Strain Fitness in Caulobacter crescentus NA1000 around CCNA_01153

Experiment: a-Cyclodextrin (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_01151 and CCNA_01152 are separated by 10 nucleotidesCCNA_01152 and CCNA_01153 are separated by 1 nucleotidesCCNA_01153 and CCNA_01154 are separated by 84 nucleotides CCNA_01151: CCNA_01151 - DeoR-family transcriptional regulator, at 1,254,720 to 1,255,703 _01151 CCNA_01152: CCNA_01152 - external DNA uptake/catabolism protein, at 1,255,714 to 1,256,535 _01152 CCNA_01153: CCNA_01153 - chromate transport protein, at 1,256,537 to 1,257,817 _01153 CCNA_01154: CCNA_01154 - hypothetical protein, at 1,257,902 to 1,258,591 _01154 Position (kb) 1256 1257 1258Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 1255.539 kb on - strand, within CCNA_01151at 1255.589 kb on + strand, within CCNA_01151at 1255.591 kb on + strand, within CCNA_01151at 1255.618 kb on - strandat 1255.641 kb on - strandat 1255.643 kb on - strandat 1255.659 kb on + strandat 1255.659 kb on + strandat 1255.659 kb on + strandat 1255.659 kb on + strandat 1255.666 kb on - strandat 1255.670 kb on + strandat 1255.670 kb on + strandat 1255.710 kb on + strandat 1255.713 kb on - strandat 1255.785 kb on + strandat 1255.785 kb on + strandat 1255.785 kb on + strandat 1255.785 kb on + strandat 1255.797 kb on + strand, within CCNA_01152at 1255.810 kb on - strand, within CCNA_01152at 1255.850 kb on + strand, within CCNA_01152at 1255.888 kb on - strand, within CCNA_01152at 1255.908 kb on - strand, within CCNA_01152at 1255.941 kb on + strand, within CCNA_01152at 1255.947 kb on - strand, within CCNA_01152at 1255.949 kb on - strand, within CCNA_01152at 1255.949 kb on - strand, within CCNA_01152at 1255.961 kb on + strand, within CCNA_01152at 1255.971 kb on + strand, within CCNA_01152at 1255.971 kb on + strand, within CCNA_01152at 1255.979 kb on - strand, within CCNA_01152at 1255.995 kb on + strand, within CCNA_01152at 1256.003 kb on - strand, within CCNA_01152at 1256.009 kb on + strand, within CCNA_01152at 1256.009 kb on + strand, within CCNA_01152at 1256.034 kb on + strand, within CCNA_01152at 1256.034 kb on + strand, within CCNA_01152at 1256.046 kb on + strand, within CCNA_01152at 1256.057 kb on + strand, within CCNA_01152at 1256.091 kb on + strand, within CCNA_01152at 1256.107 kb on - strand, within CCNA_01152at 1256.111 kb on + strand, within CCNA_01152at 1256.155 kb on + strand, within CCNA_01152at 1256.191 kb on - strand, within CCNA_01152at 1256.222 kb on + strand, within CCNA_01152at 1256.239 kb on + strand, within CCNA_01152at 1256.254 kb on + strand, within CCNA_01152at 1256.254 kb on + strand, within CCNA_01152at 1256.262 kb on - strand, within CCNA_01152at 1256.262 kb on - strand, within CCNA_01152at 1256.262 kb on - strand, within CCNA_01152at 1256.281 kb on - strand, within CCNA_01152at 1256.286 kb on - strand, within CCNA_01152at 1256.315 kb on + strand, within CCNA_01152at 1256.323 kb on - strand, within CCNA_01152at 1256.337 kb on + strand, within CCNA_01152at 1256.457 kb on - strandat 1256.520 kb on + strandat 1256.534 kb on + strandat 