Experiment: a-Cyclodextrin (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_02518 and CCNA_02519 are separated by 5 nucleotides CCNA_02519 and CCNA_02520 overlap by 1 nucleotides CCNA_02520 and CCNA_02521 are separated by 179 nucleotides
CCNA_02518: CCNA_02518 - aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B, at 2,667,679 to 2,669,175
_02518
CCNA_02519: CCNA_02519 - aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit A, at 2,669,181 to 2,670,650
_02519
CCNA_02520: CCNA_02520 - aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit C, at 2,670,650 to 2,670,937
_02520
CCNA_02521: CCNA_02521 - endonuclease involved in recombination, at 2,671,117 to 2,671,587
_02521
Position (kb)
2669
2670
2671 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 2669.190 kb on - strand at 2669.212 kb on - strand at 2671.007 kb on - strand at 2671.030 kb on + strand at 2671.030 kb on + strand at 2671.038 kb on - strand at 2671.038 kb on - strand at 2671.038 kb on - strand at 2671.038 kb on - strand at 2671.057 kb on + strand at 2671.088 kb on + strand at 2671.088 kb on + strand at 2671.089 kb on + strand at 2671.096 kb on - strand at 2671.096 kb on - strand at 2671.096 kb on - strand at 2671.102 kb on - strand at 2671.102 kb on - strand at 2671.108 kb on - strand at 2671.588 kb on - strand at 2671.591 kb on - strand at 2671.626 kb on + strand at 2671.634 kb on - strand at 2671.634 kb on - strand at 2671.634 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction a-Cyclodextrin (C) remove 2,669,190 - +3.0 2,669,212 - +3.3 2,671,007 - +2.8 2,671,030 + -1.5 2,671,030 + -0.7 2,671,038 - -0.7 2,671,038 - -0.8 2,671,038 - -2.5 2,671,038 - +0.7 2,671,057 + +0.2 2,671,088 + -0.1 2,671,088 + -1.3 2,671,089 + -1.3 2,671,096 - -0.5 2,671,096 - +0.4 2,671,096 - -0.7 2,671,102 - +3.1 2,671,102 - +0.6 2,671,108 - -0.9 2,671,588 - +0.7 2,671,591 - -1.0 2,671,626 + -1.9 2,671,634 - +0.5 2,671,634 - -0.8 2,671,634 - -0.0
Or see this region's nucleotide sequence