Experiment: a-Cyclodextrin (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_02993 and CCNA_02994 are separated by 177 nucleotides CCNA_02994 and CCNA_02995 are separated by 502 nucleotides
CCNA_02993: CCNA_02993 - NADH-ubiquinone oxidoreductase, at 3,145,387 to 3,146,679
_02993
CCNA_02994: CCNA_02994 - carbamoyl-phosphate synthase large chain, at 3,146,857 to 3,150,156
_02994
CCNA_02995: CCNA_02995 - glutathione S-transferase, at 3,150,659 to 3,151,312
_02995
Position (kb)
3146
3147
3148
3149
3150
3151 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3
4 at 3145.924 kb on - strand, within CCNA_02993 at 3145.929 kb on - strand, within CCNA_02993 at 3145.951 kb on - strand, within CCNA_02993 at 3145.951 kb on - strand, within CCNA_02993 at 3146.022 kb on + strand, within CCNA_02993 at 3146.029 kb on + strand, within CCNA_02993 at 3146.079 kb on - strand, within CCNA_02993 at 3146.154 kb on - strand, within CCNA_02993 at 3146.154 kb on - strand, within CCNA_02993 at 3146.154 kb on - strand, within CCNA_02993 at 3146.184 kb on + strand, within CCNA_02993 at 3146.192 kb on - strand, within CCNA_02993 at 3146.192 kb on - strand, within CCNA_02993 at 3146.197 kb on + strand, within CCNA_02993 at 3146.197 kb on + strand, within CCNA_02993 at 3146.197 kb on - strand, within CCNA_02993 at 3146.250 kb on + strand, within CCNA_02993 at 3146.255 kb on + strand, within CCNA_02993 at 3146.255 kb on + strand, within CCNA_02993 at 3146.255 kb on + strand, within CCNA_02993 at 3146.255 kb on + strand, within CCNA_02993 at 3146.258 kb on - strand, within CCNA_02993 at 3146.258 kb on - strand, within CCNA_02993 at 3146.260 kb on + strand, within CCNA_02993 at 3146.263 kb on - strand, within CCNA_02993 at 3146.263 kb on - strand, within CCNA_02993 at 3146.263 kb on - strand, within CCNA_02993 at 3146.268 kb on - strand, within CCNA_02993 at 3146.268 kb on - strand, within CCNA_02993 at 3146.311 kb on + strand, within CCNA_02993 at 3146.311 kb on + strand, within CCNA_02993 at 3146.362 kb on - strand, within CCNA_02993 at 3146.380 kb on - strand, within CCNA_02993 at 3146.386 kb on + strand, within CCNA_02993 at 3146.389 kb on - strand, within CCNA_02993 at 3146.394 kb on - strand, within CCNA_02993 at 3146.416 kb on - strand, within CCNA_02993 at 3146.446 kb on + strand, within CCNA_02993 at 3146.454 kb on - strand, within CCNA_02993 at 3146.454 kb on - strand, within CCNA_02993 at 3146.475 kb on - strand, within CCNA_02993 at 3146.540 kb on + strand, within CCNA_02993 at 3146.609 kb on - strand at 3146.634 kb on + strand at 3146.634 kb on + strand at 3146.674 kb on - strand at 3146.738 kb on - strand at 3146.787 kb on - strand at 3146.824 kb on + strand at 3146.832 kb on - strand at 3146.893 kb on - strand at 3150.164 kb on - strand at 3150.276 kb on + strand at 3150.276 kb on + strand at 3150.276 kb on + strand at 3150.276 kb on + strand at 3150.276 kb on + strand at 3150.276 kb on + strand at 3150.276 kb on + strand at 3150.276 kb on + strand at 3150.276 kb on + strand at 3150.276 kb on + strand at 3150.276 kb on + strand at 3150.284 kb on - strand at 3150.284 kb on - strand at 3150.284 kb on - strand at 3150.284 kb on - strand at 3150.284 kb on - strand at 3150.284 kb on - strand at 3150.284 kb on - strand at 