Experiment: L-Rhamnose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HSERO_RS05675 and HSERO_RS05680 overlap by 4 nucleotides HSERO_RS05680 and HSERO_RS05685 are separated by 4 nucleotides HSERO_RS05685 and HSERO_RS05690 are separated by 230 nucleotides HSERO_RS05690 and HSERO_RS05695 are separated by 1 nucleotides
HSERO_RS05675: HSERO_RS05675 - ABC transporter permease, at 1,289,247 to 1,290,203
_RS05675
HSERO_RS05680: HSERO_RS05680 - DNA-directed RNA polymerase subunit alpha, at 1,290,200 to 1,291,081
_RS05680
HSERO_RS05685: HSERO_RS05685 - ABC transporter, at 1,291,086 to 1,293,023
_RS05685
HSERO_RS05690: HSERO_RS05690 - hypothetical protein, at 1,293,254 to 1,293,988
_RS05690
HSERO_RS05695: HSERO_RS05695 - D-amino acid oxidase, at 1,293,990 to 1,295,315
_RS05695
Position (kb) 1291
1292
1293
1294 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 1290.454 kb on + strand, within HSERO_RS05680 at 1290.512 kb on + strand, within HSERO_RS05680 at 1290.842 kb on - strand, within HSERO_RS05680 at 1290.878 kb on - strand, within HSERO_RS05680 at 1291.004 kb on - strand at 1291.029 kb on + strand at 1291.076 kb on + strand at 1291.084 kb on - strand at 1291.084 kb on - strand at 1291.520 kb on - strand, within HSERO_RS05685 at 1291.538 kb on - strand, within HSERO_RS05685 at 1291.543 kb on - strand, within HSERO_RS05685 at 1291.718 kb on - strand at 1291.719 kb on - strand, within HSERO_RS05685 at 1291.906 kb on + strand, within HSERO_RS05685 at 1292.094 kb on - strand, within HSERO_RS05685 at 1292.094 kb on - strand, within HSERO_RS05685 at 1292.317 kb on + strand, within HSERO_RS05685 at 1292.538 kb on + strand, within HSERO_RS05685 at 1292.573 kb on - strand at 1292.604 kb on - strand, within HSERO_RS05685 at 1292.664 kb on + strand, within HSERO_RS05685 at 1292.800 kb on + strand, within HSERO_RS05685 at 1293.045 kb on - strand at 1293.051 kb on - strand at 1293.106 kb on - strand at 1293.269 kb on + strand at 1293.269 kb on + strand at 1293.277 kb on - strand at 1293.279 kb on - strand at 1293.340 kb on - strand, within HSERO_RS05690 at 1293.489 kb on + strand, within HSERO_RS05690 at 1294.010 kb on + strand at 1294.014 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Rhamnose (C) remove 1,290,454 + HSERO_RS05680 0.29 -0.0 1,290,512 + HSERO_RS05680 0.35 +1.3 1,290,842 - HSERO_RS05680 0.73 -0.2 1,290,878 - HSERO_RS05680 0.77 +3.3 1,291,004 - +0.6 1,291,029 + +2.4 1,291,076 + +0.3 1,291,084 - -0.5 1,291,084 - -0.2 1,291,520 - HSERO_RS05685 0.22 -0.3 1,291,538 - HSERO_RS05685 0.23 +0.0 1,291,543 - HSERO_RS05685 0.24 -0.6 1,291,718 - +1.0 1,291,719 - HSERO_RS05685 0.33 +0.6 1,291,906 + HSERO_RS05685 0.42 +0.8 1,292,094 - HSERO_RS05685 0.52 +0.2 1,292,094 - HSERO_RS05685 0.52 -2.2 1,292,317 + HSERO_RS05685 0.64 -2.6 1,292,538 + HSERO_RS05685 0.75 -0.2 1,292,573 - +1.0 1,292,604 - HSERO_RS05685 0.78 -0.0 1,292,664 + HSERO_RS05685 0.81 -0.1 1,292,800 + HSERO_RS05685 0.88 -0.4 1,293,045 - +0.9 1,293,051 - -2.0 1,293,106 - +0.1 1,293,269 + -1.4 1,293,269 + +1.0 1,293,277 - +0.4 1,293,279 - +0.0 1,293,340 - HSERO_RS05690 0.12 +0.3 1,293,489 + HSERO_RS05690 0.32 +0.3 1,294,010 + -1.2 1,294,014 - +0.2
Or see this region's nucleotide sequence