Strain Fitness in Caulobacter crescentus NA1000 around CCNA_01347

Experiment: a-Cyclodextrin (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	a-Cyclodextrin (C)
1,459,367	+		CCNA_01345	0.79	+0.9
1,459,445	-		CCNA_01345	0.89	+0.3
1,459,481	+				+0.3
1,459,486	+				-1.7
1,459,491	+				-1.8
1,459,581	+				+1.4
1,459,593	+				+0.2
1,459,593	+				-0.2
1,459,626	-				-0.5
1,459,635	-				-0.9
1,459,671	-				-1.8
1,459,683	+				+1.5
1,459,689	-				-1.4
1,459,696	-				+0.5
1,459,703	+				+1.7
1,459,753	+				-0.2
1,459,789	+		CCNA_01346	0.11	+1.2
1,459,810	+		CCNA_01346	0.14	+0.5
1,459,857	+		CCNA_01346	0.21	-0.7
1,459,857	+		CCNA_01346	0.21	-0.7
1,459,902	+		CCNA_01346	0.28	-1.3
1,459,918	+		CCNA_01346	0.30	+0.3
1,459,982	-		CCNA_01346	0.39	-0.3
1,459,996	+		CCNA_01346	0.41	-1.0
1,460,001	+		CCNA_01346	0.42	-1.8
1,460,004	-		CCNA_01346	0.43	-0.4
1,460,034	-		CCNA_01346	0.47	-1.4
1,460,068	+		CCNA_01346	0.52	-0.6
1,460,074	-		CCNA_01346	0.53	-2.2
1,460,096	+		CCNA_01346	0.56	-0.4
1,460,103	+		CCNA_01346	0.57	+0.9
1,460,104	-		CCNA_01346	0.57	-2.0
1,460,106	-		CCNA_01346	0.58	-1.5
1,460,111	-		CCNA_01346	0.58	-0.8
1,460,186	+		CCNA_01346	0.69	+1.6
1,460,186	+		CCNA_01346	0.69	-2.2
1,460,186	+		CCNA_01346	0.69	+0.9
1,460,194	-		CCNA_01346	0.70	+3.0
1,460,194	-		CCNA_01346	0.70	+2.7
1,460,194	-		CCNA_01346	0.70	+1.7
1,460,196	+		CCNA_01346	0.71	-1.7
1,460,236	-		CCNA_01346	0.77	+0.2
1,460,237	-		CCNA_01346	0.77	-1.0
1,460,275	-		CCNA_01346	0.82	+3.1
1,460,275	-		CCNA_01346	0.82	+2.6
1,460,307	+		CCNA_01346	0.87	+1.8
1,460,307	+		CCNA_01346	0.87	+1.8
1,460,310	-		CCNA_01346	0.88	-1.5
1,460,310	-		CCNA_01346	0.88	-1.0
1,460,315	-		CCNA_01346	0.88	-0.8
1,460,315	-		CCNA_01346	0.88	+1.8
1,460,348	+				+2.8
1,460,348	+				+2.4
1,460,364	+				+2.8
1,460,380	+				+4.2
1,460,441	+		CCNA_01347	0.11	+2.3
1,460,450	+		CCNA_01347	0.13	+3.3
1,460,458	-		CCNA_01347	0.14	+1.1
1,460,528	+		CCNA_01347	0.23	+2.3
1,460,549	+		CCNA_01347	0.26	+3.3
1,460,557	-		CCNA_01347	0.27	-0.1
1,460,596	-		CCNA_01347	0.33	+1.0
1,460,597	-		CCNA_01347	0.33	+1.0
1,460,617	+		CCNA_01347	0.36	-0.4
1,460,658	+		CCNA_01347	0.41	+1.7
1,460,663	+		CCNA_01347	0.42	+2.5
1,460,666	-		CCNA_01347	0.42	+0.6
1,460,684	-				+1.0
1,460,684	-		CCNA_01347	0.45	+0.8
1,460,684	-		CCNA_01347	0.45	+0.2
1,460,703	-		CCNA_01347	0.48	+0.8
1,460,753	-		CCNA_01347	0.54	+0.2
1,460,786	+		CCNA_01347	0.59	+2.5
1,460,786	+		CCNA_01347	0.59	+1.6
1,460,786	+		CCNA_01347	0.59	+2.5
1,460,786	+		CCNA_01347	0.59	+1.6
1,460,794	-		CCNA_01347	0.60	+0.1
1,460,804	+		CCNA_01347	0.61	+2.0
1,460,812	-		CCNA_01347	0.63	-1.7
1,460,884	-		CCNA_01347	0.72	+1.1
1,460,914	+		CCNA_01347	0.77	+2.5
1,460,975	+		CCNA_01347	0.85	+1.6
