Strain Fitness in Caulobacter crescentus NA1000 around CCNA_01528

Experiment: a-Cyclodextrin (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	a-Cyclodextrin (C)
1,635,386	+		CCNA_01527	0.15	+3.1
1,635,386	+		CCNA_01527	0.15	+2.2
1,635,430	-		CCNA_01527	0.21	-1.0
1,635,438	+		CCNA_01527	0.22	+0.9
1,635,440	+		CCNA_01527	0.22	+1.5
1,635,446	-		CCNA_01527	0.23	-0.6
1,635,448	-		CCNA_01527	0.23	-0.6
1,635,456	-		CCNA_01527	0.24	-0.8
1,635,457	+		CCNA_01527	0.24	+1.6
1,635,460	+		CCNA_01527	0.24	+0.6
1,635,499	+		CCNA_01527	0.29	+1.8
1,635,499	+		CCNA_01527	0.29	+1.1
1,635,499	+		CCNA_01527	0.29	+1.9
1,635,514	+		CCNA_01527	0.31	+2.1
1,635,541	-		CCNA_01527	0.34	-1.1
1,635,545	+		CCNA_01527	0.35	+1.9
1,635,567	+		CCNA_01527	0.37	+2.7
1,635,584	+		CCNA_01527	0.39	+2.4
1,635,593	+		CCNA_01527	0.40	+2.9
1,635,611	-		CCNA_01527	0.43	+1.7
1,635,626	+		CCNA_01527	0.44	+2.8
1,635,634	-		CCNA_01527	0.45	+1.4
1,635,660	+		CCNA_01527	0.49	+2.4
1,635,661	-		CCNA_01527	0.49	-3.2
1,635,661	-		CCNA_01527	0.49	-0.3
1,635,693	-		CCNA_01527	0.53	+0.3
1,635,733	-		CCNA_01527	0.57	-0.2
1,635,738	+		CCNA_01527	0.58	+2.5
1,635,738	+		CCNA_01527	0.58	+2.6
1,635,738	+		CCNA_01527	0.58	+3.2
1,635,738	+		CCNA_01527	0.58	+2.2
1,635,738	+		CCNA_01527	0.58	+2.3
1,635,738	+		CCNA_01527	0.58	+2.0
1,635,738	+		CCNA_01527	0.58	+2.4
1,635,746	-		CCNA_01527	0.59	+0.6
1,635,746	-		CCNA_01527	0.59	-0.4
1,635,746	-		CCNA_01527	0.59	+0.4
1,635,746	-		CCNA_01527	0.59	+0.6
1,635,747	-		CCNA_01527	0.59	+0.1
1,635,785	-		CCNA_01527	0.64	+0.6
1,635,806	-		CCNA_01527	0.66	-0.2
1,635,857	+		CCNA_01527	0.73	+1.7
1,635,897	+		CCNA_01527	0.77	+2.6
1,635,897	+		CCNA_01527	0.77	+2.6
1,635,898	-		CCNA_01527	0.77	+0.3
1,635,905	-		CCNA_01527	0.78	-1.8
1,635,905	-		CCNA_01527	0.78	-0.6
1,635,905	-		CCNA_01527	0.78	-1.7
1,635,916	+		CCNA_01527	0.80	+3.4
1,635,918	+		CCNA_01527	0.80	+2.6
1,635,918	+		CCNA_01527	0.80	+1.2
1,635,926	-		CCNA_01527	0.81	-1.7
1,635,926	-		CCNA_01527	0.81	-1.1
1,635,926	-		CCNA_01527	0.81	-0.5
1,635,936	-		CCNA_01527	0.82	+0.3
1,635,936	-		CCNA_01527	0.82	+0.2
1,635,958	+		CCNA_01527	0.85	+2.0
1,635,958	+		CCNA_01527	0.85	+2.5
1,635,986	+		CCNA_01527	0.88	+2.5
1,635,994	-		CCNA_01527	0.89	-0.4
