Experiment: L-Rhamnose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HSERO_RS00230 and HSERO_RS00235 are separated by 284 nucleotides HSERO_RS00235 and HSERO_RS00240 are separated by 187 nucleotides
HSERO_RS00230: HSERO_RS00230 - hypothetical protein, at 60,124 to 60,444
_RS00230
HSERO_RS00235: HSERO_RS00235 - MFS transporter, at 60,729 to 62,000
_RS00235
HSERO_RS00240: HSERO_RS00240 - LysR family transcription regulator protein, at 62,188 to 63,078
_RS00240
Position (kb) 60
61
62
63 Strain fitness (log2 ratio) -2
-1
0
1 at 59.935 kb on + strand at 60.241 kb on + strand, within HSERO_RS00230 at 60.708 kb on + strand at 60.896 kb on - strand, within HSERO_RS00235 at 60.954 kb on + strand, within HSERO_RS00235 at 61.089 kb on + strand, within HSERO_RS00235 at 61.128 kb on + strand, within HSERO_RS00235 at 61.236 kb on - strand, within HSERO_RS00235 at 61.591 kb on - strand, within HSERO_RS00235 at 61.640 kb on + strand, within HSERO_RS00235 at 61.648 kb on - strand, within HSERO_RS00235 at 61.809 kb on - strand, within HSERO_RS00235 at 61.809 kb on - strand, within HSERO_RS00235 at 61.817 kb on + strand, within HSERO_RS00235 at 61.833 kb on - strand, within HSERO_RS00235 at 62.028 kb on + strand at 62.053 kb on + strand at 62.174 kb on + strand at 62.174 kb on + strand at 62.174 kb on + strand at 62.182 kb on - strand at 62.182 kb on - strand at 62.300 kb on - strand, within HSERO_RS00240 at 62.364 kb on + strand, within HSERO_RS00240 at 62.407 kb on - strand, within HSERO_RS00240 at 62.562 kb on + strand, within HSERO_RS00240 at 62.746 kb on + strand, within HSERO_RS00240 at 62.871 kb on + strand, within HSERO_RS00240 at 62.907 kb on - strand, within HSERO_RS00240
Per-strain Table
Position Strand Gene LocusTag Fraction L-Rhamnose (C) remove 59,935 + +0.2 60,241 + HSERO_RS00230 0.36 -2.5 60,708 + -0.5 60,896 - HSERO_RS00235 0.13 -0.4 60,954 + HSERO_RS00235 0.18 +0.2 61,089 + HSERO_RS00235 0.28 -0.2 61,128 + HSERO_RS00235 0.31 -0.3 61,236 - HSERO_RS00235 0.40 -0.2 61,591 - HSERO_RS00235 0.68 +0.2 61,640 + HSERO_RS00235 0.72 +0.2 61,648 - HSERO_RS00235 0.72 -0.3 61,809 - HSERO_RS00235 0.85 -0.9 61,809 - HSERO_RS00235 0.85 -0.2 61,817 + HSERO_RS00235 0.86 -1.0 61,833 - HSERO_RS00235 0.87 -0.8 62,028 + -0.3 62,053 + +0.3 62,174 + -1.5 62,174 + +0.3 62,174 + +0.7 62,182 - +0.7 62,182 - -0.6 62,300 - HSERO_RS00240 0.13 -0.4 62,364 + HSERO_RS00240 0.20 -0.5 62,407 - HSERO_RS00240 0.25 -1.7 62,562 + HSERO_RS00240 0.42 -1.2 62,746 + HSERO_RS00240 0.63 +0.1 62,871 + HSERO_RS00240 0.77 -2.6 62,907 - HSERO_RS00240 0.81 -1.1
Or see this region's nucleotide sequence