Strain Fitness in Caulobacter crescentus NA1000 around CCNA_03024

Experiment: a-Cyclodextrin (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	a-Cyclodextrin (C)
3,178,312	+		CCNA_03023	0.64	+0.5
3,178,320	-		CCNA_03023	0.65	+2.0
3,178,320	-		CCNA_03023	0.65	+1.4
3,178,322	+		CCNA_03023	0.65	+0.4
3,178,330	-		CCNA_03023	0.65	+1.7
3,178,340	-		CCNA_03023	0.66	+1.6
3,178,340	-		CCNA_03023	0.66	+1.8
3,178,368	-		CCNA_03023	0.67	+1.9
3,178,381	-		CCNA_03023	0.67	+2.4
3,178,429	+		CCNA_03023	0.70	-0.1
3,178,429	+		CCNA_03023	0.70	-1.6
3,178,429	+		CCNA_03023	0.70	-2.5
3,178,429	+		CCNA_03023	0.70	-3.2
3,178,429	+		CCNA_03023	0.70	-0.8
3,178,455	+		CCNA_03023	0.71	-1.0
3,178,455	+		CCNA_03023	0.71	+0.6
3,178,460	+		CCNA_03023	0.71	+0.5
3,178,460	+		CCNA_03023	0.71	-1.0
3,178,465	+		CCNA_03023	0.71	-0.5
3,178,465	+		CCNA_03023	0.71	+1.3
3,178,468	-		CCNA_03023	0.71	+1.8
3,178,473	-		CCNA_03023	0.72	+2.0
3,178,473	-		CCNA_03023	0.72	+0.6
3,178,494	+		CCNA_03023	0.73	+0.3
3,178,494	+		CCNA_03023	0.73	-0.3
3,178,502	-		CCNA_03023	0.73	+1.7
3,178,504	+		CCNA_03023	0.73	-0.1
3,178,504	+		CCNA_03023	0.73	-0.6
3,178,535	+		CCNA_03023	0.75	-0.5
3,178,535	+		CCNA_03023	0.75	+0.4
3,178,535	+		CCNA_03023	0.75	-1.5
3,178,543	-		CCNA_03023	0.75	+2.0
3,178,543	-		CCNA_03023	0.75	+3.4
3,178,543	-		CCNA_03023	0.75	+2.3
3,178,543	-		CCNA_03023	0.75	+2.5
3,178,543	-		CCNA_03023	0.75	+2.0
3,178,571	-		CCNA_03023	0.76	+0.4
3,178,578	-		CCNA_03023	0.77	+2.2
3,178,598	+		CCNA_03023	0.77	-2.6
3,178,603	+		CCNA_03023	0.78	+1.4
3,178,648	-		CCNA_03023	0.80	+2.2
3,178,649	-		CCNA_03023	0.80	+0.9
3,178,673	+		CCNA_03023	0.81	-2.4
3,178,676	-		CCNA_03023	0.81	+2.5
3,178,725	-		CCNA_03023	0.83	+1.5
3,178,763	-		CCNA_03023	0.85	+1.5
3,178,772	+		CCNA_03023	0.85	-1.5
3,178,780	-		CCNA_03023	0.86	+2.0
3,178,780	-		CCNA_03023	0.86	+2.4
3,178,799	+		CCNA_03023	0.87	+0.6
3,178,799	+		CCNA_03023	0.87	-0.2
3,178,807	-		CCNA_03023	0.87	+1.4
3,178,818	-		CCNA_03023	0.88	+1.1
3,178,841	+		CCNA_03023	0.89	+2.4
3,178,844	-		CCNA_03023	0.89	+2.0
3,178,849	-		CCNA_03023	0.89	+0.0
3,178,849	-		CCNA_03023	0.89	+1.6
3,178,854	-		CCNA_03023	0.89	+1.5
3,178,963	+				-0.5
3,179,020	+				+0.9
3,179,020	+				+0.2
3,179,030	+				+1.2
3,179,038	-				+2.1
3,179,038	-				+0.1
3,179,048	-				-0.1
3,179,055	+				-0.7
3,179,057	+				+0.0
3,179,058	-				+1.4
3,179,069	+				-0.5
3,179,070	-				+1.4
3,179,102	-				-0.1
3,179,171	-				+1.7
3,179,197	+				+3.2
3,179,224	+				-0.0
3,179,232	-				+4.1
3,179,254	+				+0.1
3,179,267	-				+3.0
3,179,277	+				+0.7
3,179,304	+				-1.5
3,179,352	-				+2.7
3,179,394	-				+2.4
3,179,394	-				+2.9
3,179,394	-				+1.9
3,179,446	-		CCNA_03024	0.16	+2.4
3,179,450	+		CCNA_03024	0.16	-1.9
3,179,455	+		CCNA_03024	0.17	+1.9
3,179,458	-		CCNA_03024	0.17	+3.6
3,179,503	+		CCNA_03024	0.22	+0.1
3,179,511	-		CCNA_03024	0.23	+2.6
3,179,511	-		CCNA_03024	0.23	+3.2
3,179,511	-		CCNA_03024	0.23	+2.1
3,179,517	-		CCNA_03024	0.24	+2.3
3,179,517	-		CCNA_03024	0.24	+0.3
3,179,517	-		CCNA_03024	0.24	+3.4
3,179,528	-		CCNA_03024	0.25	-0.4
3,179,545	-		CCNA_03024	0.27	+2.5