1,460,975	+		CCNA_01347	0.85	+1.5
1,460,981	-		CCNA_01347	0.86	-1.0
1,461,095	+				+2.6
1,461,095	+				+2.9
1,461,103	-				-0.1
1,461,107	+				+2.6
1,461,113	-				-3.1
1,461,222	+				+2.0
1,461,222	+				+3.0
1,461,227	+				+2.7
1,461,227	+				+1.7
1,461,230	-				-1.0
1,461,240	-				-0.3
1,461,240	-				+0.0
1,461,261	+				+1.6
1,461,269	-				+1.0
1,461,269	-				-1.2
1,461,271	+				+1.3
1,461,271	+				+1.7
1,461,279	-				+0.7
1,461,289	-				-1.2
1,461,308	+				-0.8
1,461,324	+				+0.8
1,461,359	+				+0.1
1,461,359	+				-0.7
1,461,359	+				+2.0
1,461,359	+				-0.1
1,461,372	+				+1.9
1,461,390	+				-1.7
1,461,409	+				+1.9
1,461,409	+				-1.5
1,461,417	-				+1.0
1,461,417	-				+0.4
1,461,417	-				+1.6
1,461,417	-				+2.2
1,461,456	+				+1.0
1,461,464	-				+2.9
1,461,464	-				+0.2
1,461,549	+		CCNA_01348	0.14	+0.7
1,461,557	-		CCNA_01348	0.15	+0.0
1,461,574	-		CCNA_01348	0.18	-1.2
1,461,574	-		CCNA_01348	0.18	-1.0
1,461,596	+		CCNA_01348	0.22	+1.2
1,461,596	-		CCNA_01348	0.22	-1.0
1,461,604	-		CCNA_01348	0.24	-0.2
1,461,609	+		CCNA_01348	0.24	-0.5
1,461,614	+		CCNA_01348	0.25	+1.0
1,461,656	+		CCNA_01348	0.33	-0.3
1,461,658	-		CCNA_01348	0.33	+2.0
1,461,664	-		CCNA_01348	0.34	-2.9
1,461,665	-		CCNA_01348	0.34	+1.5
1,461,668	+		CCNA_01348	0.35	-2.3
1,461,668	+		CCNA_01348	0.35	-1.0
1,461,668	+		CCNA_01348	0.35	-1.0
1,461,668	+		CCNA_01348	0.35	+0.0
1,461,668	+		CCNA_01348	0.35	-0.4
1,461,668	+		CCNA_01348	0.35	+0.6
1,461,676	-		CCNA_01348	0.36	+1.5
1,461,676	-		CCNA_01348	0.36	-1.3
1,461,676	-		CCNA_01348	0.36	+0.5
1,461,676	-		CCNA_01348	0.36	+0.5
1,461,681	-		CCNA_01348	0.37	+2.9
1,461,681	-		CCNA_01348	0.37	+2.5
1,461,702	+		CCNA_01348	0.41	-1.3
1,461,719	+		CCNA_01348	0.44	-1.5
1,461,729	+		CCNA_01348	0.46	-0.1
1,461,732	-		CCNA_01348	0.46	+0.8
1,461,734	+		CCNA_01348	0.47	-0.3
1,461,737	-		CCNA_01348	0.47	+1.5
1,461,737	-		CCNA_01348	0.47	-1.2
1,461,737	-		CCNA_01348	0.47	-1.8
1,461,744	+		CCNA_01348	0.48	-2.3
1,461,779	+		CCNA_01348	0.55	-3.0
1,461,801	-		CCNA_01348	0.59	+0.9
1,461,806	-		CCNA_01348	0.59	-0.6
1,461,816	+		CCNA_01348	0.61	+1.5
1,461,839	-		CCNA_01348	0.65	-1.0
1,461,839	-		CCNA_01348	0.65	-0.3
1,461,956	-		CCNA_01348	0.86	+0.3
1,461,961	-		CCNA_01348	0.87	+4.3
1,461,961	-		CCNA_01348	0.87	+0.9
1,461,997	-				+3.5
1,462,001	+				+0.0
1,462,007	-				+0.1
1,462,016	+				-1.9
1,462,016	+				-1.9
1,462,016	+				+0.7
1,462,016	+				-0.0
1,462,016	+				-0.7
1,462,024	-				-1.2
1,462,024	-				-0.3
1,462,024	-				-1.5
1,462,024	-				-0.4
1,462,024	-				-0.2
1,462,046	-				-1.9
1,462,048	+				+1.0
1,462,057	+				+1.0
1,462,061	+				+1.6
1,462,069	-				+2.5
1,462,069	-				+0.8
1,462,069	-				-1.1
1,462,069	-				-0.4