1256.560 kb on + strandat 1256.580 kb on + strandat 1256.602 kb on - strandat 1256.602 kb on - strandat 1256.627 kb on + strandat 1256.637 kb on + strandat 1256.645 kb on - strandat 1256.645 kb on - strandat 1256.678 kb on + strand, within CCNA_01153at 1256.686 kb on - strand, within CCNA_01153at 1256.690 kb on + strand, within CCNA_01153at 1256.713 kb on + strand, within CCNA_01153at 1256.753 kb on - strand, within CCNA_01153at 1256.767 kb on + strand, within CCNA_01153at 1256.770 kb on - strand, within CCNA_01153at 1256.789 kb on + strand, within CCNA_01153at 1256.806 kb on + strand, within CCNA_01153at 1256.825 kb on - strand, within CCNA_01153at 1256.832 kb on + strand, within CCNA_01153at 1256.864 kb on + strand, within CCNA_01153at 1256.869 kb on + strand, within CCNA_01153at 1256.872 kb on - strand, within CCNA_01153at 1256.876 kb on - strand, within CCNA_01153at 1256.878 kb on + strand, within CCNA_01153at 1256.937 kb on - strand, within CCNA_01153at 1256.948 kb on - strand, within CCNA_01153at 1257.004 kb on + strand, within CCNA_01153at 1257.044 kb on + strand, within CCNA_01153at 1257.044 kb on + strand, within CCNA_01153at 1257.061 kb on - strand, within CCNA_01153at 1257.090 kb on + strand, within CCNA_01153at 1257.103 kb on + strand, within CCNA_01153at 1257.103 kb on + strand, within CCNA_01153at 1257.103 kb on + strand, within CCNA_01153at 1257.111 kb on - strand, within CCNA_01153at 1257.111 kb on - strand, within CCNA_01153at 1257.128 kb on + strand, within CCNA_01153at 1257.128 kb on + strand, within CCNA_01153at 1257.128 kb on + strand, within CCNA_01153at 1257.128 kb on + strand, within CCNA_01153at 1257.128 kb on + strand, within CCNA_01153at 1257.128 kb on + strand, within CCNA_01153at 1257.128 kb on + strand, within CCNA_01153at 1257.128 kb on + strand, within CCNA_01153at 1257.128 kb on + strand, within CCNA_01153at 1257.128 kb on + strand, within CCNA_01153at 1257.136 kb on - strand, within CCNA_01153at 1257.136 kb on - strand, within CCNA_01153at 1257.136 kb on - strand, within CCNA_01153at 1257.136 kb on - strand, within CCNA_01153at 1257.150 kb on + strand, within CCNA_01153at 1257.158 kb on - strand, within CCNA_01153at 1257.164 kb on + strand, within CCNA_01153at 1257.169 kb on + strand, within CCNA_01153at 1257.169 kb on + strand, within CCNA_01153at 1257.194 kb on + strand, within CCNA_01153at 1257.194 kb on + strand, within CCNA_01153at 1257.194 kb on + strand, within CCNA_01153at 1257.194 kb on + strand, within CCNA_01153at 1257.194 kb on + strand, within CCNA_01153at 1257.209 kb on + strand, within CCNA_01153at 1257.209 kb on + strand, within CCNA_01153at 1257.209 kb on + strand, within CCNA_01153at 1257.217 kb on - strand, within CCNA_01153at 1257.235 kb on + strand, within CCNA_01153at 1257.265 kb on + strand, within CCNA_01153at 1257.265 kb on + strand, within CCNA_01153at 1257.273 kb on - strand, within CCNA_01153at 1257.278 kb on - strand, within CCNA_01153at 1257.291 kb on + strand, within CCNA_01153at 1257.298 kb on - strand, within CCNA_01153at 1257.310 kb on - strand, within CCNA_01153at 1257.322 kb on + strand, within CCNA_01153at 1257.327 kb on + strand, within CCNA_01153at 1257.327 kb on + strand, within CCNA_01153at 1257.327 kb on + strand, within CCNA_01153at 1257.327 kb on + strand, within CCNA_01153at 1257.327 kb on + strand, within CCNA_01153at 1257.327 kb on + strand, within CCNA_01153at 1257.327 kb on + strand, within CCNA_01153at 1257.327 kb on + strand, within CCNA_01153at 1257.327 kb on + strand, within CCNA_01153at 1257.335 kb on - strand, within CCNA_01153at 1257.335 kb on - strand, within CCNA_01153at 1257.335 kb on - strand, within CCNA_01153at 1257.335 kb on - strand, within CCNA_01153at 1257.335 kb on - strand, within CCNA_01153at 1257.335 kb on - strand, within CCNA_01153at 1257.337 kb on + strand, within CCNA_01153at 1257.397 kb on + strand, within CCNA_01153at 1257.397 kb on + strand, within CCNA_01153at 1257.431 kb on - strand, within CCNA_01153at 1257.493 kb on - strand, within CCNA_01153at 1257.532 kb on + strand, within CCNA_01153at 1257.545 kb on - strand, within CCNA_01153at 1257.553 kb on + strand, within CCNA_01153at 1257.604 kb on - strand, within CCNA_01153at 1257.620 kb on + strand, within CCNA_01153at 1257.699 kb on + strandat 1257.725 kb on + strandat 1257.732 kb on + strandat 1257.733 kb on - strandat 1257.737 kb on + strandat 1257.740 kb on - strandat 1257.747 kb on + strandat 1257.755 kb on + strandat 1257.755 kb on - strandat 1257.765 kb on - strandat 1257.781 kb on - strandat 1257.788 kb on - strandat 1257.888 kb on + strandat 1257.993 kb on - strand, within CCNA_01154at 1258.014 kb on - strand, within CCNA_01154at 1258.069 kb on + strand, within CCNA_01154at 1258.082 kb on + strand, within CCNA_01154at 1258.091 kb on - strand, within CCNA_01154at 1258.098 kb on + strand, within CCNA_01154at 1258.126 kb on + strand, within CCNA_01154at 1258.126 kb on + strand, within CCNA_01154at 1258.126 kb on + strand, within CCNA_01154at 1258.134 kb on - strand, within CCNA_01154at 1258.138 kb on + strand, within CCNA_01154at 1258.146 kb on - strand, within CCNA_01154at 1258.146 kb on - strand, within CCNA_01154at 1258.146 kb on - strand, within CCNA_01154at 1258.173 kb on + strand, within CCNA_01154at 1258.182 kb on - strand, within CCNA_01154at 1258.182 kb on - strand, within CCNA_01154at 1258.274 kb on + strand, within CCNA_01154at 1258.309 kb on + strand, within CCNA_01154at 1258.317 kb on - strand, within CCNA_01154at 1258.370 kb on + strand, within CCNA_01154at 1258.370 kb on + strand, within CCNA_01154at 1258.454 kb on + strand, within CCNA_01154at 1258.495 kb on + strand, within CCNA_01154at 1258.544 kb on + strandat 1258.558 kb on + strandat 1258.561 kb on - strandat 1258.564 kb on + strandat 1258.565 kb on - strandat 1258.566 kb on - strandat 1258.586 kb on + strandat 1258.594 kb on - strandat 1258.595 kb on + strandat 1258.610 kb on + strandat 1258.610 kb on + strandat 1258.618 kb on - strandat 1258.623 kb on - strandat 1258.680 kb on + strandat 1258.688 kb on - strandat 1258.715 kb on + strandat 1258.723 kb on - strandat 1258.723 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction a-Cyclodextrin (C)