3150.284 kb on - strand at 3150.284 kb on - strand at 3150.290 kb on + strand at 3150.290 kb on + strand at 3150.298 kb on - strand at 3150.312 kb on + strand at 3150.331 kb on - strand at 3150.353 kb on + strand at 3150.361 kb on - strand at 3150.364 kb on - strand at 3150.370 kb on + strand at 3150.379 kb on + strand at 3150.381 kb on + strand at 3150.383 kb on + strand at 3150.393 kb on + strand at 3150.393 kb on + strand at 3150.393 kb on + strand at 3150.393 kb on + strand at 3150.393 kb on + strand at 3150.393 kb on + strand at 3150.401 kb on - strand at 3150.401 kb on - strand at 3150.401 kb on - strand at 3150.401 kb on - strand at 3150.401 kb on - strand at 3150.401 kb on - strand at 3150.401 kb on - strand at 3150.401 kb on - strand at 3150.401 kb on - strand at 3150.401 kb on - strand at 3150.401 kb on - strand at 3150.401 kb on - strand at 3150.401 kb on - strand at 3150.401 kb on - strand at 3150.403 kb on - strand at 3150.406 kb on + strand at 3150.406 kb on + strand at 3150.406 kb on + strand at 3150.414 kb on - strand at 3150.414 kb on - strand at 3150.414 kb on - strand at 3150.414 kb on - strand at 3150.471 kb on - strand at 3150.488 kb on + strand at 3150.540 kb on + strand at 3150.546 kb on - strand at 3150.573 kb on - strand at 3150.574 kb on - strand at 3150.575 kb on + strand at 3150.583 kb on - strand at 3150.583 kb on - strand at 3150.583 kb on - strand at 3150.583 kb on - strand at 3150.583 kb on - strand at 3150.583 kb on - strand at 3150.585 kb on + strand at 3150.593 kb on - strand at 3150.593 kb on - strand at 3150.593 kb on - strand at 3150.620 kb on + strand at 3150.644 kb on + strand at 3150.650 kb on - strand at 3150.652 kb on - strand at 3150.678 kb on + strand at 3150.682 kb on + strand at 3150.685 kb on - strand at 3150.685 kb on - strand at 3150.685 kb on - strand at 3150.690 kb on - strand at 3150.737 kb on + strand, within CCNA_02995 at 3150.749 kb on - strand, within CCNA_02995 at 3150.754 kb on - strand, within CCNA_02995 at 3150.754 kb on - strand at 3150.757 kb on + strand, within CCNA_02995 at 3150.757 kb on + strand, within CCNA_02995 at 3150.765 kb on - strand, within CCNA_02995 at 3150.765 kb on - strand, within CCNA_02995 at 3150.767 kb on + strand, within CCNA_02995 at 3150.776 kb on + strand, within CCNA_02995 at 3150.779 kb on - strand, within CCNA_02995 at 3150.787 kb on + strand, within CCNA_02995 at 3150.795 kb on - strand, within CCNA_02995 at 3150.849 kb on + strand, within CCNA_02995 at 3150.851 kb on + strand, within CCNA_02995 at 3150.867 kb on - strand, within CCNA_02995 at 3150.878 kb on + strand, within CCNA_02995 at 3150.883 kb on + strand, within CCNA_02995 at 3150.888 kb on + strand, within CCNA_02995 at 3150.898 kb on + strand, within CCNA_02995 at 3150.937 kb on - strand, within CCNA_02995 at 3150.946 kb on + strand, within CCNA_02995 at 3150.970 kb on - strand, within CCNA_02995 at 3150.980 kb on - strand, within CCNA_02995 at 3150.986 kb on + strand, within CCNA_02995 at 3150.994 kb on - strand, within CCNA_02995 at 3151.027 kb on + strand, within CCNA_02995 at 3151.027 kb on + strand, within CCNA_02995 at 3151.027 kb on + strand, within CCNA_02995 at 3151.027 kb on + strand, within CCNA_02995 at 3151.027 kb on + strand, within CCNA_02995 at 