Strain Fitness in Caulobacter crescentus NA1000 around CCNA_01090

Experiment: a-Cyclodextrin (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	a-Cyclodextrin (C)
1,195,291	+		CCNA_01089	0.41	+0.4
1,195,346	-		CCNA_01089	0.44	+0.7
1,195,400	+		CCNA_01089	0.47	-2.6
1,195,401	-		CCNA_01089	0.47	+1.6
1,195,401	-		CCNA_01089	0.47	-1.1
1,195,426	-		CCNA_01089	0.49	-0.2
1,195,459	-		CCNA_01089	0.51	+1.4
1,195,459	-		CCNA_01089	0.51	-0.7
1,195,499	-		CCNA_01089	0.53	+0.0
1,195,499	-		CCNA_01089	0.53	+1.2
1,195,517	-		CCNA_01089	0.54	+1.5
1,195,517	-		CCNA_01089	0.54	+0.8
1,195,625	-		CCNA_01089	0.60	+1.2
1,195,656	-		CCNA_01089	0.62	+1.7
1,195,661	-		CCNA_01089	0.62	+0.4
1,195,683	+		CCNA_01089	0.64	-1.6
1,195,702	+		CCNA_01089	0.65	-0.9
1,195,702	+		CCNA_01089	0.65	-1.4
1,195,702	+		CCNA_01089	0.65	+0.1
1,195,702	+		CCNA_01089	0.65	-1.0
1,195,710	-		CCNA_01089	0.65	+1.1
1,195,710	-		CCNA_01089	0.65	+3.7
1,195,710	-		CCNA_01089	0.65	+1.6
1,195,740	+		CCNA_01089	0.67	-0.4
1,195,740	+		CCNA_01089	0.67	-1.2
1,195,742	-		CCNA_01089	0.67	+0.7
1,195,774	-		CCNA_01089	0.69	+1.7
1,195,798	-		CCNA_01089	0.71	-0.4
1,195,811	+		CCNA_01089	0.71	+1.2
1,195,820	+		CCNA_01089	0.72	+3.1
1,195,835	+		CCNA_01089	0.73	+0.8
1,195,845	+		CCNA_01089	0.73	+0.5
1,195,853	-		CCNA_01089	0.74	+2.2
1,195,863	-		CCNA_01089	0.74	+1.1
1,195,863	-		CCNA_01089	0.74	+2.2
1,195,863	-		CCNA_01089	0.74	+1.1
1,195,870	+		CCNA_01089	0.75	-2.4
1,195,892	+		CCNA_01089	0.76	+0.4
1,195,911	-		CCNA_01089	0.77	+2.2
1,195,911	-		CCNA_01089	0.77	+1.6
1,196,001	-		CCNA_01089	0.83	+2.0
1,196,036	-		CCNA_01089	0.85	+1.5
1,196,062	-		CCNA_01089	0.86	+2.4
1,196,098	+		CCNA_01089	0.88	+0.1
1,196,107	-		CCNA_01089	0.89	+0.3
1,196,130	-				+2.2
1,196,130	-				+1.2
1,196,131	-				+0.9
1,196,188	-				+1.0
1,196,289	+				+0.2
1,196,321	-				+2.9
1,196,352	-				+1.7
1,196,358	-				+1.5
1,196,358	-				+2.1
1,196,384	+				-2.2
1,196,391	+				-0.4
1,196,392	+				+1.3
1,196,398	+				+1.0
1,196,407	+				+3.3
1,196,410	-				+0.9
1,196,436	-		CCNA_01090	0.11	+2.2
1,196,438	+		CCNA_01090	0.11	-1.0
1,196,438	+		CCNA_01090	0.11	-1.1
1,196,446	-		CCNA_01090	0.11	+2.9
1,196,446	-		CCNA_01090	0.11	+1.9
1,196,446	-		CCNA_01090	0.11	+2.5