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1,255,539 - CCNA_01151 0.83 +0.9
1,255,589 + CCNA_01151 0.88 +0.9
1,255,591 + CCNA_01151 0.89 -0.5
1,255,618 - -1.7
1,255,641 - +0.4
1,255,643 - +1.5
1,255,659 + +0.0
1,255,659 + -0.9
1,255,659 + -1.5
1,255,659 + -3.2
1,255,666 - -1.1
1,255,670 + +3.2
1,255,670 + -0.8
1,255,710 + +0.0
1,255,713 - -0.8
1,255,785 + -1.5
1,255,785 + -0.8
1,255,785 + +0.4
1,255,785 + -2.5
1,255,797 + CCNA_01152 0.10 -2.1
1,255,810 - CCNA_01152 0.12 +0.6
1,255,850 + CCNA_01152 0.17 -1.3
1,255,888 - CCNA_01152 0.21 -0.4
1,255,908 - CCNA_01152 0.24 -1.6
1,255,941 + CCNA_01152 0.28 +2.4
1,255,947 - CCNA_01152 0.28 +0.8
1,255,949 - CCNA_01152 0.29 -1.4
1,255,949 - CCNA_01152 0.29 -1.4
1,255,961 + CCNA_01152 0.30 +0.6
1,255,971 + CCNA_01152 0.31 -2.8
1,255,971 + CCNA_01152 0.31 +1.4
1,255,979 - CCNA_01152 0.32 +0.9
1,255,995 + CCNA_01152 0.34 -2.8
1,256,003 - CCNA_01152 0.35 -0.8
1,256,009 + CCNA_01152 0.36 -0.9
1,256,009 + CCNA_01152 0.36 -1.0
1,256,034 + CCNA_01152 0.39 +0.7
1,256,034 + CCNA_01152 0.39 -0.4
1,256,046 + CCNA_01152 0.40 +0.2
1,256,057 + CCNA_01152 0.42 +0.5
1,256,091 + CCNA_01152 0.46 +2.1
1,256,107 - CCNA_01152 0.48 -0.6
1,256,111 + CCNA_01152 0.48 -1.4
1,256,155 + CCNA_01152 0.54 -0.1
1,256,191 - CCNA_01152 0.58 -1.3
1,256,222 + CCNA_01152 0.62 +1.1
1,256,239 + CCNA_01152 0.64 +1.9
1,256,254 + CCNA_01152 0.66 +0.9
1,256,254 + CCNA_01152 0.66 +0.7
1,256,262 - CCNA_01152 0.67 -1.9
1,256,262 - CCNA_01152 0.67 -0.1
1,256,262 - CCNA_01152 0.67 -0.6
1,256,281 - CCNA_01152 0.69 +1.9
1,256,286 - CCNA_01152 0.70 -0.2
1,256,315 + CCNA_01152 0.73 -0.9
1,256,323 - CCNA_01152 0.74 -2.1
1,256,337 + CCNA_01152 0.76 +0.6
1,256,457 - +1.4
1,256,520 + +0.5
1,256,534 + +1.6
1,256,560 + +1.6
1,256,580 + -0.0
1,256,602 - -2.0
1,256,602 - -1.4
1,256,627 + +1.8
1,256,637 + +0.3
1,256,645 - -0.4
1,256,645 - -0.9
1,256,678 + CCNA_01153 0.11 -3.4
1,256,686 - CCNA_01153 0.12 -0.2
1,256,690 + CCNA_01153 0.12 +2.3
1,256,713 + CCNA_01153 0.14 -0.6
1,256,753 - CCNA_01153 0.17 -1.0
1,256,767 + CCNA_01153 0.18 -0.4
1,256,770 - CCNA_01153 0.18 +0.6
1,256,789 + CCNA_01153 0.20 +0.7
1,256,806 + CCNA_01153 0.21 +0.9
1,256,825 - CCNA_01153 0.22 +0.9
1,256,832 + CCNA_01153 0.23 -0.3
1,256,864 + CCNA_01153 0.26 -1.0
1,256,869 + CCNA_01153 0.26 +0.7
1,256,872 - CCNA_01153 0.26 +1.4
1,256,876 - CCNA_01153 0.26 -1.6
1,256,878 + CCNA_01153 0.27 +1.1
1,256,937 - CCNA_01153 0.31 +0.1
1,256,948 - CCNA_01153 0.32 -1.6
1,257,004 + CCNA_01153 0.36 -0.1
1,257,044 + CCNA_01153 0.40 +0.0
1,257,044 + CCNA_01153 0.40 +1.1
1,257,061 - CCNA_01153 0.41 -0.6
1,257,090 + CCNA_01153 0.43 +2.1
1,257,103 + CCNA_01153 0.44 -0.2
1,257,103 + CCNA_01153 0.44 +0.9
1,257,103 + CCNA_01153 0.44 -1.6
1,257,111 - CCNA_01153 0.45 -0.6
1,257,111 - CCNA_01153 0.45 +1.6
1,257,128 + CCNA_01153 0.46 +1.3
1,257,128 + CCNA_01153 0.46 -0.3
1,257,128 + CCNA_01153 0.46 +1.5
1,257,128 + CCNA_01153 0.46 +0.1
1,257,128 + CCNA_01153 0.46 -0.6
1,257,128 + CCNA_01153 0.46 -1.5
1,257,128 + CCNA_01153 0.46 +1.0
1,257,128 + CCNA_01153 0.46 -0.0
1,257,128 + CCNA_01153 0.46 +0.7
