Strain Fitness in Caulobacter crescentus NA1000 around CCNA_03013

Experiment: a-Cyclodextrin (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	a-Cyclodextrin (C)
3,164,972	+		CCNA_03011	0.78	-0.4
3,164,980	-		CCNA_03011	0.79	+1.0
3,164,985	-		CCNA_03011	0.80	-0.8
3,164,985	-		CCNA_03011	0.80	+0.4
3,165,017	-		CCNA_03011	0.86	-1.6
3,165,029	+		CCNA_03011	0.89	-1.1
3,165,039	+				+1.6
3,165,039	+				+2.4
3,165,045	+				-2.4
3,165,045	+				-1.1
3,165,053	-				+1.2
3,165,053	-				-2.5
3,165,053	-				-0.6
3,165,057	-				+0.6
3,165,077	+				-1.5
3,165,104	-				-1.1
3,165,104	-				-0.3
3,165,126	-				-0.5
3,165,126	-				+0.7
3,165,127	-				-0.4
3,165,142	-				+1.9
3,165,145	+				-0.1
3,165,221	+				+1.5
3,165,221	+				+0.6
3,165,221	+				+0.9
3,165,229	-				-1.2
3,165,229	-				-1.9
3,165,267	+				+2.5
3,165,275	-				-0.8
3,165,300	+				+2.4
3,165,300	+				+3.0
3,165,342	+		CCNA_03012	0.15	+3.2
3,165,382	+		CCNA_03012	0.22	+3.2
3,165,424	+		CCNA_03012	0.29	+3.4
3,165,428	+		CCNA_03012	0.30	+2.7
3,165,436	-		CCNA_03012	0.31	-0.6
3,165,469	+		CCNA_03012	0.37	+2.8
3,165,469	+		CCNA_03012	0.37	+3.7
3,165,520	-		CCNA_03012	0.46	-0.7
3,165,625	+		CCNA_03012	0.65	+4.1
3,165,644	+		CCNA_03012	0.68	+3.0
3,165,684	-		CCNA_03012	0.75	-0.8
3,165,692	+		CCNA_03012	0.77	+3.0
3,165,711	+		CCNA_03012	0.80	+2.9
3,165,711	+		CCNA_03012	0.80	+3.2
3,165,711	+		CCNA_03012	0.80	+3.6
3,165,726	+		CCNA_03012	0.83	+4.1
3,165,750	+		CCNA_03012	0.87	+3.4
3,165,797	+				+3.7
3,165,807	+				+3.7
3,165,875	+				+5.3
3,165,879	+				+0.2
3,165,993	-				+0.7
3,166,042	+				+1.8
3,166,049	+				+1.8
3,166,052	+				+2.6
3,166,056	+				+0.5
3,166,064	-				-2.4
3,166,071	-				+1.5
3,166,078	+				-1.5
3,166,078	+				-0.1
3,166,086	-				-1.9
3,166,101	-				-1.8
3,166,179	-		CCNA_03013	0.14	-2.0
3,166,209	+		CCNA_03013	0.15	+0.7
3,166,226	+		CCNA_03013	0.17	+2.1
3,166,320	+		CCNA_03013	0.22	+0.8
3,166,345	+		CCNA_03013	0.24	+0.9
3,166,353	-		CCNA_03013	0.25	+0.6
3,166,353	-		CCNA_03013	0.25	-1.1
3,166,355	+		CCNA_03013	0.25	+0.5
3,166,358	-		CCNA_03013	0.25	-0.2
3,166,399	-		CCNA_03013	0.27	-1.8
3,166,424	+		CCNA_03013	0.29	-0.3
3,166,434	+		CCNA_03013	0.30	+1.6
3,166,434	+		CCNA_03013	0.30	-1.2
3,166,434	+		CCNA_03013	0.30	+0.6
3,166,434	+		CCNA_03013	0.30	+0.2
3,166,434	+		CCNA_03013	0.30	+1.1
3,166,434	+		CCNA_03013	0.30	+1.3
3,166,434	+		CCNA_03013	0.30	+1.9
3,166,434	+		CCNA_03013	0.30	-0.6
3,166,434	+		CCNA_03013	0.30	-1.3
3,166,434	+		CCNA_03013	0.30	-0.1
3,166,434	+		CCNA_03013	0.30	+0.6
3,166,434	+		CCNA_03013	0.30	+3.2
3,166,434	+		CCNA_03013	0.30	+2.0
3,166,442	-		CCNA_03013	0.30	+2.2
3,166,442	-		CCNA_03013	0.30	+1.9
3,166,442	-		CCNA_03013	0.30	+1.4
3,166,448	-		CCNA_03013	0.31	-1.0
3,166,461	+		CCNA_03013	0.31	-2.2
3,166,469	-		CCNA_03013	0.32	-0.8
3,166,483	+		CCNA_03013	0.33	+1.2
3,166,493	-		CCNA_03013	0.33	-1.2
3,166,500	-		CCNA_03013	0.34	-1.5
3,166,530	+		CCNA_03013	0.36	+0.7
