Experiment: Pectic galactan from potato 5mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS06615 and HMPREF1058_RS06610 overlap by 1 nucleotides HMPREF1058_RS06610 and HMPREF1058_RS06605 are separated by 148 nucleotides HMPREF1058_RS06605 and HMPREF1058_RS06600 are separated by 68 nucleotides
HMPREF1058_RS06615: HMPREF1058_RS06615 - GDP-mannose 4,6-dehydratase, at 436,785 to 437,867
_RS06615
HMPREF1058_RS06610: HMPREF1058_RS06610 - GDP-L-fucose synthase, at 437,867 to 438,943
_RS06610
HMPREF1058_RS06605: HMPREF1058_RS06605 - thiol peroxidase, at 439,092 to 439,595
_RS06605
HMPREF1058_RS06600: HMPREF1058_RS06600 - DedA family protein, at 439,664 to 440,290
_RS06600
Position (kb) 437
438
439 Strain fitness (log2 ratio) -1
0
1
2 at 436.927 kb on - strand, within HMPREF1058_RS06615 at 437.016 kb on - strand, within HMPREF1058_RS06615 at 437.048 kb on + strand, within HMPREF1058_RS06615 at 437.133 kb on - strand, within HMPREF1058_RS06615 at 437.151 kb on - strand at 437.324 kb on + strand, within HMPREF1058_RS06615 at 437.493 kb on + strand, within HMPREF1058_RS06615 at 437.504 kb on + strand, within HMPREF1058_RS06615 at 437.505 kb on - strand, within HMPREF1058_RS06615 at 437.562 kb on + strand, within HMPREF1058_RS06615 at 437.563 kb on - strand, within HMPREF1058_RS06615 at 437.586 kb on - strand, within HMPREF1058_RS06615 at 437.697 kb on + strand, within HMPREF1058_RS06615 at 437.819 kb on + strand at 437.865 kb on + strand at 437.886 kb on + strand at 437.886 kb on + strand at 437.887 kb on - strand at 437.889 kb on - strand at 437.889 kb on - strand at 437.923 kb on + strand at 437.954 kb on - strand at 437.954 kb on - strand at 438.042 kb on - strand, within HMPREF1058_RS06610 at 438.166 kb on - strand, within HMPREF1058_RS06610 at 438.260 kb on + strand, within HMPREF1058_RS06610 at 438.261 kb on - strand, within HMPREF1058_RS06610 at 438.263 kb on - strand, within HMPREF1058_RS06610 at 438.275 kb on + strand, within HMPREF1058_RS06610 at 438.342 kb on - strand, within HMPREF1058_RS06610 at 438.383 kb on - strand, within HMPREF1058_RS06610 at 438.484 kb on + strand, within HMPREF1058_RS06610 at 438.579 kb on + strand, within HMPREF1058_RS06610 at 438.650 kb on + strand, within HMPREF1058_RS06610 at 438.651 kb on - strand, within HMPREF1058_RS06610 at 438.651 kb on - strand, within HMPREF1058_RS06610 at 438.684 kb on - strand, within HMPREF1058_RS06610 at 438.838 kb on + strand at 438.894 kb on + strand at 438.895 kb on - strand at 438.917 kb on + strand at 438.934 kb on + strand at 438.958 kb on - strand at 439.009 kb on + strand at 439.041 kb on + strand at 439.042 kb on - strand at 439.121 kb on - strand at 439.157 kb on + strand, within HMPREF1058_RS06605 at 439.158 kb on - strand, within HMPREF1058_RS06605 at 439.160 kb on - strand, within HMPREF1058_RS06605 at 439.236 kb on + strand, within HMPREF1058_RS06605 at 439.237 kb on - strand, within HMPREF1058_RS06605 at 439.237 kb on - strand, within HMPREF1058_RS06605 