Strain Fitness in Caulobacter crescentus NA1000 around CCNA_03704

Experiment: a-Cyclodextrin (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_03702 and CCNA_03703 are separated by 148 nucleotidesCCNA_03703 and CCNA_03704 are separated by 114 nucleotidesCCNA_03704 and CCNA_03705 are separated by 118 nucleotidesCCNA_03705 and CCNA_R0089 are separated by 215 nucleotides CCNA_03702: CCNA_03702 - SSU ribosomal protein S1P, at 3,869,691 to 3,871,400 _03702 CCNA_03703: CCNA_03703 - cytidylate kinase, at 3,871,549 to 3,872,190 _03703 CCNA_03704: CCNA_03704 - 3-phosphoshikimate 1-carboxyvinyltransferase, at 3,872,305 to 3,873,636 _03704 CCNA_03705: CCNA_03705 - hypothetical protein, at 3,873,755 to 3,874,225 _03705 CCNA_R0089: CCNA_R0089 - tRNA-Ala, at 3,874,441 to 3,874,516 _R0089 Position (kb) 3872 3873 3874Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 3872.191 kb on + strandat 3872.191 kb on + strandat 3872.194 kb on - strandat 3872.199 kb on - strandat 3872.215 kb on + strandat 3872.225 kb on + strandat 3872.226 kb on + strandat 3872.233 kb on - strandat 3872.234 kb on - strandat 3872.240 kb on + strandat 3872.240 kb on + strandat 3872.245 kb on - strandat 3872.253 kb on - strandat 3872.271 kb on + strandat 3872.273 kb on - strandat 3872.278 kb on - strandat 3872.279 kb on - strandat 3872.303 kb on + strandat 3872.303 kb on + strandat 3872.303 kb on + strandat 3872.303 kb on + strandat 3872.311 kb on - strandat 3872.311 kb on - strandat 3872.311 kb on - strandat 3872.311 kb on - strandat 3872.311 kb on - strandat 3872.311 kb on - strandat 3872.333 kb on - strandat 3873.610 kb on - strandat 3873.616 kb on + strandat 3873.624 kb on - strandat 3873.691 kb on - strandat 3873.736 kb on + strandat 3873.736 kb on + strandat 3873.737 kb on + strandat 3873.737 kb on + strandat 3873.854 kb on + strand, within CCNA_03705at 3873.864 kb on + strand, within CCNA_03705at 3873.875 kb on + strand, within CCNA_03705at 3873.983 kb on + strand, within CCNA_03705at 3874.013 kb on + strand, within CCNA_03705at 3874.159 kb on - strand, within CCNA_03705at 3874.189 kb on + strandat 3874.255 kb on + strandat 3874.265 kb on + strandat 3874.319 kb on + strandat 3874.584 kb on - strandat 3874.584 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction a-Cyclodextrin (C)
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3,872,191 + +0.2
3,872,191 + +0.4
3,872,194 - +0.7
3,872,199 - +1.2
3,872,215 + +0.9
3,872,225 + +0.5
3,872,226 + +0.8
3,872,233 - +2.1
3,872,234 - +0.9
3,872,240 + +0.1
3,872,240 + -2.3
3,872,245 - +0.7
3,872,253 - +2.0
3,872,271 + -3.5
3,872,273 - +1.3
3,872,278 - +1.5
3,872,279 - +1.1
3,872,303 + -1.3
3,872,303 + -1.2
3,872,303 + +0.2
3,872,303 + -0.7
3,872,311 - +0.5
3,872,311 - +1.2
3,872,311 - +1.2
3,872,311 - +1.0
3,872,311 - +0.9
3,872,311 - +0.5
3,872,333 - +0.5
3,873,610 - -2.3
3,873,616 + -1.9
3,873,624 - +2.7
3,873,691 - -1.4
3,873,736 + -1.7
3,873,736 + -1.0
3,873,737 + +0.8
3,873,737 + +0.3
3,873,854 + CCNA_03705 0.21 +2.4
3,873,864 + CCNA_03705 0.23 +0.1
3,873,875 + CCNA_03705 0.25 -1.0
3,873,983 + CCNA_03705 0.48 -1.2
3,874,013 + CCNA_03705 0.55 +0.5
3,874,159 - CCNA_03705 0.86 +0.6
3,874,189 + +1.6
3,874,255 + +2.8
3,874,265 + +2.5
3,874,319 + +0.7
3,874,584 - -0.1
3,874,584 - +1.0

Or see this region's nucleotide sequence