Strain Fitness in Caulobacter crescentus NA1000 around CCNA_03200

Experiment: a-Cyclodextrin (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	a-Cyclodextrin (C)
3,358,943	+		CCNA_03199	0.24	+0.0
3,359,079	+		CCNA_03199	0.36	+3.3
3,359,108	+		CCNA_03199	0.39	-2.4
3,359,109	+		CCNA_03199	0.39	+0.7
3,359,119	+		CCNA_03199	0.40	-2.3
3,359,119	+		CCNA_03199	0.40	+2.0
3,359,119	+		CCNA_03199	0.40	-2.0
3,359,119	+		CCNA_03199	0.40	-2.1
3,359,127	-		CCNA_03199	0.40	-0.3
3,359,127	-		CCNA_03199	0.40	-0.9
3,359,127	-		CCNA_03199	0.40	-0.7
3,359,127	-		CCNA_03199	0.40	-1.8
3,359,127	-		CCNA_03199	0.40	-2.4
3,359,135	+		CCNA_03199	0.41	-1.9
3,359,135	-		CCNA_03199	0.41	+0.4
3,359,169	+		CCNA_03199	0.44	+0.2
3,359,203	-		CCNA_03199	0.47	+0.1
3,359,203	-		CCNA_03199	0.47	+0.3
3,359,203	-		CCNA_03199	0.47	-0.2
3,359,203	-		CCNA_03199	0.47	-1.3
3,359,204	-		CCNA_03199	0.47	+0.9
3,359,252	-		CCNA_03199	0.51	+1.5
3,359,289	-		CCNA_03199	0.55	+1.1
3,359,296	-		CCNA_03199	0.55	+0.4
3,359,296	-		CCNA_03199	0.55	+1.2
3,359,296	-		CCNA_03199	0.55	+0.5
3,359,328	-		CCNA_03199	0.58	+0.5
3,359,333	-		CCNA_03199	0.58	+0.2
3,359,357	+		CCNA_03199	0.61	+0.3
3,359,387	-		CCNA_03199	0.63	+1.1
3,359,411	+		CCNA_03199	0.65	-0.5
3,359,442	-		CCNA_03199	0.68	+1.5
3,359,469	+		CCNA_03199	0.70	-2.8
3,359,469	+				+2.0
3,359,477	-		CCNA_03199	0.71	+0.8
3,359,477	-		CCNA_03199	0.71	+0.0
3,359,490	+		CCNA_03199	0.72	-0.3
3,359,509	+		CCNA_03199	0.74	-0.3
3,359,542	+		CCNA_03199	0.77	-2.7
3,359,573	-		CCNA_03199	0.79	-0.1
3,359,574	+		CCNA_03199	0.80	-1.8
3,359,608	-		CCNA_03199	0.83	+1.9
3,359,614	+		CCNA_03199	0.83	+3.3
3,359,667	-		CCNA_03199	0.88	-2.3
3,359,675	+		CCNA_03199	0.88	-0.1
3,359,676	+		CCNA_03199	0.89	-0.7
3,359,704	+				+0.8
3,359,715	+				+2.0
3,359,722	-				+2.2
3,359,722	-				-0.6
3,359,722	-				-2.2
3,359,722	-				-0.2
3,359,747	-				-0.0
3,359,774	-				+0.1
3,359,774	-				+0.7
3,359,775	+				-2.7
3,359,783	-				-1.3
3,359,818	+				+0.3
3,359,818	+				+0.7
3,359,826	-				-0.9
3,359,826	-				+0.7
3,359,826	-				+1.6
3,359,826	-				-0.6
3,359,826	-				-0.5
3,359,923	-				+1.2
3,359,934	+				-1.6
3,359,939	+				-1.8
3,359,944	+				-2.1
3,359,954	+				+0.2
3,359,989	-				+0.4
3,360,006	-				-0.0
3,360,021	+				-0.4
3,360,023	-				+1.5
3,360,029	-				+0.5
3,360,029	-				+1.4
3,360,061	-				+0.8
3,360,071	+				-0.5
3,360,071	+				+0.7
3,360,079	-				+1.3
3,360,079	-				+0.5
3,360,094	-		CCNA_03200	0.11	+3.7
