Strain Fitness in Caulobacter crescentus NA1000 around CCNA_02999

Experiment: a-Cyclodextrin (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	a-Cyclodextrin (C)
3,152,530	+				+0.1
3,152,541	+				-0.2
3,152,578	+				-2.6
3,152,578	-				+1.2
3,152,579	+				-0.8
3,152,587	-				+1.5
3,152,600	+				+0.2
3,152,629	+		CCNA_02997	0.10	-1.2
3,152,629	+		CCNA_02997	0.10	-0.4
3,152,637	-		CCNA_02997	0.14	+2.0
3,152,674	-		CCNA_02997	0.32	+0.6
3,152,676	-		CCNA_02997	0.33	+1.1
3,152,705	-		CCNA_02997	0.47	+1.0
3,152,758	+		CCNA_02997	0.72	-1.8
3,152,759	-		CCNA_02997	0.72	+1.3
3,152,759	-		CCNA_02997	0.72	+1.4
3,152,770	+		CCNA_02997	0.78	-1.8
3,152,770	-		CCNA_02997	0.78	+1.7
3,152,783	-		CCNA_02997	0.84	+1.0
3,152,785	-		CCNA_02997	0.85	+1.8
3,152,842	-				+1.7
3,153,062	-				-1.8
3,153,066	+				-1.1
3,153,089	-				-1.7
3,153,089	-				-1.6
3,153,089	-				-0.2
3,153,207	-		CCNA_03904	0.23	+0.2
3,153,213	+		CCNA_03904	0.27	+1.5
3,153,222	+		CCNA_03904	0.32	-2.2
3,153,230	-		CCNA_03904	0.37	-0.3
3,153,263	+		CCNA_03904	0.57	-2.4
3,153,289	-		CCNA_03904	0.73	+1.0
3,153,308	+		CCNA_03904	0.84	+0.7
3,153,329	+				+0.0
3,153,347	-				-0.0
3,153,377	+				+1.3
3,153,474	+				-0.2
3,153,474	+				+0.3
3,153,482	-				-1.1
3,153,482	-				-2.2
3,153,482	-				-2.0
3,153,487	+				+0.6
3,153,487	+				+0.6
3,153,487	+				-0.2
3,153,489	+				+0.9
3,153,495	-				-0.0
3,153,495	-				-0.6
3,153,495	-				-0.4
3,153,497	-				+0.4
3,153,512	+				+1.0
3,153,517	+				+3.4
3,153,546	+				+1.1
3,153,546	+				+2.7
3,153,554	-				-2.0
3,153,554	-				-1.0
3,153,554	-				+0.4
3,153,554	-				-0.8
3,153,554	-				-0.0
3,153,554	-				+1.2
3,153,583	-		CCNA_02999	0.11	+0.2
3,153,646	+		CCNA_02999	0.19	-0.3
3,153,666	+		CCNA_02999	0.22	-0.5
3,153,727	+		CCNA_02999	0.29	+1.6
3,153,786	+		CCNA_02999	0.37	-0.9
3,153,792	+		CCNA_02999	0.38	-2.8
3,153,794	-		CCNA_02999	0.38	+0.9
3,153,794	-		CCNA_02999	0.38	-0.5
3,153,807	+		CCNA_02999	0.39	-2.4
3,153,807	+		CCNA_02999	0.39	-1.6
3,153,836	-		CCNA_02999	0.43	-1.0
3,153,858	-		CCNA_02999	0.46	+3.6
3,153,859	-		CCNA_02999	0.46	+1.4
3,153,869	-		CCNA_02999	0.47	+1.2
3,153,886	-		CCNA_02999	0.49	+0.3
3,153,901	-		CCNA_02999	0.51	+0.7
3,153,901	-		CCNA_02999	0.51	-0.1
3,153,901	-		CCNA_02999	0.51	+0.2
3,153,944	+		CCNA_02999	0.57	-1.5
3,153,950	+		CCNA_02999	0.58	-3.5
3,153,950	+		CCNA_02999	0.58	-2.6
3,153,959	-		CCNA_02999	0.59	+0.9
3,153,960	+		CCNA_02999	0.59	+3.0
3,153,973	-		CCNA_02999	0.61	+2.5
3,153,979	+		CCNA_02999	0.61	-0.2
3,153,987	-		CCNA_02999	0.62	+0.4
3,154,022	+		CCNA_02999	0.67	-0.8
3,154,022	+		CCNA_02999	0.67	-2.5
3,154,030	-		CCNA_02999	0.68	+0.8
3,154,043	+		CCNA_02999	0.69	-2.5
3,154,044	+		CCNA_02999	0.70	-0.5
