Strain Fitness in Caulobacter crescentus NA1000 around CCNA_02519

Experiment: a-Cyclodextrin (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_02518 and CCNA_02519 are separated by 5 nucleotidesCCNA_02519 and CCNA_02520 overlap by 1 nucleotidesCCNA_02520 and CCNA_02521 are separated by 179 nucleotides CCNA_02518: CCNA_02518 - aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B, at 2,667,679 to 2,669,175 _02518 CCNA_02519: CCNA_02519 - aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit A, at 2,669,181 to 2,670,650 _02519 CCNA_02520: CCNA_02520 - aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit C, at 2,670,650 to 2,670,937 _02520 CCNA_02521: CCNA_02521 - endonuclease involved in recombination, at 2,671,117 to 2,671,587 _02521 Position (kb) 2669 2670 2671Strain fitness (log2 ratio) -2 -1 0 1 2 3at 2669.190 kb on - strandat 2669.212 kb on - strandat 2671.007 kb on - strandat 2671.030 kb on + strandat 2671.030 kb on + strandat 2671.038 kb on - strandat 2671.038 kb on - strandat 2671.038 kb on - strandat 2671.038 kb on - strandat 2671.057 kb on + strandat 2671.088 kb on + strandat 2671.088 kb on + strandat 2671.089 kb on + strandat 2671.096 kb on - strandat 2671.096 kb on - strandat 2671.096 kb on - strandat 2671.102 kb on - strandat 2671.102 kb on - strandat 2671.108 kb on - strandat 2671.588 kb on - strandat 2671.591 kb on - strandat 2671.626 kb on + strandat 2671.634 kb on - strandat 2671.634 kb on - strandat 2671.634 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction a-Cyclodextrin (C)
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2,669,190 - +3.0
2,669,212 - +3.3
2,671,007 - +2.8
2,671,030 + -1.5
2,671,030 + -0.7
2,671,038 - -0.7
2,671,038 - -0.8
2,671,038 - -2.5
2,671,038 - +0.7
2,671,057 + +0.2
2,671,088 + -0.1
2,671,088 + -1.3
2,671,089 + -1.3
2,671,096 - -0.5
2,671,096 - +0.4
2,671,096 - -0.7
2,671,102 - +3.1
2,671,102 - +0.6
2,671,108 - -0.9
2,671,588 - +0.7
2,671,591 - -1.0
2,671,626 + -1.9
2,671,634 - +0.5
2,671,634 - -0.8
2,671,634 - -0.0

Or see this region's nucleotide sequence