1,257,128 + CCNA_01153 0.46 +0.9
1,257,136 - CCNA_01153 0.47 +3.3
1,257,136 - CCNA_01153 0.47 -2.0
1,257,136 - CCNA_01153 0.47 -1.1
1,257,136 - CCNA_01153 0.47 -3.0
1,257,150 + CCNA_01153 0.48 -1.8
1,257,158 - CCNA_01153 0.48 -1.2
1,257,164 + CCNA_01153 0.49 +1.2
1,257,169 + CCNA_01153 0.49 +0.7
1,257,169 + CCNA_01153 0.49 -1.3
1,257,194 + CCNA_01153 0.51 +0.9
1,257,194 + CCNA_01153 0.51 +0.6
1,257,194 + CCNA_01153 0.51 +1.0
1,257,194 + CCNA_01153 0.51 +0.6
1,257,194 + CCNA_01153 0.51 +0.4
1,257,209 + CCNA_01153 0.52 +0.3
1,257,209 + CCNA_01153 0.52 +2.4
1,257,209 + CCNA_01153 0.52 +0.3
1,257,217 - CCNA_01153 0.53 -0.5
1,257,235 + CCNA_01153 0.54 +0.9
1,257,265 + CCNA_01153 0.57 -0.7
1,257,265 + CCNA_01153 0.57 -0.5
1,257,273 - CCNA_01153 0.57 +1.4
1,257,278 - CCNA_01153 0.58 -1.1
1,257,291 + CCNA_01153 0.59 +0.6
1,257,298 - CCNA_01153 0.59 -2.6
1,257,310 - CCNA_01153 0.60 +0.5
1,257,322 + CCNA_01153 0.61 +1.8
1,257,327 + CCNA_01153 0.62 +2.4
1,257,327 + CCNA_01153 0.62 +2.5
1,257,327 + CCNA_01153 0.62 +3.0
1,257,327 + CCNA_01153 0.62 +3.1
1,257,327 + CCNA_01153 0.62 +1.7
1,257,327 + CCNA_01153 0.62 +2.3
1,257,327 + CCNA_01153 0.62 +2.4
1,257,327 + CCNA_01153 0.62 +2.2
1,257,327 + CCNA_01153 0.62 +3.8
1,257,335 - CCNA_01153 0.62 +0.9
1,257,335 - CCNA_01153 0.62 -1.0
1,257,335 - CCNA_01153 0.62 +0.7
1,257,335 - CCNA_01153 0.62 -3.8
1,257,335 - CCNA_01153 0.62 -2.0
1,257,335 - CCNA_01153 0.62 +0.4
1,257,337 + CCNA_01153 0.62 +1.6
1,257,397 + CCNA_01153 0.67 -0.1
1,257,397 + CCNA_01153 0.67 +0.9
1,257,431 - CCNA_01153 0.70 +0.3
1,257,493 - CCNA_01153 0.75 -0.1
1,257,532 + CCNA_01153 0.78 -0.7
1,257,545 - CCNA_01153 0.79 +2.3
1,257,553 + CCNA_01153 0.79 -3.0
1,257,604 - CCNA_01153 0.83 -2.9
1,257,620 + CCNA_01153 0.85 -0.1
1,257,699 + +1.6
1,257,725 + -1.2
1,257,732 + +0.5
1,257,733 - +0.9
1,257,737 + -1.0
1,257,740 - -2.4
1,257,747 + -2.3
1,257,755 + -0.7
1,257,755 - -0.2
1,257,765 - -1.7
1,257,781 - -0.5
1,257,788 - -0.2
1,257,888 + +2.3
1,257,993 - CCNA_01154 0.13 -1.2
1,258,014 - CCNA_01154 0.16 -1.4
1,258,069 + CCNA_01154 0.24 +0.2
1,258,082 + CCNA_01154 0.26 +1.1
1,258,091 - CCNA_01154 0.27 -1.0
1,258,098 + CCNA_01154 0.28 +1.0
1,258,126 + CCNA_01154 0.32 +1.2
1,258,126 + CCNA_01154 0.32 +1.5
1,258,126 + CCNA_01154 0.32 +3.6
1,258,134 - CCNA_01154 0.34 -1.4
1,258,138 + CCNA_01154 0.34 +3.9
1,258,146 - CCNA_01154 0.35 -0.2
1,258,146 - CCNA_01154 0.35 -0.4
1,258,146 - CCNA_01154 0.35 -0.4
1,258,173 + CCNA_01154 0.39 +2.4
1,258,182 - CCNA_01154 0.41 +1.4
1,258,182 - CCNA_01154 0.41 -0.1
1,258,274 + CCNA_01154 0.54 +1.0
1,258,309 + CCNA_01154 0.59 +1.5
1,258,317 - CCNA_01154 0.60 -2.1
1,258,370 + CCNA_01154 0.68 +0.8
1,258,370 + CCNA_01154 0.68 +1.7
1,258,454 + CCNA_01154 0.80 +0.5
1,258,495 + CCNA_01154 0.86 +0.4
1,258,544 + -0.9
1,258,558 + +1.0
1,258,561 - +0.9
1,258,564 + -0.8
1,258,565 - -0.6
1,258,566 - +0.6
1,258,586 + +0.6
1,258,594 - -0.4
1,258,595 + +2.1
1,258,610 + +0.1
1,258,610 + +1.5
1,258,618 - -0.8
1,258,623 - -0.2
1,258,680 + -1.3
1,258,688 - +1.4
1,258,715 + -1.2
1,258,723 - +0.1
1,258,723 - -1.3

Or see this region's nucleotide sequence