3,360,094	-		CCNA_03200	0.11	+0.4
3,360,099	-		CCNA_03200	0.11	+1.8
3,360,127	+		CCNA_03200	0.13	-0.2
3,360,135	-		CCNA_03200	0.13	+0.8
3,360,157	-		CCNA_03200	0.14	+1.0
3,360,180	-		CCNA_03200	0.16	-0.1
3,360,206	-		CCNA_03200	0.17	+0.3
3,360,216	+		CCNA_03200	0.18	-1.2
3,360,225	-		CCNA_03200	0.18	+0.3
3,360,225	-		CCNA_03200	0.18	+0.9
3,360,255	-		CCNA_03200	0.20	+0.4
3,360,305	+		CCNA_03200	0.23	-1.7
3,360,342	-		CCNA_03200	0.25	+0.5
3,360,374	+		CCNA_03200	0.27	-2.6
3,360,460	-		CCNA_03200	0.32	+0.9
3,360,471	+		CCNA_03200	0.33	-2.0
3,360,471	+		CCNA_03200	0.33	+1.2
3,360,493	-		CCNA_03200	0.34	+0.7
3,360,508	+		CCNA_03200	0.35	-0.9
3,360,513	+		CCNA_03200	0.35	-2.1
3,360,513	+		CCNA_03200	0.35	+0.5
3,360,518	+		CCNA_03200	0.35	-0.2
3,360,521	-		CCNA_03200	0.35	+3.4
3,360,526	-		CCNA_03200	0.36	+1.1
3,360,527	-		CCNA_03200	0.36	+2.1
3,360,534	-		CCNA_03200	0.36	+0.4
3,360,534	-		CCNA_03200	0.36	+0.9
3,360,648	+		CCNA_03200	0.43	+0.7
3,360,676	-		CCNA_03200	0.44	-0.1
3,360,686	-		CCNA_03200	0.45	+0.9
3,360,718	-		CCNA_03200	0.47	+2.6
3,360,740	+		CCNA_03200	0.48	-0.0
3,360,754	+		CCNA_03200	0.49	-1.1
3,360,754	+		CCNA_03200	0.49	-0.9
3,360,754	+		CCNA_03200	0.49	+2.7
3,360,754	-		CCNA_03200	0.49	+0.9
3,360,762	-		CCNA_03200	0.49	-0.5
3,360,762	-		CCNA_03200	0.49	+0.0
3,360,774	+		CCNA_03200	0.50	+2.1
3,360,774	+		CCNA_03200	0.50	+1.0
3,360,782	-		CCNA_03200	0.51	-1.3
3,360,782	-		CCNA_03200	0.51	-0.4
3,360,789	+		CCNA_03200	0.51	+0.4
3,360,797	-		CCNA_03200	0.51	-0.9
3,360,797	-		CCNA_03200	0.51	+1.8
3,360,805	-		CCNA_03200	0.52	+1.7
3,360,810	-		CCNA_03200	0.52	+1.0
3,360,853	+		CCNA_03200	0.55	-1.5
3,360,853	+		CCNA_03200	0.55	-0.3
3,360,861	-		CCNA_03200	0.55	+0.0
3,360,861	-		CCNA_03200	0.55	+1.6
3,360,861	-		CCNA_03200	0.55	+0.3
3,360,861	-		CCNA_03200	0.55	+0.8
3,360,861	-		CCNA_03200	0.55	+2.1
3,360,861	-		CCNA_03200	0.55	+0.9
3,360,863	+		CCNA_03200	0.55	-0.7
3,360,863	+		CCNA_03200	0.55	+2.6
3,360,863	+		CCNA_03200	0.55	+1.7
3,360,871	-		CCNA_03200	0.56	-1.0
3,360,871	-		CCNA_03200	0.56	-0.5
3,360,871	-		CCNA_03200	0.56	+0.6
3,360,871	-		CCNA_03200	0.56	+0.8
3,360,871	-		CCNA_03200	0.56	+0.9
3,360,882	-		CCNA_03200	0.56	+1.3
3,360,916	-		CCNA_03200	0.58	+1.1
3,360,955	-		CCNA_03200	0.61	+2.3
3,360,963	+		CCNA_03200	0.61	-0.8
3,360,963	+		CCNA_03200	0.61	-2.4
3,360,964	+		CCNA_03200	0.61	+0.1
3,360,970	-		CCNA_03200	0.61	-0.2
3,360,972	-		CCNA_03200	0.62	+0.7
