0.42 +0.2

Or see this region's nucleotide sequence