Experiment: a-Cyclodextrin (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_03702 and CCNA_03703 are separated by 148 nucleotides CCNA_03703 and CCNA_03704 are separated by 114 nucleotides CCNA_03704 and CCNA_03705 are separated by 118 nucleotides CCNA_03705 and CCNA_R0089 are separated by 215 nucleotides
CCNA_03702: CCNA_03702 - SSU ribosomal protein S1P, at 3,869,691 to 3,871,400
_03702
CCNA_03703: CCNA_03703 - cytidylate kinase, at 3,871,549 to 3,872,190
_03703
CCNA_03704: CCNA_03704 - 3-phosphoshikimate 1-carboxyvinyltransferase, at 3,872,305 to 3,873,636
_03704
CCNA_03705: CCNA_03705 - hypothetical protein, at 3,873,755 to 3,874,225
_03705
CCNA_R0089: CCNA_R0089 - tRNA-Ala, at 3,874,441 to 3,874,516
_R0089
Position (kb)
3872
3873
3874 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 3872.191 kb on + strand at 3872.191 kb on + strand at 3872.194 kb on - strand at 3872.199 kb on - strand at 3872.215 kb on + strand at 3872.225 kb on + strand at 3872.226 kb on + strand at 3872.233 kb on - strand at 3872.234 kb on - strand at 3872.240 kb on + strand at 3872.240 kb on + strand at 3872.245 kb on - strand at 3872.253 kb on - strand at 3872.271 kb on + strand at 3872.273 kb on - strand at 3872.278 kb on - strand at 3872.279 kb on - strand at 3872.303 kb on + strand at 3872.303 kb on + strand at 3872.303 kb on + strand at 3872.303 kb on + strand at 3872.311 kb on - strand at 3872.311 kb on - strand at 3872.311 kb on - strand at 3872.311 kb on - strand at 3872.311 kb on - strand at 3872.311 kb on - strand at 3872.333 kb on - strand at 3873.610 kb on - strand at 3873.616 kb on + strand at 3873.624 kb on - strand at 3873.691 kb on - strand at 3873.736 kb on + strand at 3873.736 kb on + strand at 3873.737 kb on + strand at 3873.737 kb on + strand at 3873.854 kb on + strand, within CCNA_03705 at 3873.864 kb on + strand, within CCNA_03705 at 3873.875 kb on + strand, within CCNA_03705 at 3873.983 kb on + strand, within CCNA_03705 at 3874.013 kb on + strand, within CCNA_03705 at 3874.159 kb on - strand, within CCNA_03705 at 3874.189 kb on + strand at 3874.255 kb on + strand at 3874.265 kb on + strand at 3874.319 kb on + strand at 3874.584 kb on - strand at 3874.584 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction a-Cyclodextrin (C) remove 3,872,191 + +0.2 3,872,191 + +0.4 3,872,194 - +0.7 3,872,199 - +1.2 3,872,215 + +0.9 3,872,225 + +0.5 3,872,226 + +0.8 3,872,233 - +2.1 3,872,234 - +0.9 3,872,240 + +0.1 3,872,240 + -2.3 3,872,245 - +0.7 3,872,253 - +2.0 3,872,271 + -3.5 3,872,273 - +1.3 3,872,278 - +1.5 3,872,279 - +1.1 3,872,303 + -1.3 3,872,303 + -1.2 3,872,303 + +0.2 3,872,303 + -0.7 3,872,311 - +0.5 3,872,311 - +1.2 3,872,311 - +1.2 3,872,311 - +1.0 3,872,311 - +0.9 3,872,311 - +0.5 3,872,333 - +0.5 3,873,610 - -2.3 3,873,616 + -1.9 3,873,624 - +2.7 3,873,691 - -1.4 3,873,736 + -1.7 3,873,736 + -1.0 3,873,737 + +0.8 3,873,737 + +0.3 3,873,854 + CCNA_03705 0.21 +2.4 3,873,864 + CCNA_03705 0.23 +0.1 3,873,875 + CCNA_03705 0.25 -1.0 3,873,983 + CCNA_03705 0.48 -1.2 3,874,013 + CCNA_03705 0.55 +0.5 3,874,159 - CCNA_03705 0.86 +0.6 3,874,189 + +1.6 3,874,255 + +2.8 3,874,265 + +2.5 3,874,319 + +0.7 3,874,584 - -0.1 3,874,584 - +1.0
Or see this region's nucleotide sequence