3,360,972	-		CCNA_03200	0.62	+0.4
3,360,972	-		CCNA_03200	0.62	+0.4
3,360,975	+		CCNA_03200	0.62	-0.7
3,361,004	+		CCNA_03200	0.63	+0.7
3,361,004	+		CCNA_03200	0.63	-0.1
3,361,004	+		CCNA_03200	0.63	-2.1
3,361,004	+		CCNA_03200	0.63	+0.7
3,361,012	-		CCNA_03200	0.64	+0.1
3,361,056	-		CCNA_03200	0.66	+0.2
3,361,069	+		CCNA_03200	0.67	-1.7
3,361,100	-		CCNA_03200	0.69	+0.8
3,361,162	-		CCNA_03200	0.73	+1.2
3,361,164	+		CCNA_03200	0.73	+0.2
3,361,167	-		CCNA_03200	0.73	-1.2
3,361,211	-		CCNA_03200	0.75	-0.6
3,361,228	+		CCNA_03200	0.76	-2.1
3,361,252	-		CCNA_03200	0.78	+1.4
3,361,254	+		CCNA_03200	0.78	-1.3
3,361,283	-		CCNA_03200	0.80	+0.3
3,361,283	-		CCNA_03200	0.80	+1.0
3,361,283	-		CCNA_03200	0.80	+2.0
3,361,299	+		CCNA_03200	0.81	-0.4
3,361,307	-		CCNA_03200	0.81	+2.0
3,361,330	-		CCNA_03200	0.82	+1.2
3,361,335	-		CCNA_03200	0.83	+0.7
3,361,340	-		CCNA_03200	0.83	+1.2
3,361,377	+		CCNA_03200	0.85	-0.8
3,361,377	+		CCNA_03200	0.85	-0.7
3,361,385	-		CCNA_03200	0.86	+0.7
3,361,385	-		CCNA_03200	0.86	+2.0
3,361,385	-		CCNA_03200	0.86	+1.2
3,361,386	-		CCNA_03200	0.86	+0.7
3,361,413	+		CCNA_03200	0.87	-2.8
3,361,418	+		CCNA_03200	0.87	-0.8
3,361,418	+		CCNA_03200	0.87	-0.7
3,361,418	+		CCNA_03200	0.87	-2.8
3,361,426	-		CCNA_03200	0.88	+1.2
3,361,482	-				-0.1
3,361,495	-				+0.7
3,361,504	+				-1.0
3,361,564	-				+2.4
3,361,575	-				-0.4
3,361,579	-				+1.2
3,361,581	-				+1.2
3,361,590	-				-1.0
3,361,628	+				-1.7
3,361,637	-				+1.7
3,361,638	-				+2.1
3,361,692	+				-0.3
3,361,700	-				+2.3
3,361,761	-				-1.5
3,361,781	-				-0.3
3,361,781	-				-1.3
3,361,781	-				-0.6
3,361,808	-				+0.2
3,361,808	-				-1.0
3,361,836	-				-2.5
3,362,006	-		CCNA_03201	0.21	-0.6
3,362,043	-				-0.0
3,362,155	-		CCNA_03201	0.33	-2.1
3,362,189	-		CCNA_03201	0.36	-0.6
3,362,215	+		CCNA_03201	0.38	-1.5
3,362,224	-		CCNA_03201	0.38	-0.9
3,362,224	-		CCNA_03201	0.38	-2.2
3,362,224	-		CCNA_03201	0.38	-2.4
3,362,228	+		CCNA_03201	0.39	+1.0
3,362,229	-		CCNA_03201	0.39	-0.6
3,362,238	+		CCNA_03201	0.39	-0.9
3,362,284	-		CCNA_03201	0.43	-0.6
3,362,327	-		CCNA_03201	0.46	-1.1
3,362,344	-		CCNA_03201	0.48	-1.2
3,362,360	+		CCNA_03201	0.49	+1.4
3,362,370	-		CCNA_03201	0.50	-2.6
3,362,416	-				+1.4
3,362,423	+		CCNA_03201	0.54	-2.1
3,362,426	-		CCNA_03201	0.54	-1.9
3,362,431	-		CCNA_03201	0.54	+1.0
3,362,493	+		CCNA_03201	0.59	-0.3
3,362,501	-		CCNA_03201	0.60	-0.2
3,362,563	-		CCNA_03201	0.65	-2.0
3,362,608	-		CCNA_03201	0.68	-0.6