Strain Fitness in Caulobacter crescentus NA1000 around CCNA_00414

Experiment: a-Cyclodextrin (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_00413 and CCNA_00414 are separated by 20 nucleotidesCCNA_00414 and CCNA_00415 are separated by 258 nucleotides CCNA_00413: CCNA_00413 - poly(A) polymerase/tRNA-nucleotidyltransferase, at 426,379 to 427,632 _00413 CCNA_00414: CCNA_00414 - type 1 glutamine amidotransferase (GATase1) domain protein, at 427,653 to 428,354 _00414 CCNA_00415: CCNA_00415 - hypothetical protein, at 428,613 to 429,584 _00415 Position (kb) 427 428 429Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 427.599 kb on + strandat 427.599 kb on + strandat 427.599 kb on + strandat 427.607 kb on - strandat 427.607 kb on - strandat 427.617 kb on + strandat 427.617 kb on + strandat 427.625 kb on - strandat 427.625 kb on - strandat 427.625 kb on - strandat 427.625 kb on - strandat 427.631 kb on - strandat 427.693 kb on + strandat 427.703 kb on + strandat 427.739 kb on + strand, within CCNA_00414at 427.744 kb on + strand, within CCNA_00414at 427.781 kb on - strand, within CCNA_00414at 427.844 kb on + strand, within CCNA_00414at 427.859 kb on + strand, within CCNA_00414at 427.859 kb on + strand, within CCNA_00414at 427.867 kb on - strand, within CCNA_00414at 427.867 kb on - strand, within CCNA_00414at 427.867 kb on - strand, within CCNA_00414at 427.867 kb on - strand, within CCNA_00414at 427.925 kb on - strand, within CCNA_00414at 427.927 kb on + strand, within CCNA_00414at 427.940 kb on + strand, within CCNA_00414at 427.948 kb on - strand, within CCNA_00414at 427.968 kb on + strand, within CCNA_00414at 427.979 kb on + strand, within CCNA_00414at 427.985 kb on + strand, within CCNA_00414at 427.985 kb on + strand, within CCNA_00414at 427.985 kb on + strand, within CCNA_00414at 427.985 kb on + strand, within CCNA_00414at 428.014 kb on - strand, within CCNA_00414at 428.014 kb on - strand, within CCNA_00414at 428.073 kb on + strand, within CCNA_00414at 428.078 kb on + strand, within CCNA_00414at 428.078 kb on + strand, within CCNA_00414at 428.078 kb on + strand, within CCNA_00414at 428.086 kb on - strand, within CCNA_00414at 428.093 kb on - strand, within CCNA_00414at 428.119 kb on - strand, within CCNA_00414at 428.181 kb on - strand, within CCNA_00414at 428.225 kb on - strand, within CCNA_00414at 428.230 kb on - strand, within CCNA_00414at 428.241 kb on + strand, within CCNA_00414at 428.243 kb on + strand, within CCNA_00414at 428.243 kb on + strand, within CCNA_00414at 428.243 kb on + strand, within CCNA_00414at 428.244 kb on + strand, within CCNA_00414at 428.244 kb on + strand, within CCNA_00414at 428.251 kb on - strand, within CCNA_00414at 428.252 kb on - strand, within CCNA_00414at 428.279 kb on - strand, within CCNA_00414at 428.280 kb on + strand, within CCNA_00414at 428.328 kb on - strandat 428.342 kb on + strandat 428.343 kb on + strandat 428.343 kb on + strandat 428.349 kb on + strandat 428.384 kb on + strandat 428.385 kb on + strandat 428.385 kb on + strandat 428.385 kb on + strandat 428.390 kb on + strandat 428.393 kb on - strandat 428.393 kb on - strandat 428.398 kb on - strandat 428.431 kb on + strandat 428.454 kb on + strandat 428.507 kb on - strandat 428.530 kb on - strandat 428.569 kb on + strandat 428.569 kb on + strandat 428.577 kb on - strandat 428.582 kb on - strandat 428.591 kb on - strandat 428.593 kb on + strandat 428.593 kb on + strandat 428.601 kb on - strandat 428.625 kb on - strandat 428.646 kb on - strandat 428.667 kb on + strandat 428.672 kb on + strandat 428.675 kb on - strandat 428.695 kb on + strandat 428.703 kb on - strandat 428.723 kb on - strand, within CCNA_00415at 428.723 kb on - strand, within CCNA_00415at 428.774 kb on + strand, within CCNA_00415at 428.779 kb on + strand, within CCNA_00415at 428.786 kb on + strand, within CCNA_00415at 428.860 kb on + strand, within CCNA_00415at 428.885 kb on - strand, within CCNA_00415at 428.898 kb on - strand, within CCNA_00415at 428.975 kb on - strand, within CCNA_00415at 428.976 kb on + strand, within CCNA_00415at 428.976 kb on + strand, within CCNA_00415at 428.976 kb on + strand, within CCNA_00415at 428.984 kb on - strand, within CCNA_00415at 428.984 kb on - strand, within CCNA_00415at 428.984 kb on - strand, within CCNA_00415at 428.984 kb on - strand, within CCNA_00415at 428.995 kb on + strand, within CCNA_00415at 429.000 kb on + strand, within CCNA_00415at 429.003 kb on - strand, within CCNA_00415at 429.008 kb on - strand, within CCNA_00415at 429.012 kb on + strand, within CCNA_00415at 429.020 kb on - strand, within CCNA_00415at 429.030 kb on - strand, within CCNA_00415at 429.031 kb on - strand, within CCNA_00415at 429.032 kb on + strand, within CCNA_00415at 429.062 kb on - strand, within CCNA_00415at 429.113 kb on + strand, within CCNA_00415at 429.179 kb on - strand, within CCNA_00415at 429.179 kb on - strand, within CCNA_00415at 429.206 kb on - strand, within CCNA_00415at 429.266 kb on - strand, within CCNA_00415at 429.269 kb on - strand, within CCNA_00415at 429.329 kb on + strand, within CCNA_00415at 429.336 kb on + strand, within CCNA_00415

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Per-strain Table

Position Strand Gene LocusTag Fraction a-Cyclodextrin (C)
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427,599 + +0.9
427,599 + +0.4
427,599 + +3.5
427,607 - -0.1
427,607 - +0.7
427,617 + +0.8
427,617 + +1.3
427,625 - +1.1
427,625 - -1.7
427,625 - -0.5
427,625 - -0.6
427,631 - -0.9
427,693 + +1.1
427,703 + +1.6
427,739 + CCNA_00414 0.12 +0.8
427,744 + CCNA_00414 0.13 -0.1
427,781 - CCNA_00414 0.18 -2.4
