Strain Fitness in Caulobacter crescentus NA1000 around CCNA_00496

Experiment: a-Cyclodextrin (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_00493 and CCNA_00494 are separated by 6 nucleotidesCCNA_00494 and CCNA_00495 are separated by 52 nucleotidesCCNA_00495 and CCNA_00496 overlap by 4 nucleotidesCCNA_00496 and CCNA_00497 overlap by 1 nucleotidesCCNA_00497 and CCNA_00498 are separated by 60 nucleotides CCNA_00493: CCNA_00493 - putative polyketide cyclase-dehydrase/lipid transport protein, at 511,098 to 511,559 _00493 CCNA_00494: CCNA_00494 - transport protein, at 511,566 to 512,027 _00494 CCNA_00495: CCNA_00495 - putative membrane protein insertion efficiency factor YidD, at 512,080 to 512,334 _00495 CCNA_00496: CCNA_00496 - threonyl-tRNA synthetase, at 512,331 to 514,298 _00496 CCNA_00497: CCNA_00497 - putative rhamnosyl transferase, at 514,298 to 515,224 _00497 CCNA_00498: CCNA_00498 - hypothetical protein, at 515,285 to 515,404 _00498 Position (kb) 512 513 514 515Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 511.414 kb on + strand, within CCNA_00493at 511.416 kb on + strand, within CCNA_00493at 511.424 kb on + strand, within CCNA_00493at 511.424 kb on + strand, within CCNA_00493at 511.424 kb on + strand, within CCNA_00493at 511.424 kb on + strand, within CCNA_00493at 511.424 kb on + strand, within CCNA_00493at 511.432 kb on - strand, within CCNA_00493at 511.432 kb on - strand, within CCNA_00493at 511.432 kb on - strand, within CCNA_00493at 511.432 kb on - strand, within CCNA_00493at 511.432 kb on - strand, within CCNA_00493at 511.432 kb on - strand, within CCNA_00493at 511.456 kb on + strand, within CCNA_00493at 511.472 kb on + strand, within CCNA_00493at 511.483 kb on + strand, within CCNA_00493at 511.517 kb on + strandat 511.517 kb on + strandat 511.517 kb on + strandat 511.525 kb on - strandat 511.525 kb on - strandat 511.526 kb on + strandat 511.585 kb on - strandat 511.585 kb on - strandat 511.981 kb on - strandat 512.003 kb on + strandat 512.037 kb on + strandat 512.037 kb on + strandat 512.053 kb on - strandat 512.055 kb on - strandat 512.077 kb on + strandat 512.088 kb on + strandat 512.099 kb on + strandat 512.105 kb on + strandat 512.135 kb on - strand, within CCNA_00495at 512.145 kb on + strand, within CCNA_00495at 512.145 kb on + strand, within CCNA_00495at 512.157 kb on + strand, within CCNA_00495at 512.162 kb on + strand, within CCNA_00495at 512.162 kb on + strand, within CCNA_00495at 512.162 kb on + strand, within CCNA_00495at 512.170 kb on - strand, within CCNA_00495at 512.177 kb on + strand, within CCNA_00495at 512.177 kb on + strand, within CCNA_00495at 512.177 kb on + strand, within CCNA_00495at 512.185 kb on - strand, within CCNA_00495at 512.185 kb on - strand, within CCNA_00495at 512.205 kb on + strand, within CCNA_00495at 512.217 kb on + strandat 512.225 kb on - strand, within CCNA_00495at 514.235 kb on + strandat 514.250 kb on + strandat 514.250 kb on + strandat 514.256 kb on + strandat 514.265 kb on + strandat 514.265 kb on + strandat 514.265 kb on + strandat 514.275 kb on + strandat 514.305 kb on + strandat 514.310 kb on + strandat 514.313 kb on - strandat 514.319 kb on + strandat 514.351 kb on - strandat 514.352 kb on + strandat 514.353 kb on + strandat 514.362 kb on + strandat 514.402 kb on + strand, within CCNA_00497at 514.402 kb on + strand, within