1,196,454	-		CCNA_01090	0.12	+1.8
1,196,457	+		CCNA_01090	0.12	-1.0
1,196,478	+		CCNA_01090	0.14	-1.8
1,196,482	-		CCNA_01090	0.14	+1.7
1,196,557	-		CCNA_01090	0.20	+1.3
1,196,579	+		CCNA_01090	0.21	+1.6
1,196,587	-		CCNA_01090	0.22	+1.7
1,196,587	-		CCNA_01090	0.22	+1.9
1,196,685	+		CCNA_01090	0.29	-0.7
1,196,731	+		CCNA_01090	0.32	-2.3
1,196,739	-		CCNA_01090	0.33	+2.1
1,196,739	-		CCNA_01090	0.33	+1.3
1,196,776	+		CCNA_01090	0.36	-0.8
1,196,784	-		CCNA_01090	0.36	+3.3
1,196,784	-		CCNA_01090	0.36	+0.3
1,196,799	+		CCNA_01090	0.37	+0.3
1,196,808	-		CCNA_01090	0.38	+1.7
1,196,818	-		CCNA_01090	0.39	+1.5
1,196,818	-		CCNA_01090	0.39	+1.6
1,196,834	+		CCNA_01090	0.40	-2.6
1,196,865	+		CCNA_01090	0.42	+0.5
1,196,866	+		CCNA_01090	0.42	-2.0
1,196,866	+		CCNA_01090	0.42	-0.1
1,196,866	+		CCNA_01090	0.42	-2.4
1,196,872	+		CCNA_01090	0.43	-0.8
1,196,873	-		CCNA_01090	0.43	+1.1
1,196,873	-		CCNA_01090	0.43	+1.3
1,196,874	-		CCNA_01090	0.43	-0.2
1,196,885	-		CCNA_01090	0.43	-0.7
1,196,894	+		CCNA_01090	0.44	-0.6
1,196,929	-		CCNA_01090	0.47	+3.1
1,196,948	-		CCNA_01090	0.48	+1.6
1,197,001	-		CCNA_01090	0.52	-2.1
1,197,003	-		CCNA_01090	0.52	+2.6
1,197,012	-		CCNA_01090	0.53	+0.8
1,197,014	-		CCNA_01090	0.53	-0.1
1,197,035	+		CCNA_01090	0.54	-0.1
1,197,043	-		CCNA_01090	0.55	+0.8
1,197,048	-		CCNA_01090	0.55	+3.3
1,197,048	-		CCNA_01090	0.55	+1.3
1,197,083	+		CCNA_01090	0.58	-1.4
1,197,129	-		CCNA_01090	0.61	+1.5
1,197,159	-		CCNA_01090	0.63	+1.4
1,197,179	+		CCNA_01090	0.65	-0.6
1,197,199	+		CCNA_01090	0.66	-1.4
1,197,219	+		CCNA_01090	0.68	-3.1
1,197,233	+		CCNA_01090	0.69	-2.5
1,197,261	-		CCNA_01090	0.71	+1.4
1,197,281	-		CCNA_01090	0.72	+0.7
1,197,306	+		CCNA_01090	0.74	-2.6
1,197,322	-		CCNA_01090	0.75	+1.8
1,197,355	+		CCNA_01090	0.78	-0.9
1,197,362	+		CCNA_01090	0.78	+0.0
1,197,363	-		CCNA_01090	0.78	+1.3
1,197,405	-		CCNA_01090	0.81	-0.3
1,197,415	-		CCNA_01090	0.82	+1.3
1,197,510	-		CCNA_01090	0.89	+1.8
1,197,537	+				+2.4
1,197,618	+				-0.8
1,197,636	+				-2.0
1,197,644	-				-1.0
1,197,649	-				+2.3
1,197,696	+				+0.4
1,197,711	+				-1.3
1,197,711	+				-1.1
1,197,715	+				+0.6
1,197,719	-				-1.8
1,197,742	+				-0.6
1,197,742	+				-1.4
1,197,742	+				-2.0
1,197,742	+				-1.5
