Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS08810

Experiment: L-Rhamnose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHSERO_RS08800 and HSERO_RS08805 are separated by 144 nucleotidesHSERO_RS08805 and HSERO_RS08810 are separated by 136 nucleotidesHSERO_RS08810 and HSERO_RS08815 are separated by 109 nucleotidesHSERO_RS08815 and HSERO_RS08820 are separated by 119 nucleotidesHSERO_RS08820 and HSERO_RS08825 are separated by 3 nucleotides HSERO_RS08800: HSERO_RS08800 - NAD(P)H quinone oxidoreductase, at 1,995,459 to 1,996,436 _RS08800 HSERO_RS08805: HSERO_RS08805 - triosephosphate isomerase, at 1,996,581 to 1,997,297 _RS08805 HSERO_RS08810: HSERO_RS08810 - preprotein translocase subunit SecG, at 1,997,434 to 1,997,772 _RS08810 HSERO_RS08815: HSERO_RS08815 - tRNA-Leu, at 1,997,882 to 1,997,966 _RS08815 HSERO_RS08820: HSERO_RS08820 - NADH:ubiquinone oxidoreductase subunit A, at 1,998,086 to 1,998,445 _RS08820 HSERO_RS08825: HSERO_RS08825 - NADH dehydrogenase subunit B, at 1,998,449 to 1,998,925 _RS08825 Position (kb) 1997 1998Strain fitness (log2 ratio) -1 0 1at 1996.545 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Rhamnose (C)
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1,996,545 + +1.0

Or see this region's nucleotide sequence