CCNA_00497at 514.410 kb on - strand, within CCNA_00497at 514.465 kb on - strand, within CCNA_00497at 514.512 kb on - strand, within CCNA_00497at 514.555 kb on - strand, within CCNA_00497at 514.574 kb on - strand, within CCNA_00497at 514.608 kb on - strandat 514.617 kb on + strand, within CCNA_00497at 514.636 kb on + strand, within CCNA_00497at 514.638 kb on - strand, within CCNA_00497at 514.642 kb on - strand, within CCNA_00497at 514.644 kb on - strand, within CCNA_00497at 514.657 kb on + strand, within CCNA_00497at 514.664 kb on + strand, within CCNA_00497at 514.681 kb on - strand, within CCNA_00497at 514.706 kb on + strand, within CCNA_00497at 514.706 kb on + strand, within CCNA_00497at 514.748 kb on + strand, within CCNA_00497at 514.753 kb on + strand, within CCNA_00497at 514.756 kb on - strand, within CCNA_00497at 514.757 kb on + strand, within CCNA_00497at 514.762 kb on + strand, within CCNA_00497at 514.767 kb on + strand, within CCNA_00497at 514.770 kb on - strand, within CCNA_00497at 514.772 kb on + strand, within CCNA_00497at 514.772 kb on + strand, within CCNA_00497at 514.772 kb on + strand, within CCNA_00497at 514.772 kb on + strand, within CCNA_00497at 514.775 kb on - strand, within CCNA_00497at 514.780 kb on - strand, within CCNA_00497at 514.780 kb on - strand, within CCNA_00497at 514.780 kb on - strand, within CCNA_00497at 514.787 kb on - strand, within CCNA_00497at 514.803 kb on + strand, within CCNA_00497at 514.803 kb on + strand, within CCNA_00497at 514.803 kb on + strand, within CCNA_00497at 514.811 kb on - strand, within CCNA_00497at 514.811 kb on - strand, within CCNA_00497at 514.813 kb on + strand, within CCNA_00497at 514.818 kb on + strand, within CCNA_00497at 514.852 kb on - strand, within CCNA_00497at 514.937 kb on - strand, within CCNA_00497at 514.980 kb on - strand, within CCNA_00497at 514.998 kb on + strand, within CCNA_00497at 515.003 kb on + strand, within CCNA_00497at 515.003 kb on + strand, within CCNA_00497at 515.008 kb on + strand, within CCNA_00497at 515.011 kb on - strand, within CCNA_00497at 515.014 kb on + strand, within CCNA_00497at 515.028 kb on - strand, within CCNA_00497at 515.039 kb on + strand, within CCNA_00497at 515.047 kb on - strand, within CCNA_00497at 515.049 kb on + strand, within CCNA_00497at 515.049 kb on + strand, within CCNA_00497at 515.057 kb on - strand, within CCNA_00497at 515.077 kb on + strand, within CCNA_00497at 515.077 kb on - strand, within CCNA_00497at 515.084 kb on + strand, within CCNA_00497at 515.085 kb on - strand, within CCNA_00497at 515.090 kb on + strand, within CCNA_00497at 515.090 kb on + strand, within CCNA_00497at 515.090 kb on + strand, within CCNA_00497at 515.155 kb on - strandat 515.220 kb on + strandat 515.230 kb on + strandat 515.231 kb on + strandat 515.238 kb on - strandat 515.257 kb on - strandat 515.277 kb on + strandat 515.290 kb on - strandat 515.297 kb on + strand, within CCNA_00498

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Per-strain Table

Position Strand Gene LocusTag Fraction a-Cyclodextrin (C)
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511,414 + CCNA_00493 0.68 +2.5
511,416 + CCNA_00493 0.69 +0.9
511,424 + CCNA_00493 0.71 +2.5
511,424 + CCNA_00493 0.71 +1.6
511,424 + CCNA_00493 0.71 +0.8
511,424 + CCNA_00493 0.71 +1.1
511,424 + CCNA_00493 0.71 +1.1
511,432 - CCNA_00493 0.72 -1.7