at 439.237 kb on - strand, within HMPREF1058_RS06605 at 439.265 kb on + strand, within HMPREF1058_RS06605 at 439.265 kb on + strand, within HMPREF1058_RS06605 at 439.347 kb on - strand, within HMPREF1058_RS06605 at 439.485 kb on - strand, within HMPREF1058_RS06605 at 439.487 kb on - strand, within HMPREF1058_RS06605 at 439.487 kb on - strand, within HMPREF1058_RS06605 at 439.487 kb on - strand, within HMPREF1058_RS06605 at 439.487 kb on - strand, within HMPREF1058_RS06605 at 439.577 kb on + strand at 439.578 kb on - strand at 439.578 kb on - strand at 439.716 kb on - strand at 439.731 kb on - strand, within HMPREF1058_RS06600 at 439.829 kb on - strand, within HMPREF1058_RS06600 at 439.848 kb on + strand, within HMPREF1058_RS06600
Per-strain Table
Position Strand Gene LocusTag Fraction Pectic galactan from potato 5mg/ml (C) remove 436,927 - HMPREF1058_RS06615 0.13 +1.1 437,016 - HMPREF1058_RS06615 0.21 -0.6 437,048 + HMPREF1058_RS06615 0.24 +0.8 437,133 - HMPREF1058_RS06615 0.32 -0.9 437,151 - +0.1 437,324 + HMPREF1058_RS06615 0.50 -1.6 437,493 + HMPREF1058_RS06615 0.65 -0.1 437,504 + HMPREF1058_RS06615 0.66 +0.5 437,505 - HMPREF1058_RS06615 0.66 -0.7 437,562 + HMPREF1058_RS06615 0.72 +1.3 437,563 - HMPREF1058_RS06615 0.72 +0.3 437,586 - HMPREF1058_RS06615 0.74 +1.6 437,697 + HMPREF1058_RS06615 0.84 -0.7 437,819 + -0.5 437,865 + +0.5 437,886 + +0.5 437,886 + -1.6 437,887 - -0.4 437,889 - +1.6 437,889 - -0.2 437,923 + -1.2 437,954 - -1.6 437,954 - +0.9 438,042 - HMPREF1058_RS06610 0.16 -0.6 438,166 - HMPREF1058_RS06610 0.28 +1.8 438,260 + HMPREF1058_RS06610 0.36 -1.7 438,261 - HMPREF1058_RS06610 0.37 +0.1 438,263 - HMPREF1058_RS06610 0.37 +0.2 438,275 + HMPREF1058_RS06610 0.38 +0.7 438,342 - HMPREF1058_RS06610 0.44 +0.3 438,383 - HMPREF1058_RS06610 0.48 +0.0 438,484 + HMPREF1058_RS06610 0.57 +1.1 438,579 + HMPREF1058_RS06610 0.66 -0.7 438,650 + HMPREF1058_RS06610 0.73 +1.3 438,651 - HMPREF1058_RS06610 0.73 -0.5 438,651 - HMPREF1058_RS06610 0.73 +0.4 438,684 - HMPREF1058_RS06610 0.76 +1.5 438,838 + +0.9 438,894 + +1.1 438,895 - +0.5 438,917 + +0.1 438,934 + -0.8 438,958 - +0.2 439,009 + +1.0 439,041 + -0.5 439,042 - -0.8 439,121 - -0.2 439,157 + HMPREF1058_RS06605 0.13 +0.7 439,158 - HMPREF1058_RS06605 0.13 +1.4 439,160 - HMPREF1058_RS06605 0.13 -0.4 439,236 + HMPREF1058_RS06605 0.29 -0.3 439,237 - HMPREF1058_RS06605 0.29 -0.2 439,237 - HMPREF1058_RS06605 0.29 -0.2 439,237 - HMPREF1058_RS06605 0.29 +0.3 439,265 + HMPREF1058_RS06605 0.34 +0.9 439,265 + HMPREF1058_RS06605 0.34 -0.4 439,347 - HMPREF1058_RS06605 0.51 -0.2 439,485 - HMPREF1058_RS06605 0.78 +0.2 439,487 - HMPREF1058_RS06605 0.78 +0.2 439,487 - HMPREF1058_RS06605 0.78 -0.8 439,487 - HMPREF1058_RS06605 0.78 +1.1 439,487 - HMPREF1058_RS06605 0.78 -0.3 439,577 + -0.1 439,578 - +0.3 439,578 - -0.2 439,716 - -0.6 439,731 - HMPREF1058_RS06600 0.11 -1.0 439,829 - HMPREF1058_RS06600 0.26 -0.7 439,848 + HMPREF1058_RS06600 0.29 -1.5
Or see this region's nucleotide sequence