427,844 + CCNA_00414 0.27 +2.0
427,859 + CCNA_00414 0.29 +1.7
427,859 + CCNA_00414 0.29 +1.6
427,867 - CCNA_00414 0.30 -1.0
427,867 - CCNA_00414 0.30 +0.0
427,867 - CCNA_00414 0.30 -0.2
427,867 - CCNA_00414 0.30 -1.8
427,925 - CCNA_00414 0.39 -1.0
427,927 + CCNA_00414 0.39 +1.1
427,940 + CCNA_00414 0.41 +1.4
427,948 - CCNA_00414 0.42 -0.3
427,968 + CCNA_00414 0.45 +1.7
427,979 + CCNA_00414 0.46 +1.7
427,985 + CCNA_00414 0.47 +1.2
427,985 + CCNA_00414 0.47 +1.7
427,985 + CCNA_00414 0.47 -0.1
427,985 + CCNA_00414 0.47 +0.4
428,014 - CCNA_00414 0.51 -2.1
428,014 - CCNA_00414 0.51 -1.8
428,073 + CCNA_00414 0.60 +2.0
428,078 + CCNA_00414 0.61 -0.4
428,078 + CCNA_00414 0.61 +0.9
428,078 + CCNA_00414 0.61 +2.1
428,086 - CCNA_00414 0.62 -1.3
428,093 - CCNA_00414 0.63 -1.7
428,119 - CCNA_00414 0.66 +1.1
428,181 - CCNA_00414 0.75 -1.0
428,225 - CCNA_00414 0.81 -1.4
428,230 - CCNA_00414 0.82 -2.1
428,241 + CCNA_00414 0.84 +3.0
428,243 + CCNA_00414 0.84 +1.4
428,243 + CCNA_00414 0.84 +2.0
428,243 + CCNA_00414 0.84 +0.7
428,244 + CCNA_00414 0.84 +2.2
428,244 + CCNA_00414 0.84 +4.6
428,251 - CCNA_00414 0.85 -0.0
428,252 - CCNA_00414 0.85 +1.4
428,279 - CCNA_00414 0.89 -0.2
428,280 + CCNA_00414 0.89 -0.6
428,328 - +0.1
428,342 + +1.6
428,343 + +0.8
428,343 + +1.5
428,349 + +1.4
428,384 + +1.5
428,385 + +1.8
428,385 + +2.1
428,385 + +2.4
428,390 + +2.7
428,393 - -1.0
428,393 - -1.7
428,398 - +0.6
428,431 + -0.4
428,454 + -1.6
428,507 - -0.0
428,530 - +0.8
428,569 + +0.5
428,569 + +0.9
428,577 - -0.7
428,582 - +0.5
428,591 - +1.6
428,593 + -0.3
428,593 + +0.1
428,601 - -0.5
428,625 - +0.0
428,646 - +0.0
428,667 + -1.5
428,672 + -0.3
428,675 - +0.2
428,695 + -1.7
428,703 - -1.0
428,723 - CCNA_00415 0.11 -0.1
428,723 - CCNA_00415 0.11 +2.1
428,774 + CCNA_00415 0.17 +0.0
428,779 + CCNA_00415 0.17 +0.4
428,786 + CCNA_00415 0.18 +0.3
428,860 + CCNA_00415 0.25 +0.7
428,885 - CCNA_00415 0.28 +0.5
428,898 - CCNA_00415 0.29 -0.7
428,975 - CCNA_00415 0.37 -0.2
428,976 + CCNA_00415 0.37 +0.2
428,976 + CCNA_00415 0.37 -0.7
428,976 + CCNA_00415 0.37 -3.4
428,984 - CCNA_00415 0.38 -1.1
428,984 - CCNA_00415 0.38 +0.8
428,984 - CCNA_00415 0.38 +0.4
428,984 - CCNA_00415 0.38 -0.0
428,995 + CCNA_00415 0.39 -0.2
429,000 + CCNA_00415 0.40 +0.1
429,003 - CCNA_00415 0.40 -0.6
429,008 - CCNA_00415 0.41 +0.9
429,012 + CCNA_00415 0.41 -2.3
429,020 - CCNA_00415 0.42 -0.9
429,030 - CCNA_00415 0.43 +0.3
429,031 - CCNA_00415 0.43 +0.7
429,032 + CCNA_00415 0.43 -0.6
429,062 - CCNA_00415 0.46 +1.1
429,113 + CCNA_00415 0.51 -0.1
429,179 - CCNA_00415 0.58 +2.0
429,179 - CCNA_00415 0.58 -0.1
429,206 - CCNA_00415 0.61 +1.6
429,266 - CCNA_00415 0.67 +0.3
429,269 - CCNA_00415 0.67 +0.8
429,329 + CCNA_00415 0.74 +0.1
429,336 + CCNA_00415 0.74 +0.3

Or see this region's nucleotide sequence