511,432 - CCNA_00493 0.72 -2.0
511,432 - CCNA_00493 0.72 -2.9
511,432 - CCNA_00493 0.72 -2.0
511,432 - CCNA_00493 0.72 -2.0
511,432 - CCNA_00493 0.72 -0.2
511,456 + CCNA_00493 0.77 +1.6
511,472 + CCNA_00493 0.81 +0.3
511,483 + CCNA_00493 0.83 +2.3
511,517 + +2.1
511,517 + +1.5
511,517 + +0.9
511,525 - -1.8
511,525 - +0.7
511,526 + +1.6
511,585 - -0.7
511,585 - +3.2
511,981 - +0.2
512,003 + +3.0
512,037 + +1.9
512,037 + +2.2
512,053 - -0.2
512,055 - -1.8
512,077 + +2.5
512,088 + +2.5
512,099 + -1.5
512,105 + -0.3
512,135 - CCNA_00495 0.22 -0.7
512,145 + CCNA_00495 0.25 +0.8
512,145 + CCNA_00495 0.25 -0.7
512,157 + CCNA_00495 0.30 +0.7
512,162 + CCNA_00495 0.32 -2.5
512,162 + CCNA_00495 0.32 -0.4
512,162 + CCNA_00495 0.32 -1.4
512,170 - CCNA_00495 0.35 +0.8
512,177 + CCNA_00495 0.38 +0.8
512,177 + CCNA_00495 0.38 -1.1
512,177 + CCNA_00495 0.38 +0.7
512,185 - CCNA_00495 0.41 -1.0
512,185 - CCNA_00495 0.41 -0.9
512,205 + CCNA_00495 0.49 +0.3
512,217 + +2.6
512,225 - CCNA_00495 0.57 -2.7
514,235 + +1.9
514,250 + +2.6
514,250 + +2.5
514,256 + +2.1
514,265 + +4.5
514,265 + +2.0
514,265 + +2.0
514,275 + +2.5
514,305 + +1.4
514,310 + +0.9
514,313 - -2.5
514,319 + +1.6
514,351 - +1.8
514,352 + +1.2
514,353 + +1.2
514,362 + +0.3
514,402 + CCNA_00497 0.11 +1.5
514,402 + CCNA_00497 0.11 +1.4
514,410 - CCNA_00497 0.12 -1.2
514,465 - CCNA_00497 0.18 -1.2
514,512 - CCNA_00497 0.23 -0.3
514,555 - CCNA_00497 0.28 -1.3
514,574 - CCNA_00497 0.30 -1.9
514,608 - +1.4
514,617 + CCNA_00497 0.34 -0.2
514,636 + CCNA_00497 0.36 +0.7
514,638 - CCNA_00497 0.37 -1.9
514,642 - CCNA_00497 0.37 -0.6
514,644 - CCNA_00497 0.37 -2.2
514,657 + CCNA_00497 0.39 +1.0
514,664 + CCNA_00497 0.39 +1.1
514,681 - CCNA_00497 0.41 +0.2
514,706 + CCNA_00497 0.44 -0.5
514,706 + CCNA_00497 0.44 +1.4
514,748 + CCNA_00497 0.49 +0.7
514,753 + CCNA_00497 0.49 +0.5
514,756 - CCNA_00497 0.49 -0.0
514,757 + CCNA_00497 0.50 -1.0
514,762 + CCNA_00497 0.50 +1.1
514,767 + CCNA_00497 0.51 +0.2
514,770 - CCNA_00497 0.51 -0.7
514,772 + CCNA_00497 0.51 +0.5
514,772 + CCNA_00497 0.51 +1.7
514,772 + CCNA_00497 0.51 +0.9
514,772 + CCNA_00497 0.51 +0.8
514,775 - CCNA_00497 0.51 -3.6
514,780 - CCNA_00497 0.52 -1.9
514,780 - CCNA_00497 0.52 -1.8
514,780 - CCNA_00497 0.52 -0.3
514,787 - CCNA_00497 0.53 -1.9
514,803 + CCNA_00497 0.54 +1.7
514,803 + CCNA_00497 0.54 +1.2
514,803 + CCNA_00497 0.54 +0.2
514,811 - CCNA_00497 0.55 -0.7
514,811 - CCNA_00497 0.55 +0.0
514,813 + CCNA_00497 0.56 +0.5
514,818 + CCNA_00497 0.56 +1.2
514,852 - CCNA_00497 0.60 -0.6
514,937 - CCNA_00497 0.69 -2.3
514,980 - CCNA_00497 0.74 -1.4
514,998 + CCNA_00497 0.76 +0.4
515,003 + CCNA_00497 0.76 +2.4
515,003 + CCNA_00497 0.76 +0.7
515,008 + CCNA_00497 0.77 +2.7
515,011 - CCNA_00497 0.77 +1.7
515,014 + CCNA_00497 0.77 +1.0
515,028 - CCNA_00497 0.79 -0.2
515,039 + CCNA_00497 0.80 +0.2
515,047 - CCNA_00497 0.81 -2.6
515,049 + CCNA_00497 0.81 +1.6
515,049 + CCNA_00497 0.81 +0.4
515,057 - CCNA_00497 0.82 -0.8
515,077 + CCNA_00497 0.84 +0.3
515,077 - CCNA_00497 0.84 -0.8
515,084 + CCNA_00497 0.85 +0.7
515,085 - CCNA_00497 0.85 -1.7
515,090 + CCNA_00497 0.85 +0.7
515,090 + CCNA_00497 0.85 +1.1
515,090 + CCNA_00497 0.85 +1.1
515,155 - -1.7
515,220 + +2.7
515,230 + +2.0
515,231 + +2.0
515,238 - +1.4
515,257 - +0.4
515,277 + +3.6
515,290 - -2.4
515,297 + CCNA_00498 0.10 +3.6

Or see this region's nucleotide sequence