1,636,000	+				+2.3
1,636,004	-				+0.6
1,636,013	+				+2.4
1,636,029	+				+2.2
1,636,070	+				+2.0
1,636,070	+				+1.2
1,636,076	-				+1.0
1,636,078	-				-1.1
1,636,078	-				-0.6
1,636,078	-				-2.2
1,636,078	-				-0.2
1,636,083	+				+1.7
1,636,085	-				-0.5
1,636,085	-				-2.0
1,636,093	-				-1.5
1,636,103	+				+1.4
1,636,103	+				+0.5
1,636,103	+				+1.7
1,636,111	-				-0.3
1,636,111	-				-1.9
1,636,111	-				+3.3
1,636,132	-				+0.6
1,636,169	+				-0.1
1,636,170	+				+0.1
1,636,207	+				-1.0
1,636,251	+				-0.7
1,636,259	-				-2.0
1,636,259	-				-0.3
1,636,259	-				+0.8
1,636,270	-				-2.6
1,636,270	-				-1.3
1,636,337	+				+2.7
1,636,341	+				+3.6
1,636,346	+				+3.2
1,636,362	+				+3.0
1,636,362	+				+1.1
1,636,454	+		CCNA_01528	0.12	+2.2
1,636,454	+		CCNA_01528	0.12	+1.5
1,636,454	+		CCNA_01528	0.12	+2.8
1,636,464	+		CCNA_01528	0.13	+1.1
1,636,464	+		CCNA_01528	0.13	+3.0
1,636,487	+		CCNA_01528	0.16	+2.9
1,636,495	-		CCNA_01528	0.17	-2.1
1,636,680	+		CCNA_01528	0.39	+3.7
1,636,680	+		CCNA_01528	0.39	+2.7
1,636,692	+		CCNA_01528	0.41	+2.0
1,636,704	+		CCNA_01528	0.42	+2.9
1,636,736	-		CCNA_01528	0.46	-1.6
1,636,762	-		CCNA_01528	0.49	-1.1
1,636,762	-		CCNA_01528	0.49	-1.3
1,636,769	-		CCNA_01528	0.50	-2.3
1,636,791	+		CCNA_01528	0.53	+3.2
1,636,791	+		CCNA_01528	0.53	+3.5
1,636,810	+		CCNA_01528	0.55	+2.0
1,636,833	+		CCNA_01528	0.58	+2.5
1,636,839	+		CCNA_01528	0.58	+1.8
1,636,841	-		CCNA_01528	0.59	-2.1
1,636,846	-		CCNA_01528	0.59	-1.0
1,636,871	+		CCNA_01528	0.62	+3.4
1,636,874	-		CCNA_01528	0.63	-1.1
1,636,878	+		CCNA_01528	0.63	+2.9
1,636,879	+		CCNA_01528	0.63	+4.8
1,636,943	-		CCNA_01528	0.71	-2.2
1,636,994	-		CCNA_01528	0.77	-0.9
1,636,998	+		CCNA_01528	0.78	+3.3
1,636,998	+		CCNA_01528	0.78	+3.3
1,636,998	+		CCNA_01528	0.78	+3.3
1,636,998	+		CCNA_01528	0.78	+3.5
1,636,998	+		CCNA_01528	0.78	+2.9
1,636,998	+		CCNA_01528	0.78	+3.1
1,637,006	-		CCNA_01528	0.79	+0.7
1,637,006	-		CCNA_01528	0.79	-0.8
1,637,019	+		CCNA_01528	0.80	+3.3
1,637,019	+		CCNA_01528	0.80	+2.8
1,637,019	+		CCNA_01528	0.80	+3.1
1,637,027	-		CCNA_01528	0.81	+0.1
1,637,027	-		CCNA_01528	0.81	-1.5
1,637,029	+		CCNA_01528	0.82	+2.6
1,637,040	+		CCNA_01528	0.83	+3.1