3,166,538	-		CCNA_03013	0.36	+1.4
3,166,578	+		CCNA_03013	0.39	+0.9
3,166,595	+		CCNA_03013	0.40	+1.5
3,166,611	-		CCNA_03013	0.41	-0.9
3,166,705	+		CCNA_03013	0.47	+0.8
3,166,796	-		CCNA_03013	0.53	-1.8
3,166,797	+		CCNA_03013	0.53	+1.5
3,166,797	+		CCNA_03013	0.53	+0.8
3,166,842	-		CCNA_03013	0.55	-0.1
3,166,845	+		CCNA_03013	0.56	+1.9
3,166,853	-		CCNA_03013	0.56	+0.1
3,166,854	-		CCNA_03013	0.56	-1.6
3,166,871	+				+0.6
3,166,887	-		CCNA_03013	0.58	+0.4
3,166,897	-				+1.9
3,166,982	-		CCNA_03013	0.64	+0.1
3,167,009	-		CCNA_03013	0.66	+0.9
3,167,016	+		CCNA_03013	0.66	+3.2
3,167,016	+		CCNA_03013	0.66	+1.8
3,167,016	+				+3.4
3,167,016	+		CCNA_03013	0.66	+1.2
3,167,016	+		CCNA_03013	0.66	+1.9
3,167,024	-		CCNA_03013	0.67	-0.4
3,167,024	-		CCNA_03013	0.67	+2.6
3,167,024	-		CCNA_03013	0.67	-1.1
3,167,136	-		CCNA_03013	0.74	-0.1
3,167,168	-		CCNA_03013	0.76	+1.0
3,167,202	-		CCNA_03013	0.78	-1.4
3,167,222	+		CCNA_03013	0.79	+1.7
3,167,230	-		CCNA_03013	0.80	+1.6
3,167,249	-		CCNA_03013	0.81	-0.2
3,167,249	-		CCNA_03013	0.81	-0.7
3,167,289	-		CCNA_03013	0.84	+0.2
3,167,304	+		CCNA_03013	0.85	+1.5
3,167,316	+		CCNA_03013	0.85	+2.0
3,167,324	-		CCNA_03013	0.86	-1.2
3,167,350	+		CCNA_03013	0.88	+2.9
3,167,475	+				+0.8
3,167,475	+				+1.8
3,167,483	-				-1.9
3,167,542	+				+1.0
3,167,550	-				+0.2
3,167,561	+				+1.9
3,167,641	+				-0.4
3,167,641	+				+1.0
3,167,641	+				-0.6
3,167,649	-				+2.5
3,167,649	-				+1.3
3,167,649	-				-0.0
3,167,649	-				+0.9
3,167,649	-				-0.4
3,167,649	-				-0.9
3,167,649	-				+0.9
3,167,649	-				+0.1
3,167,658	-		CCNA_03014	0.10	+1.3
3,167,668	-		CCNA_03014	0.12	+1.8
3,167,668	-		CCNA_03014	0.12	+1.3
3,167,677	+		CCNA_03014	0.13	-0.3
3,167,685	-		CCNA_03014	0.13	-0.0
3,167,685	-		CCNA_03014	0.13	-1.2
3,167,704	+		CCNA_03014	0.16	-1.0
3,167,704	+		CCNA_03014	0.16	-1.8
3,167,739	+		CCNA_03014	0.19	-2.3
3,167,740	-		CCNA_03014	0.20	+0.5
3,167,745	-		CCNA_03014	0.20	+1.0
3,167,774	-		CCNA_03014	0.23	-0.5
3,167,794	+		CCNA_03014	0.26	-3.0
3,167,799	+		CCNA_03014	0.26	-0.9
3,167,824	-		CCNA_03014	0.29	+1.4
3,167,843	-				+0.9
3,167,843	-		CCNA_03014	0.31	+0.0
3,167,843	-		CCNA_03014	0.31	+0.4
3,167,871	+		CCNA_03014	0.34	+0.1
3,167,871	+		CCNA_03014	0.34	-2.0
3,167,910	-		CCNA_03014	0.39	+0.6
3,167,926	-		CCNA_03014	0.40	+4.2
3,167,940	-		CCNA_03014	0.42	-0.3
3,168,048	-		CCNA_03014	0.54	-1.1
3,168,069	+		CCNA_03014	0.56	-2.6
3,168,115	+		CCNA_03014	0.62	-0.3
3,168,116	+		CCNA_03014	0.62	+0.6
3,168,184	+		CCNA_03014	0.69	-1.9
3,168,184	+		CCNA_03014	0.69	-0.4
3,168,190	-		CCNA_03014	0.70	-0.5
3,168,192	-		CCNA_03014	0.70	-1.0
3,168,192	-		CCNA_03014	0.70	-0.2
3,168,409	+				+0.8
3,168,452	+				-0.3
3,168,463	+		CCNA_03015	0.14	+0.2
3,168,499	-		CCNA_03015	0.28	+1.7
3,168,504	+		CCNA_03015	0.30	+0.4
3,168,504	+		CCNA_03015	0.30	-0.5
3,168,512	-		CCNA_03015	0.33	-0.4
3,168,512	-		CCNA_03015	0.33	-1.3
3,168,512	-		CCNA_03015	0.33	+0.3