3,154,044	+		CCNA_02999	0.70	+1.0
3,154,044	+		CCNA_02999	0.70	+0.5
3,154,052	-		CCNA_02999	0.71	+0.1
3,154,052	-		CCNA_02999	0.71	+0.7
3,154,091	+		CCNA_02999	0.76	-0.5
3,154,115	+		CCNA_02999	0.79	+1.4
3,154,124	-		CCNA_02999	0.80	-0.9
3,154,134	-		CCNA_02999	0.81	+0.8
3,154,146	+		CCNA_02999	0.83	+0.8
3,154,244	-				-1.2
3,154,300	-				-0.5
3,154,337	-				+1.1
3,154,338	-				-0.2
3,154,384	-		CCNA_03000	0.12	-1.1
3,154,397	+		CCNA_03000	0.14	+1.5
3,154,405	-		CCNA_03000	0.15	+0.4
3,154,430	+		CCNA_03000	0.18	-0.0
3,154,430	+		CCNA_03000	0.18	-0.3
3,154,430	+		CCNA_03000	0.18	+1.2
3,154,438	-		CCNA_03000	0.19	+1.4
3,154,438	-		CCNA_03000	0.19	-0.2
3,154,438	-		CCNA_03000	0.19	-0.2
3,154,449	-		CCNA_03000	0.20	-0.5
3,154,471	-		CCNA_03000	0.23	+0.5
3,154,491	-		CCNA_03000	0.25	-0.8
3,154,491	-		CCNA_03000	0.25	+0.3
3,154,496	-		CCNA_03000	0.26	-1.5
3,154,496	-		CCNA_03000	0.26	-0.3
3,154,496	-		CCNA_03000	0.26	-2.7
3,154,522	+		CCNA_03000	0.29	-1.4
3,154,553	+		CCNA_03000	0.33	-0.9
3,154,630	+		CCNA_03000	0.42	-1.1
3,154,638	-		CCNA_03000	0.43	+1.1
3,154,645	+		CCNA_03000	0.43	-2.1
3,154,713	+		CCNA_03000	0.51	-0.5
3,154,722	-		CCNA_03000	0.53	-0.0
3,154,722	-		CCNA_03000	0.53	+2.1
3,154,728	+		CCNA_03000	0.53	-1.5
3,154,757	+		CCNA_03000	0.57	-1.4
3,154,757	+		CCNA_03000	0.57	-1.2
3,154,772	+		CCNA_03000	0.58	-1.2
3,154,780	-		CCNA_03000	0.59	-1.8
3,154,780	-		CCNA_03000	0.59	-3.4
3,154,780	-		CCNA_03000	0.59	-0.2
3,154,780	-		CCNA_03000	0.59	+0.1
3,154,780	-		CCNA_03000	0.59	+0.1
3,154,780	-		CCNA_03000	0.59	+0.4
3,154,828	-		CCNA_03000	0.65	-0.7
3,154,833	-		CCNA_03000	0.66	-0.8
3,154,890	+		CCNA_03000	0.72	-1.5
3,154,896	+		CCNA_03000	0.73	+0.5
3,154,896	+		CCNA_03000	0.73	+0.3
3,154,904	-		CCNA_03000	0.74	+1.0
3,154,904	-		CCNA_03000	0.74	-0.8
3,154,904	-		CCNA_03000	0.74	+1.1
3,154,908	+		CCNA_03000	0.75	+1.4
3,154,916	-		CCNA_03000	0.76	+2.0
3,154,924	+		CCNA_03000	0.77	-0.3
3,154,932	+		CCNA_03000	0.77	-2.4
3,154,949	+		CCNA_03000	0.79	-0.8
3,154,985	-		CCNA_03000	0.84	+0.3
3,155,000	+		CCNA_03000	0.86	+0.1
3,155,051	+				+0.2
3,155,059	-				-2.6
3,155,061	-				+0.1
3,155,061	-				-0.3
3,155,078	-				+1.5
3,155,085	+				-0.3
3,155,085	+				-1.1
3,155,085	+				+1.1
3,155,091	+				-0.3
3,155,093	-				-2.1
3,155,093	-				-0.4
3,155,093	-				-2.0
3,155,093	-				-1.9
3,155,099	-				-1.6
3,155,117	-				-0.6
3,155,125	-				+3.5
3,155,143	+				+2.0
3,155,151	-				-0.9
3,155,154	+				-1.5
3,155,193	-				-1.6
3,155,198	-				+1.0
3,155,198	-				+2.3
3,155,205	-				+1.0
3,155,205	-				-0.2
3,155,221	+				-1.4
3,155,222	-				+1.6
3,155,229	-				+0.9
3,155,230	+				-0.5
3,155,231	-				+1.5
3,155,233	-				+0.8
3,155,238	-				+2.5