Strain Fitness in Caulobacter crescentus NA1000 around CCNA_01302

Experiment: a-Cyclodextrin (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	a-Cyclodextrin (C)
1,427,808	+		CCNA_01301	0.59	+1.0
1,427,813	+		CCNA_01301	0.59	+2.4
1,427,813	+		CCNA_01301	0.59	-0.5
1,427,813	+		CCNA_01301	0.59	+1.6
1,427,813	+		CCNA_01301	0.59	+3.0
1,427,813	+		CCNA_01301	0.59	+2.5
1,427,813	+		CCNA_01301	0.59	+1.4
1,427,813	+		CCNA_01301	0.59	+0.8
1,427,816	-		CCNA_01301	0.59	+0.5
1,427,816	-		CCNA_01301	0.59	+0.9
1,427,816	-		CCNA_01301	0.59	-1.2
1,427,820	+		CCNA_01301	0.60	+0.4
1,427,821	-		CCNA_01301	0.60	+0.4
1,427,826	-		CCNA_01301	0.60	-1.6
1,427,841	+		CCNA_01301	0.60	+0.9
1,427,915	+		CCNA_01301	0.64	+2.7
1,427,931	-		CCNA_01301	0.64	-0.4
1,427,998	-		CCNA_01301	0.67	+1.1
1,428,020	-		CCNA_01301	0.68	+1.4
1,428,022	+		CCNA_01301	0.68	+1.2
1,428,031	-		CCNA_01301	0.69	+0.0
1,428,054	+		CCNA_01301	0.70	+1.4
1,428,070	+		CCNA_01301	0.70	+2.0
1,428,070	+		CCNA_01301	0.70	+1.8
1,428,070	+		CCNA_01301	0.70	+1.8
1,428,078	-				+1.7
1,428,078	-		CCNA_01301	0.71	-1.2
1,428,128	+		CCNA_01301	0.73	+0.6
1,428,138	+		CCNA_01301	0.73	+1.5
1,428,138	+		CCNA_01301	0.73	-0.2
1,428,138	+		CCNA_01301	0.73	+2.5
1,428,146	-		CCNA_01301	0.74	+1.5
1,428,156	+		CCNA_01301	0.74	-0.2
1,428,171	+		CCNA_01301	0.75	+0.4
1,428,206	+		CCNA_01301	0.76	+1.5
1,428,222	+		CCNA_01301	0.77	+0.3
1,428,252	+		CCNA_01301	0.78	+0.7
1,428,331	-		CCNA_01301	0.82	-0.8
1,428,381	-		CCNA_01301	0.84	-0.4
1,428,389	+		CCNA_01301	0.84	+2.1
1,428,389	+		CCNA_01301	0.84	+0.7
1,428,389	+		CCNA_01301	0.84	-0.2
1,428,399	-		CCNA_01301	0.85	-2.7
1,428,404	-		CCNA_01301	0.85	+3.3
1,428,406	+		CCNA_01301	0.85	-0.1
1,428,406	+		CCNA_01301	0.85	+3.0
1,428,416	+		CCNA_01301	0.86	+1.0
1,428,416	+		CCNA_01301	0.86	+3.5
1,428,416	+		CCNA_01301	0.86	-0.3
1,428,424	-		CCNA_01301	0.86	-0.4
1,428,448	-		CCNA_01301	0.87	-1.9
1,428,485	+		CCNA_01301	0.89	-0.7
1,428,488	-		CCNA_01301	0.89	-0.9
1,428,493	-		CCNA_01301	0.89	-1.6
1,428,583	+				-0.2
1,428,637	-				+0.4
1,428,667	+				+3.0
1,428,703	-				-0.7
1,428,743	-				-0.2
1,428,762	+				+0.3
1,428,768	+				+1.0
1,428,770	-				+0.7
1,428,785	+				+0.4
1,428,789	-				-0.8
1,428,819	+				+0.4
1,428,842	+				+0.9
1,428,885	+				-0.9
1,428,888	-				+1.1
1,428,896	+				-1.2
1,428,896	+				+0.8
1,428,904	-				-0.1
1,429,120	-		CCNA_01302	0.28	-2.4
1,429,158	-		CCNA_01302	0.31	-2.0
1,429,264	+		CCNA_01302	0.40	-0.3
1,429,287	+		CCNA_01302	0.42	+0.9
1,429,299	+		CCNA_01302	0.43	+0.7