3151.027 kb on + strand, within CCNA_02995 at 3151.027 kb on + strand, within CCNA_02995 at 3151.027 kb on + strand, within CCNA_02995 at 3151.030 kb on - strand, within CCNA_02995 at 3151.035 kb on - strand, within CCNA_02995 at 3151.035 kb on - strand, within CCNA_02995 at 3151.035 kb on - strand, within CCNA_02995 at 3151.035 kb on - strand, within CCNA_02995 at 3151.035 kb on - strand, within CCNA_02995 at 3151.035 kb on - strand, within CCNA_02995 at 3151.035 kb on - strand, within CCNA_02995 at 3151.040 kb on - strand, within CCNA_02995 at 3151.048 kb on + strand, within CCNA_02995 at 3151.048 kb on + strand, within CCNA_02995 at 3151.048 kb on + strand, within CCNA_02995 at 3151.048 kb on + strand, within CCNA_02995 at 3151.048 kb on + strand, within CCNA_02995 at 3151.048 kb on + strand, within CCNA_02995 at 3151.048 kb on + strand, within CCNA_02995 at 3151.048 kb on + strand, within CCNA_02995 at 3151.048 kb on + strand, within CCNA_02995 at 3151.056 kb on - strand, within CCNA_02995 at 3151.056 kb on - strand, within CCNA_02995 at 3151.056 kb on - strand, within CCNA_02995 at 3151.056 kb on - strand, within CCNA_02995 at 3151.056 kb on - strand, within CCNA_02995 at 3151.067 kb on - strand, within CCNA_02995 at 3151.087 kb on + strand, within CCNA_02995 at 3151.113 kb on + strand, within CCNA_02995 at 3151.118 kb on - strand, within CCNA_02995
Per-strain Table
Position Strand Gene LocusTag Fraction a-Cyclodextrin (C) remove 3,145,924 - CCNA_02993 0.42 -1.3 3,145,929 - CCNA_02993 0.42 +0.3 3,145,951 - CCNA_02993 0.44 +3.7 3,145,951 - CCNA_02993 0.44 +0.8 3,146,022 + CCNA_02993 0.49 -0.4 3,146,029 + CCNA_02993 0.50 -0.9 3,146,079 - CCNA_02993 0.54 +2.0 3,146,154 - CCNA_02993 0.59 -2.2 3,146,154 - CCNA_02993 0.59 +1.9 3,146,154 - CCNA_02993 0.59 +0.4 3,146,184 + CCNA_02993 0.62 +0.5 3,146,192 - CCNA_02993 0.62 -0.2 3,146,192 - CCNA_02993 0.62 -0.1 3,146,197 + CCNA_02993 0.63 +0.6 3,146,197 + CCNA_02993 0.63 -1.2 3,146,197 - CCNA_02993 0.63 +1.4 3,146,250 + CCNA_02993 0.67 -1.2 3,146,255 + CCNA_02993 0.67 -1.1 3,146,255 + CCNA_02993 0.67 -0.5 3,146,255 + CCNA_02993 0.67 +1.4 3,146,255 + CCNA_02993 0.67 +0.8 3,146,258 - CCNA_02993 0.67 +2.7 3,146,258 - CCNA_02993 0.67 +2.5 3,146,260 + CCNA_02993 0.68 -1.7 3,146,263 - CCNA_02993 0.68 +0.7 3,146,263 - CCNA_02993 0.68 +0.3 3,146,263 - CCNA_02993 0.68 +0.9 3,146,268 - CCNA_02993 0.68 +0.1 3,146,268 - CCNA_02993 0.68 -0.1 3,146,311 + CCNA_02993 0.71 +1.2 3,146,311 + CCNA_02993 0.71 -0.9 3,146,362 - CCNA_02993 0.75 +1.5 3,146,380 - CCNA_02993 0.77 +0.8 3,146,386 + CCNA_02993 0.77 +1.4 3,146,389 - CCNA_02993 0.77 +2.3 3,146,394 - CCNA_02993 0.78 +1.8 3,146,416 - CCNA_02993 0.80 +1.8 3,146,446 + CCNA_02993 0.82 -0.7 3,146,454 - CCNA_02993 0.83 +1.0 3,146,454 - CCNA_02993 0.83 +4.4 3,146,475 - CCNA_02993 0.84 +0.7 3,146,540 + CCNA_02993 0.89 -1.1 3,146,609 - -0.2 3,146,634 + +0.4 3,146,634 + -2.1 3,146,674 - +1.3 3,146,738 - +1.2 3,146,787 - +2.0 3,146,824 + +0.1 3,146,832 - +2.3 3,146,893 - +2.4 3,150,164 - +0.8 3,150,276 + +1.3 3,150,276 + +0.1 3,150,276 + +0.1 3,150,276 + +1.8 3,150,276 + +3.7 3,150,276 + +0.4 3,150,276 + +1.6 3,150,276 + +0.8 3,150,276 + -0.6 3,150,276 + +0.9 3,150,276 + +0.7 3,150,284 - +0.0 3,150,284 - -1.8 3,150,284 - -1.3 3,150,284 - -1.7 3,150,284 - -0.2 3,150,284 - +0.8 3,150,284 - -1.1 3,150,284 - +0.7 3,150,284 - -1.5 3,150,290 + +1.1 3,150,290 + -0.4 3,150,298 - -0.7 3,150,312 + -0.7 3,150,331 - -2.1 3,150,353 + +1.3 3,150,361 - -0.8 3,150,364 - +1.0 3,150,370 + +0.9 3,150,379 + +0.0 3,150,381 + -1.8 3,150,383 + +0.7 3,150,393 + +0.4 3,150,393 + -0.7 3,150,393 + -1.8 3,150,393 + +0.5 3,150,393 + +1.0 3,150,393 + +0.2 3,150,401 - +0.8 3,150,401 - -1.0 3,150,401 - +1.4 3,150,401 - -1.0 3,150,401 - -1.1 3,150,401 - +1.7 3,150,401 - +0.5 3,150,401 - -0.7 3,150,401 - -1.0 3,150,401 - -1.6 3,150,401 - +0.5 3,150,401 - +0.2 3,150,401 - -1.8 3,150,401 - +1.1 3,150,403 - +0.4 3,150,406 + -0.1 3,150,406 + +1.9 3,150,406 + +1.3 3,150,414 - +2.0 3,150,414 - -0.5 3,150,414 - -0.1 3,150,414 - -0.8 3,150,471 - -1.3 3,150,488 + -0.8 3,150,540 + -1.0 3,150,546 - +0.2 3,150,573 - +0.9 3,150,574 - +1.1 3,150,575 + -0.1 3,150,583 - -0.7 3,150,583 - +1.1 3,150,583 - -0.2 3,150,583 - -0.3 3,150,583 - +0.6 3,150,583 - +1.7 3,150,585 + -0.7 3,150,593 - -0.9 3,150,593 - +0.7 3,150,593 - +1.3 3,150,620 + -0.2 3,150,644 + -1.4 3,150,650 - +0.2 3,150,652 - +0.6 3,150,678 + -3.0 3,150,682 + -1.1 3,150,685 - -0.2 3,150,685 - +0.7 3,150,685 - +0.6 3,150,690 - +1.6 3,150,737 + CCNA_02995 0.12 +1.6 3,150,749 - CCNA_02995 0.14 -0.1 3,150,754 - CCNA_02995 0.15 +0.7 3,150,754 - +0.7 3,150,757 + CCNA_02995 0.15 -1.5 3,150,757 + CCNA_02995 0.15 +1.4 3,150,765 - CCNA_02995 0.16 +1.6 3,150,765 - CCNA_02995 0.16 +0.6 3,150,767 + CCNA_02995 0.17 -0.9 3,150,776 + CCNA_02995 0.18 +0.7 3,150,779 - CCNA_02995 0.18 -1.4 3,150,787 + CCNA_02995 0.20 +2.6 3,150,795 - CCNA_02995 0.21 -0.4 3,150,849 + CCNA_02995 0.29 +1.5 3,150,851 + CCNA_02995 0.29 +0.2 3,150,867 - CCNA_02995 0.32 +0.4 3,150,878 + CCNA_02995 0.33 +1.0 3,150,883 + CCNA_02995 0.34 +2.1 3,150,888 + CCNA_02995 0.35 +1.8 3,150,898 + CCNA_02995 0.37 -1.8 3,150,937 - CCNA_02995 0.43 -1.3 3,150,946 + CCNA_02995 0.44 -1.3 3,150,970 - CCNA_02995 0.48 -0.5 3,150,980 - CCNA_02995 0.49 +0.5 3,150,986 + CCNA_02995 0.50 -1.2 3,150,994 - CCNA_02995 0.51 +0.0 3,151,027 + CCNA_02995 0.56 -0.4 3,151,027 + CCNA_02995 0.56 +1.1 3,151,027 + CCNA_02995 0.56 -1.6 3,151,027 + CCNA_02995 0.56 -1.2 3,151,027 + CCNA_02995 0.56 -0.1 3,151,027 + CCNA_02995 0.56 -0.3 3,151,027 + CCNA_02995 0.56 -1.5 3,151,027 + CCNA_02995 0.56 +0.7 3,151,030 - CCNA_02995 0.57 +1.1 3,151,035 - CCNA_02995 0.57 -1.9 3,151,035 - CCNA_02995 0.57 +0.3 3,151,035 - CCNA_02995 0.57 -1.5 3,151,035 - CCNA_02995 0.57 -2.2 3,151,035 - CCNA_02995 0.57 -1.8 3,151,035 - CCNA_02995 0.57 +0.7 3,151,035 - CCNA_02995 0.57 -2.6 3,151,040 - CCNA_02995 0.58 -0.7 3,151,048 + CCNA_02995 0.59 -1.6 3,151,048 + CCNA_02995 0.59 +1.0 3,151,048 + CCNA_02995 0.59 -0.6 3,151,048 + CCNA_02995 0.59 +1.3 3,151,048 + CCNA_02995 0.59 -1.5 3,151,048 + CCNA_02995 0.59 +1.4 3,151,048 + CCNA_02995 0.59 -1.2 3,151,048 + CCNA_02995 0.59 -1.6 3,151,048 + CCNA_02995 0.59 -1.1 3,151,056 - CCNA_02995 0.61 +0.9 3,151,056 - CCNA_02995 0.61 -0.5 3,151,056 - CCNA_02995 0.61 -0.2 3,151,056 - CCNA_02995 0.61 -2.0 3,151,056 - CCNA_02995 0.61 -1.7 3,151,067 - CCNA_02995 0.62 +0.1 3,151,087 + CCNA_02995 0.65 -0.3 3,151,113 + CCNA_02995 0.69 +0.1 3,151,118 - CCNA_02995 0.70 -2.3
Or see this region's nucleotide sequence