3,179,545	-		CCNA_03024	0.27	+2.3
3,179,571	-				+4.5
3,179,572	-		CCNA_03024	0.30	+2.2
3,179,678	-		CCNA_03024	0.42	+2.3
3,179,695	+		CCNA_03024	0.44	+1.1
3,179,695	+		CCNA_03024	0.44	-3.4
3,179,740	+		CCNA_03024	0.49	-0.8
3,179,748	-		CCNA_03024	0.49	+1.5
3,179,748	-		CCNA_03024	0.49	+1.2
3,179,748	-		CCNA_03024	0.49	+2.3
3,179,748	-		CCNA_03024	0.49	+2.6
3,179,748	-		CCNA_03024	0.49	+1.4
3,179,755	+		CCNA_03024	0.50	-1.0
3,179,780	-		CCNA_03024	0.53	+1.0
3,179,780	-		CCNA_03024	0.53	+1.1
3,179,780	-		CCNA_03024	0.53	+1.5
3,179,780	-		CCNA_03024	0.53	+1.9
3,179,780	-		CCNA_03024	0.53	+1.6
3,179,785	+		CCNA_03024	0.54	-0.9
3,179,785	+		CCNA_03024	0.54	-1.5
3,179,793	-		CCNA_03024	0.55	+2.6
3,179,793	-				+3.2
3,179,793	-		CCNA_03024	0.55	+1.7
3,179,793	-		CCNA_03024	0.55	-0.4
3,179,793	-		CCNA_03024	0.55	+1.7
3,179,793	-		CCNA_03024	0.55	+1.7
3,179,848	+		CCNA_03024	0.61	+0.9
3,179,848	+		CCNA_03024	0.61	+0.9
3,179,856	-		CCNA_03024	0.62	+1.6
3,179,856	-		CCNA_03024	0.62	+2.2
3,179,856	-		CCNA_03024	0.62	+1.4
3,179,856	-		CCNA_03024	0.62	+1.2
3,179,914	-		CCNA_03024	0.68	+0.4
3,179,918	+		CCNA_03024	0.69	+0.7
3,179,918	+		CCNA_03024	0.69	-1.2
3,179,936	-		CCNA_03024	0.71	+1.8
3,179,974	+		CCNA_03024	0.75	-0.1
3,179,974	+		CCNA_03024	0.75	-1.0
3,179,980	-		CCNA_03024	0.76	+1.4
3,179,982	-		CCNA_03024	0.76	+1.4
3,180,070	+		CCNA_03024	0.86	+1.9
3,180,078	-		CCNA_03024	0.87	+1.6
3,180,078	-				+3.3
3,180,078	-		CCNA_03024	0.87	+1.9
3,180,078	-		CCNA_03024	0.87	-0.7
3,180,093	+		CCNA_03024	0.88	+2.2
3,180,105	+		CCNA_03024	0.90	-0.2
3,180,149	+				+0.3
3,180,159	+				-0.1
3,180,184	-				-0.0
3,180,188	+				-0.4
3,180,208	-				-1.8
3,180,227	+				+0.6
3,180,240	+				+2.1
3,180,299	+				-2.2
3,180,314	+				+0.3
3,180,317	-				-1.8
3,180,317	-				-1.9
3,180,348	+		CCNA_03025	0.14	-3.6
3,180,356	-		CCNA_03025	0.15	-0.1
3,180,374	+		CCNA_03025	0.19	+0.1
3,180,401	+		CCNA_03025	0.24	-3.0
3,180,401	+		CCNA_03025	0.24	-1.9
3,180,401	+		CCNA_03025	0.24	-3.4
3,180,401	+		CCNA_03025	0.24	-1.5
3,180,409	-		CCNA_03025	0.26	-2.3
3,180,409	-		CCNA_03025	0.26	-1.8
3,180,409	-		CCNA_03025	0.26	-1.8
3,180,409	-		CCNA_03025	0.26	-0.5
3,180,409	-		CCNA_03025	0.26	-1.3
3,180,411	-		CCNA_03025	0.26	+0.3
3,180,411	-		CCNA_03025	0.26	+0.3
3,180,417	+		CCNA_03025	0.27	-1.9
3,180,424	-		CCNA_03025	0.29	-1.8
3,180,424	-		CCNA_03025	0.29	-0.1
3,180,528	+		CCNA_03025	0.49	-1.7
3,180,570	-		CCNA_03025	0.58	-3.4
3,180,582	+		CCNA_03025	0.60	-2.2
3,180,582	+		CCNA_03025	0.60	-2.0
3,180,616	-		CCNA_03025	0.67	-0.7
3,180,616	-		CCNA_03025	0.67	-1.8
3,180,678	-		CCNA_03025	0.79	-0.3
3,180,684	-		CCNA_03025	0.80	+0.9
3,180,752	+				-2.6
3,180,752	+				-3.5
3,180,785	+				-0.4
3,180,793	-				-2.5
3,180,793	-				-2.4
3,180,793	-				-1.9
3,180,793	-				-1.7
3,180,793	-				-0.4
3,180,848	-				-3.0
3,180,967	-		CCNA_03026	0.26	-1.7
3,181,082	-		CCNA_03026	0.43	-1.7
3,181,086	+		CCNA_03026	0.43	+0.6
3,181,092	-		CCNA_03026	0.44	+0.1
3,181,094	-		CCNA_03026	0.45	-2.5
3,181,164	-		CCNA_03026	0.55	-0.5
3,181,195	-		CCNA_03026	0.59	-3.3
3,181,196	+		CCNA_03026	0.59	-2.7