Experiment: L-Rhamnose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HSERO_RS20790 and HSERO_RS20795 are separated by 22 nucleotides HSERO_RS20795 and HSERO_RS20800 are separated by 182 nucleotides HSERO_RS20800 and HSERO_RS20805 are separated by 0 nucleotides HSERO_RS20805 and HSERO_RS20810 are separated by 297 nucleotides
HSERO_RS20790: HSERO_RS20790 - cytochrome B559 subunit alpha, at 4,760,998 to 4,762,158
_RS20790
HSERO_RS20795: HSERO_RS20795 - membrane protein, at 4,762,181 to 4,762,651
_RS20795
HSERO_RS20800: HSERO_RS20800 - hypothetical protein, at 4,762,834 to 4,763,061
_RS20800
HSERO_RS20805: HSERO_RS20805 - methyltransferase, at 4,763,062 to 4,764,006
_RS20805
HSERO_RS20810: HSERO_RS20810 - amidophosphoribosyltransferase, at 4,764,304 to 4,765,029
_RS20810
Position (kb) 4763
4764
4765 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 4762.065 kb on + strand at 4762.075 kb on + strand at 4762.075 kb on + strand at 4762.217 kb on + strand at 4762.437 kb on - strand, within HSERO_RS20795 at 4762.438 kb on - strand, within HSERO_RS20795 at 4762.648 kb on + strand at 4762.767 kb on + strand at 4762.834 kb on + strand at 4762.863 kb on + strand, within HSERO_RS20800 at 4762.871 kb on - strand, within HSERO_RS20800 at 4762.887 kb on - strand, within HSERO_RS20800 at 4762.956 kb on + strand, within HSERO_RS20800 at 4762.994 kb on - strand, within HSERO_RS20800 at 4763.055 kb on + strand at 4764.189 kb on + strand at 4764.189 kb on + strand at 4764.353 kb on - strand at 4764.356 kb on - strand at 4764.487 kb on - strand, within HSERO_RS20810 at 4764.716 kb on + strand, within HSERO_RS20810 at 4764.873 kb on - strand, within HSERO_RS20810
Per-strain Table
Position Strand Gene LocusTag Fraction L-Rhamnose (C) remove 4,762,065 + +0.0 4,762,075 + -0.7 4,762,075 + -0.4 4,762,217 + -0.4 4,762,437 - HSERO_RS20795 0.54 -2.8 4,762,438 - HSERO_RS20795 0.55 +0.1 4,762,648 + +0.1 4,762,767 + -0.5 4,762,834 + +1.4 4,762,863 + HSERO_RS20800 0.13 +0.4 4,762,871 - HSERO_RS20800 0.16 +0.7 4,762,887 - HSERO_RS20800 0.23 -0.1 4,762,956 + HSERO_RS20800 0.54 +1.2 4,762,994 - HSERO_RS20800 0.70 +3.8 4,763,055 + +1.1 4,764,189 + -0.9 4,764,189 + -0.0 4,764,353 - +0.5 4,764,356 - +0.6 4,764,487 - HSERO_RS20810 0.25 +0.1 4,764,716 + HSERO_RS20810 0.57 +0.4 4,764,873 - HSERO_RS20810 0.78 -0.9
Or see this region's nucleotide sequence