Experiment: D-Fructose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_2662 and Pf1N1B4_2663 overlap by 4 nucleotides Pf1N1B4_2663 and Pf1N1B4_2664 are separated by 273 nucleotides Pf1N1B4_2664 and Pf1N1B4_2665 are separated by 594 nucleotides
Pf1N1B4_2662 - Octaprenyl diphosphate synthase (EC 2.5.1.90) / Dimethylallyltransferase (EC 2.5.1.1) / (2E,6E)-farnesyl diphosphate synthase (EC 2.5.1.10) / Geranylgeranyl pyrophosphate synthetase (EC 2.5.1.29), at 2,999,218 to 3,000,105
_2662
Pf1N1B4_2663 - Exodeoxyribonuclease VII small subunit (EC 3.1.11.6), at 3,000,102 to 3,000,344
_2663
Pf1N1B4_2664 - Fic family protein, at 3,000,618 to 3,001,763
_2664
Pf1N1B4_2665 - Transcriptional regulator, at 3,002,358 to 3,003,104
_2665
Position (kb)
3000
3001
3002 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3000.368 kb on - strand at 3000.409 kb on + strand at 3000.409 kb on + strand at 3000.409 kb on + strand at 3000.410 kb on - strand at 3000.410 kb on - strand at 3000.410 kb on - strand at 3000.410 kb on - strand at 3000.410 kb on - strand at 3000.410 kb on - strand at 3000.410 kb on - strand at 3000.420 kb on + strand at 3000.619 kb on + strand at 3000.620 kb on - strand at 3000.761 kb on - strand, within Pf1N1B4_2664 at 3000.822 kb on + strand, within Pf1N1B4_2664 at 3000.923 kb on + strand, within Pf1N1B4_2664 at 3000.923 kb on + strand, within Pf1N1B4_2664 at 3000.923 kb on + strand, within Pf1N1B4_2664 at 3000.923 kb on + strand, within Pf1N1B4_2664 at 3000.923 kb on + strand, within Pf1N1B4_2664 at 3000.974 kb on + strand at 3000.974 kb on + strand, within Pf1N1B4_2664 at 3000.975 kb on - strand at 3001.046 kb on - strand, within Pf1N1B4_2664 at 3001.046 kb on - strand at 3001.083 kb on + strand, within Pf1N1B4_2664 at 3001.388 kb on + strand, within Pf1N1B4_2664 at 3001.388 kb on + strand, within Pf1N1B4_2664 at 3001.389 kb on - strand, within Pf1N1B4_2664 at 3001.389 kb on - strand, within Pf1N1B4_2664 at 3001.389 kb on - strand, within Pf1N1B4_2664 at 3001.389 kb on - strand, within Pf1N1B4_2664 at 3001.389 kb on - strand, within Pf1N1B4_2664 at 3001.389 kb on - strand, within Pf1N1B4_2664 at 3001.926 kb on + strand at 3001.926 kb on + strand at 3001.927 kb on - strand at 3001.967 kb on + strand at 3001.967 kb on + strand at 3001.968 kb on - strand at 3001.968 kb on - strand at 3001.968 kb on - strand at 3002.045 kb on - strand at 3002.045 kb on - strand at 3002.045 kb on - strand at 3002.153 kb on - strand at 3002.213 kb on + strand at 3002.214 kb on - strand at 3002.214 kb on - strand at 3002.214 kb on - strand at 3002.253 kb on + strand at 3002.268 kb on + strand at 3002.268 kb on + strand at 3002.269 kb on - strand at 3002.269 kb on - strand at 3002.269 kb on - strand at 3002.269 kb on - strand at 3002.269 kb on - strand at 3002.269 kb on - strand at 3002.269 kb on - strand at 3002.361 kb on + strand at 3002.361 kb on + strand at 3002.361 kb on + strand at 3002.361 kb on + strand at 3002.361 kb on + strand at 3002.361 kb on + strand at 3002.361 kb on + strand at 3002.361 kb on + strand at 3002.361 kb on + strand at 3002.362 kb on - strand at 3002.362 kb on - strand at 3002.362 kb on - strand at 3002.362 kb on - strand at 3002.362 kb on - strand at 3002.362 kb on - strand at 3002.362 kb on - strand at 3002.388 kb on - strand at 3002.439 kb on - strand, within Pf1N1B4_2665 at 3002.487 kb on - strand at 3002.487 kb on - strand, within Pf1N1B4_2665 at 3002.488 kb on + strand, within Pf1N1B4_2665 at 3002.488 kb on + strand, within Pf1N1B4_2665 at 3002.488 kb on + strand, within Pf1N1B4_2665 at 3002.489 kb on - strand, within Pf1N1B4_2665 at 3002.489 kb on - strand, within Pf1N1B4_2665 at 3002.489 kb on - strand, within Pf1N1B4_2665 at 3002.489 kb on - strand, within Pf1N1B4_2665 at 3002.530 kb on + strand, within Pf1N1B4_2665 at 3002.530 kb on + strand at 3002.531 kb on - strand, within Pf1N1B4_2665 at 3002.531 kb on - strand, within Pf1N1B4_2665 at 3002.663 kb on + strand, within Pf1N1B4_2665 at 3002.669 kb on + strand, within Pf1N1B4_2665 at 3002.669 kb on + strand, within Pf1N1B4_2665 at 3002.669 kb on + strand, within Pf1N1B4_2665 at 3002.669 kb on + strand, within Pf1N1B4_2665 at 3002.669 kb on + strand, within Pf1N1B4_2665
Per-strain Table
Position Strand Gene LocusTag Fraction D-Fructose (C) remove 3,000,368 - -1.4 3,000,409 + -0.4 3,000,409 + +1.6 3,000,409 + +0.1 3,000,410 - +1.6 3,000,410 - +0.1 3,000,410 - +1.4 3,000,410 - +0.1 3,000,410 - -0.7 3,000,410 - -1.4 3,000,410 - +0.5 3,000,420 + +0.3 3,000,619 + -0.4 3,000,620 - +2.2 3,000,761 - Pf1N1B4_2664 0.12 -0.4 3,000,822 + Pf1N1B4_2664 0.18 +0.4 3,000,923 + Pf1N1B4_2664 0.27 -1.2 3,000,923 + Pf1N1B4_2664 0.27 +0.1 3,000,923 + Pf1N1B4_2664 0.27 -0.7 3,000,923 + Pf1N1B4_2664 0.27 -1.2 3,000,923 + Pf1N1B4_2664 0.27 -1.5 3,000,974 + +1.6 3,000,974 + Pf1N1B4_2664 0.31 -0.4 3,000,975 - +0.1 3,001,046 - Pf1N1B4_2664 0.37 +0.2 3,001,046 - +2.6 3,001,083 + Pf1N1B4_2664 0.41 +0.2 3,001,388 + Pf1N1B4_2664 0.67 -1.9 3,001,388 + Pf1N1B4_2664 0.67 -0.7 3,001,389 - Pf1N1B4_2664 0.67 -0.9 3,001,389 - Pf1N1B4_2664 0.67 -0.2 3,001,389 - Pf1N1B4_2664 0.67 -1.2 3,001,389 - Pf1N1B4_2664 0.67 -1.2 3,001,389 - Pf1N1B4_2664 0.67 +1.0 3,001,389 - Pf1N1B4_2664 0.67 +1.6 3,001,926 + +0.2 3,001,926 + -0.3 3,001,927 - +0.2 3,001,967 + -0.1 3,001,967 + +0.5 3,001,968 - -0.9 3,001,968 - -0.4 3,001,968 - +0.1 3,002,045 - +0.1 3,002,045 - +0.2 3,002,045 - -1.3 3,002,153 - -0.3 3,002,213 + -1.2 3,002,214 - +0.1 3,002,214 - +0.1 3,002,214 - +1.3 3,002,253 + -1.3 3,002,268 + -1.2 3,002,268 + +0.5 3,002,269 - +0.9 3,002,269 - -0.3 3,002,269 - +1.0 3,002,269 - -0.0 3,002,269 - +0.2 3,002,269 - +0.6 3,002,269 - +1.2 3,002,361 + -0.6 3,002,361 + -1.4 3,002,361 + -0.9 3,002,361 + -0.1 3,002,361 + -0.0 3,002,361 + -0.4 3,002,361 + -0.4 3,002,361 + +0.4 3,002,361 + -0.5 3,002,362 - -0.2 3,002,362 - +2.1 3,002,362 - +1.2 3,002,362 - +0.5 3,002,362 - +0.6 3,002,362 - -0.4 3,002,362 - +0.7 3,002,388 - +0.1 3,002,439 - Pf1N1B4_2665 0.11 +1.1 3,002,487 - +1.6 3,002,487 - Pf1N1B4_2665 0.17 +0.1 3,002,488 + Pf1N1B4_2665 0.17 -1.1 3,002,488 + Pf1N1B4_2665 0.17 -2.3 3,002,488 + Pf1N1B4_2665 0.17 -0.6 3,002,489 - Pf1N1B4_2665 0.18 +0.1 3,002,489 - Pf1N1B4_2665 0.18 +0.2 3,002,489 - Pf1N1B4_2665 0.18 -0.7 3,002,489 - Pf1N1B4_2665 0.18 -0.4 3,002,530 + Pf1N1B4_2665 0.23 +1.1 3,002,530 + +0.1 3,002,531 - Pf1N1B4_2665 0.23 -0.4 3,002,531 - Pf1N1B4_2665 0.23 -0.1 3,002,663 + Pf1N1B4_2665 0.41 +0.1 3,002,669 + Pf1N1B4_2665 0.42 -0.9 3,002,669 + Pf1N1B4_2665 0.42 -0.7 3,002,669 + Pf1N1B4_2665 0.42 +0.6 3,002,669 + Pf1N1B4_2665 0.42 +1.2 3,002,669 + Pf1N1B4_2665 0.42 +0.2
Or see this region's nucleotide sequence