1,197,750	-				+1.1
1,197,750	-				+1.3
1,197,750	-				-2.9
1,197,750	-				-0.7
1,197,750	-				-0.3
1,197,750	-				-0.4
1,197,751	+				-0.6
1,197,752	+				-2.2
1,197,759	-				-1.2
1,197,771	+				-0.9
1,197,801	-		CCNA_01091	0.11	-0.4
1,197,824	-		CCNA_01091	0.15	-3.1
1,197,845	+		CCNA_01091	0.19	-1.2
1,197,845	+		CCNA_01091	0.19	-1.0
1,197,884	+		CCNA_01091	0.25	-1.6
1,197,967	+		CCNA_01091	0.39	+0.6
1,198,022	+		CCNA_01091	0.49	-1.0
1,198,022	+		CCNA_01091	0.49	-1.0
1,198,030	-		CCNA_01091	0.50	-0.9
1,198,030	-		CCNA_01091	0.50	-0.6
1,198,030	-		CCNA_01091	0.50	-1.2
1,198,030	-		CCNA_01091	0.50	+1.7
1,198,035	-		CCNA_01091	0.51	+0.6
1,198,067	+		CCNA_01091	0.56	-0.2
1,198,067	+		CCNA_01091	0.56	+0.6
1,198,067	+		CCNA_01091	0.56	+1.0
1,198,067	+		CCNA_01091	0.56	-0.2
1,198,067	+		CCNA_01091	0.56	+1.7
1,198,075	-		CCNA_01091	0.58	-1.4
1,198,075	-		CCNA_01091	0.58	-2.8
1,198,075	-		CCNA_01091	0.58	-2.3
1,198,087	+		CCNA_01091	0.60	-1.8
1,198,087	+		CCNA_01091	0.60	-3.0
1,198,087	+		CCNA_01091	0.60	+0.6
1,198,095	-		CCNA_01091	0.61	+1.6
1,198,095	-		CCNA_01091	0.61	+0.6
1,198,095	-		CCNA_01091	0.61	-1.0
1,198,095	-		CCNA_01091	0.61	-1.4
1,198,095	-		CCNA_01091	0.61	-1.6
1,198,095	-		CCNA_01091	0.61	+0.7
1,198,137	+		CCNA_01091	0.68	+1.1
1,198,168	+		CCNA_01091	0.73	-1.8
1,198,168	+		CCNA_01091	0.73	-1.2
1,198,168	+				+2.9
1,198,258	+		CCNA_01091	0.88	-0.3
1,198,263	+		CCNA_01091	0.89	+0.9
1,198,278	+				-0.2
1,198,278	+				-1.5
1,198,278	+				+0.4
1,198,278	+				+1.0
1,198,283	+				-2.3
1,198,286	-				-3.1
1,198,286	-				+0.1
1,198,286	-				-0.8
1,198,375	-				+0.0
1,198,419	-		CCNA_01092	0.13	-1.6
1,198,437	+		CCNA_01092	0.19	+2.1
1,198,437	+		CCNA_01092	0.19	-0.6
1,198,462	-		CCNA_01092	0.27	-0.7
1,198,519	+		CCNA_01092	0.46	-1.0
1,198,556	-		CCNA_01092	0.58	-0.3
1,198,563	+		CCNA_01092	0.61	+0.1
1,198,565	+		CCNA_01092	0.61	-0.7
1,198,573	+		CCNA_01092	0.64	-0.3
1,198,583	+		CCNA_01092	0.67	+1.9
1,198,585	+		CCNA_01092	0.68	-2.7
1,198,604	-		CCNA_01092	0.74	+0.8
1,198,651	+				-1.7
1,198,651	+				-0.4
1,198,651	+				-2.0
1,198,651	+				-0.9
1,198,651	+				-2.2
1,198,651	+				+0.1
1,198,659	-				-1.4
1,198,659	-				+2.2
1,198,659	-				+0.4
1,198,659	-				-0.7
1,198,659	-				+1.7