1,429,299	+		CCNA_01302	0.43	+0.1
1,429,307	+		CCNA_01302	0.44	-0.3
1,429,315	-		CCNA_01302	0.45	-1.8
1,429,315	-		CCNA_01302	0.45	-1.2
1,429,391	+		CCNA_01302	0.51	+0.4
1,429,440	-		CCNA_01302	0.56	-1.3
1,429,447	-		CCNA_01302	0.56	-0.7
1,429,458	-		CCNA_01302	0.57	-0.6
1,429,481	+		CCNA_01302	0.59	+1.1
1,429,493	+		CCNA_01302	0.60	+0.7
1,429,497	+		CCNA_01302	0.61	+1.4
1,429,498	+		CCNA_01302	0.61	+0.4
1,429,518	+		CCNA_01302	0.62	-0.2
1,429,542	+		CCNA_01302	0.65	+0.8
1,429,612	+		CCNA_01302	0.71	+0.2
1,429,617	+		CCNA_01302	0.71	+1.4
1,429,620	-		CCNA_01302	0.71	+2.0
1,429,626	-		CCNA_01302	0.72	-0.5
1,429,635	+		CCNA_01302	0.73	+0.5
1,429,640	+		CCNA_01302	0.73	+0.7
1,429,648	-		CCNA_01302	0.74	-0.8
1,429,648	-		CCNA_01302	0.74	-1.6
1,429,648	-		CCNA_01302	0.74	-0.8
1,429,678	+		CCNA_01302	0.76	+0.3
1,429,686	-		CCNA_01302	0.77	-0.8
1,429,720	-		CCNA_01302	0.80	-2.4
1,429,745	+		CCNA_01302	0.82	+2.0
1,429,818	+		CCNA_01302	0.89	+0.8
1,429,826	-		CCNA_01302	0.89	-0.6
1,429,826	-		CCNA_01302	0.89	-0.2
1,429,838	+				+0.9
1,429,845	-				+3.2
1,429,847	+				+0.8
1,429,889	-				+0.6
1,429,901	-				-1.4
1,429,912	-				+0.7
1,429,938	+				-0.5
1,429,947	+				+2.1
1,429,950	-				+0.8
1,429,950	-				+0.0
1,429,952	+				-0.5
1,429,955	-				-1.6
1,429,956	-				+0.1
1,430,006	+				+0.6
1,430,052	-				-0.2
1,430,085	+				-0.7
1,430,085	+				+1.7
1,430,093	-				-0.6
1,430,093	-				-0.6
1,430,093	-				+1.1
1,430,183	+		CCNA_01303	0.15	+1.4
1,430,183	+		CCNA_01303	0.15	+0.1
1,430,192	+		CCNA_01303	0.16	+1.8
1,430,193	-		CCNA_01303	0.16	+0.5
1,430,223	+		CCNA_01303	0.19	+0.4
1,430,276	+		CCNA_01303	0.26	+3.3
1,430,283	-		CCNA_01303	0.26	+0.1
1,430,316	+		CCNA_01303	0.30	+2.1
1,430,324	-		CCNA_01303	0.31	+0.4
1,430,329	-		CCNA_01303	0.32	+2.5
1,430,344	-		CCNA_01303	0.34	-0.6
1,430,349	-		CCNA_01303	0.34	-0.3
1,430,452	+		CCNA_01303	0.47	+2.1
1,430,457	+		CCNA_01303	0.47	+1.3
1,430,500	-		CCNA_01303	0.52	+1.2
1,430,506	-		CCNA_01303	0.53	+0.7
1,430,506	-		CCNA_01303	0.53	+0.9
1,430,529	+		CCNA_01303	0.56	+1.0
1,430,595	+		CCNA_01303	0.64	+1.1
1,430,635	-		CCNA_01303	0.68	-0.2
1,430,654	-		CCNA_01303	0.71	-1.5
1,430,708	+		CCNA_01303	0.77	+1.7
1,430,716	-		CCNA_01303	0.78	-0.5
1,430,716	-		CCNA_01303	0.78	-0.2
1,430,716	-		CCNA_01303	0.78	-2.5
1,430,747	-		CCNA_01303	0.82	+1.4
1,430,789	-		CCNA_01303	0.87	+0.0
1,430,825	+				+2.7
1,430,864	+				+2.5
1,430,885	-				-1.5
1,430,890	+				+0.4
1,430,900	+				+2.0
1,430,931	+				+2.1
1,430,939	-				+0.7