1,637,048	-		CCNA_01528	0.84	+0.7
1,637,052	-		CCNA_01528	0.84	-0.6
1,637,083	-		CCNA_01528	0.88	-1.1
1,637,101	+				+2.6
1,637,171	+				+3.5
1,637,200	+				+1.8
1,637,222	+				+1.3
1,637,235	+				+3.4
1,637,298	+				+1.3
1,637,298	+				+2.2
1,637,321	+				+1.1
1,637,365	-		CCNA_01529	0.20	+1.2
1,637,365	-		CCNA_01529	0.20	-1.4
1,637,365	-		CCNA_01529	0.20	+0.8
1,637,374	+		CCNA_01529	0.22	+2.1
1,637,410	+		CCNA_01529	0.32	+1.1
1,637,427	+		CCNA_01529	0.36	+0.9
1,637,427	+		CCNA_01529	0.36	+1.6
1,637,435	-		CCNA_01529	0.38	-0.3
1,637,435	-		CCNA_01529	0.38	+0.7
1,637,458	+		CCNA_01529	0.45	+1.2
1,637,480	+		CCNA_01529	0.51	+1.7
1,637,480	+		CCNA_01529	0.51	+0.9
1,637,488	-		CCNA_01529	0.53	+0.4
1,637,539	+		CCNA_01529	0.67	+1.1
1,637,539	+		CCNA_01529	0.67	+1.6
1,637,541	+		CCNA_01529	0.67	+3.8
1,637,541	+		CCNA_01529	0.67	+2.3
1,637,541	+		CCNA_01529	0.67	+1.9
1,637,547	-		CCNA_01529	0.69	-0.6
1,637,581	-		CCNA_01529	0.78	-1.9
1,637,618	+		CCNA_01529	0.88	+2.3
1,637,623	+				+0.9
1,637,623	+		CCNA_01529	0.89	+1.6
1,637,623	+		CCNA_01529	0.89	+2.2
1,637,631	-				+0.8
1,637,655	+				+0.7
1,637,656	+				+2.3
1,637,656	+				+3.9
1,637,656	+				+2.0
1,637,656	+				+4.5
1,637,656	+				+1.7
1,637,664	-				-0.7
1,637,664	-				-1.3
1,637,664	-				-0.1
1,637,696	-				+0.1
1,637,724	-				-0.8
1,637,732	+				+2.3
1,637,745	-				+2.4
1,637,827	+				+2.0
1,637,885	+				+2.1
1,637,922	+				+1.3
1,637,922	+				+2.7
1,637,931	-		CCNA_01530	0.11	-1.3
1,637,943	+		CCNA_01530	0.12	+0.3
1,637,961	+		CCNA_01530	0.14	+2.3
1,637,961	+		CCNA_01530	0.14	+2.6
1,637,969	-		CCNA_01530	0.15	+0.5
1,637,969	-		CCNA_01530	0.15	-2.3
1,637,974	-		CCNA_01530	0.16	-1.8
1,638,000	-		CCNA_01530	0.19	-1.6
1,638,026	-		CCNA_01530	0.22	-0.8
1,638,028	+		CCNA_01530	0.22	+2.9
1,638,038	-		CCNA_01530	0.24	-0.9
1,638,038	-		CCNA_01530	0.24	+1.7
1,638,066	+		CCNA_01530	0.27	+1.5
1,638,092	-		CCNA_01530	0.30	-0.7
1,638,103	+		CCNA_01530	0.31	+1.9
1,638,111	-		CCNA_01530	0.32	-1.7
1,638,140	+		CCNA_01530	0.36	+1.7
1,638,152	+		CCNA_01530	0.37	+1.8
1,638,152	+		CCNA_01530	0.37	+0.7
1,638,152	+		CCNA_01530	0.37	+0.9
1,638,152	+		CCNA_01530	0.37	+2.1
1,638,164	+		CCNA_01530	0.39	+2.4
1,638,170	+		CCNA_01530	0.39	+2.2