Strain Fitness in Caulobacter crescentus NA1000 around CCNA_00368

Experiment: a-Cyclodextrin (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_00367 and CCNA_00368 are separated by 5 nucleotidesCCNA_00368 and CCNA_00369 are separated by 149 nucleotides CCNA_00367: CCNA_00367 - phosphonates-binding protein, at 383,800 to 384,825 _00367 CCNA_00368: CCNA_00368 - phosphonates transport system permease protein phnE, at 384,831 to 385,667 _00368 CCNA_00369: CCNA_00369 - magnesium and cobalt efflux protein corC-like protein, at 385,817 to 387,130 _00369 Position (kb) 384 385 386Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5at 383.839 kb on + strandat 383.845 kb on + strandat 383.845 kb on + strandat 383.853 kb on - strandat 383.853 kb on - strandat 383.853 kb on - strandat 383.864 kb on + strandat 383.869 kb on + strandat 383.869 kb on + strandat 383.877 kb on - strandat 383.922 kb on - strand, within CCNA_00367at 383.948 kb on - strand, within CCNA_00367at 383.948 kb on - strand, within CCNA_00367at 383.959 kb on - strand, within CCNA_00367at 383.971 kb on - strand, within CCNA_00367at 383.990 kb on + strand, within CCNA_00367at 383.990 kb on + strand, within CCNA_00367at 383.998 kb on - strand, within CCNA_00367at 384.004 kb on + strand, within CCNA_00367at 384.033 kb on + strand, within CCNA_00367at 384.041 kb on - strand, within CCNA_00367at 384.047 kb on + strand, within CCNA_00367at 384.061 kb on + strand, within CCNA_00367at 384.069 kb on - strand, within CCNA_00367at 384.121 kb on + strand, within CCNA_00367at 384.165 kb on - strand, within CCNA_00367at 384.205 kb on + strand, within CCNA_00367at 384.205 kb on + strand, within CCNA_00367at 384.205 kb on + strand, within CCNA_00367at 384.205 kb on + strand, within CCNA_00367at 384.205 kb on + strand, within CCNA_00367at 384.205 kb on + strand, within CCNA_00367at 384.205 kb on + strand, within CCNA_00367at 384.213 kb on - strand, within CCNA_00367at 384.213 kb on - strand, within CCNA_00367at 384.213 kb on - strand, within CCNA_00367at 384.213 kb on - strand, within CCNA_00367at 384.213 kb on - strand, within CCNA_00367at 384.213 kb on - strand, within CCNA_00367at 384.213 kb on - strand, within CCNA_00367at 384.214 kb on + strand, within CCNA_00367at 384.214 kb on + strand, within CCNA_00367at 384.275 kb on + strand, within CCNA_00367at 384.283 kb on + strand, within CCNA_00367at 384.290 kb on + strand, within CCNA_00367at 384.295 kb on + strand, within CCNA_00367at 384.298 kb on - strand, within CCNA_00367at 384.303 kb on - strand, within CCNA_00367at 384.342 kb on + strand, within CCNA_00367at 384.354 kb on + strand, within CCNA_00367at 384.390 kb on + strand, within CCNA_00367at 384.390 kb on + strand, within CCNA_00367at 384.403 kb on + strand, within CCNA_00367at 384.416 kb on - strand, within CCNA_00367at 384.429 kb on + strand, within CCNA_00367at 384.429 kb on + strand, within CCNA_00367at 384.432 kb on - strand, within CCNA_00367at 384.437 kb on - strand, within CCNA_00367at 384.437 kb on - strand, within CCNA_00367at 384.492 kb on + strand, within CCNA_00367at 384.507 kb on + strand, within CCNA_00367at 384.507 kb on + strand, within CCNA_00367at 384.515 kb on - strand, within CCNA_00367at 384.566 kb on + strand, within CCNA_00367at 384.574 kb on - strand, within CCNA_00367at 384.576 kb on + strand, within CCNA_00367at 384.579 kb on - strand, within CCNA_00367at 384.606 kb on + strand, within CCNA_00367at 384.611 kb on + strand, within CCNA_00367at 384.635 kb on + strand, within CCNA_00367at 384.635 kb on + strand, within CCNA_00367at 384.670 kb on - strand, within CCNA_00367at 384.670 kb on - strand, within CCNA_00367at 384.708 kb on - strand, within CCNA_00367at 384.726 kb on + strandat 384.726 kb on + strandat 384.726 kb on + strandat 384.726 kb on + strandat 384.726 kb on + strandat 384.726 kb on + strandat 384.726 kb on + strandat 384.726 kb on + strandat 384.726 kb on + strandat 384.734 kb on - strandat 384.734 kb on - strandat 384.734 kb on - strandat 384.734 kb on - strandat 384.734 kb on - strandat 384.734 kb on - strandat 384.759 kb on - strandat 384.767 kb on + strandat 384.770 kb on - strandat 384.784 kb on + strandat 384.851 kb on + strandat 384.889 kb on + strandat 384.894 kb on + strandat 384.894 kb on + strandat 384.894 kb on + strandat 384.894 kb on + strandat 384.902 kb on - strandat 384.902 kb on - strandat 384.902 kb on - strandat 384.902 kb on - strandat 384.902 kb on - strandat 384.909 kb on + strandat 384.910 kb on + strandat 384.914 kb on + strandat 384.914 kb on + strandat 384.925 kb on + strand, within CCNA_00368at 384.933 kb on - strand, within CCNA_00368at 384.933 kb on - strand, within CCNA_00368at 384.950 kb on + strand, within CCNA_00368at 384.974 kb on - strand, within CCNA_00368at 385.010 kb on + strand, within CCNA_00368at 385.020 kb on + strand, within CCNA_00368at 385.055 kb on + strand, within CCNA_00368at 385.077 kb on - strand, within CCNA_00368at 385.141 kb on - strand, within CCNA_00368at 385.141 kb on - strand, within CCNA_00368at 385.182 kb on + strand, within CCNA_00368at 385.216 kb on + strand, within CCNA_00368at 385.224 kb on - strand, within CCNA_00368at 385.229 kb on - strand, within CCNA_00368at 385.254 kb on + strand, within CCNA_00368at 385.277 kb on + strand, within CCNA_00368at 385.279 kb on + strand, within CCNA_00368at 385.313 kb on + strand, within CCNA_00368at 385.334 kb on + strand, within CCNA_00368at 385.415 kb on + strand, within CCNA_00368at 385.419 kb on - strand, within CCNA_00368at 385.423 kb on - strand, within CCNA_00368at 385.424 kb on + strand, within CCNA_00368at 385.449 kb on + strand, within CCNA_00368at 385.465 kb on + strand, within CCNA_00368at 385.465 kb on + strand, within CCNA_00368at 385.465 kb on + strand, within CCNA_00368at 385.465 kb on + strand, within CCNA_00368at 385.470 kb on + strand, within CCNA_00368at 385.478 kb on - strand, within CCNA_00368at 385.488 kb on + strand, within CCNA_00368at 385.509 kb on + strand, within CCNA_00368at 385.517 kb on - strand, within CCNA_00368at 385.539 kb on + strand, within CCNA_00368at 385.604 kb on - strandat 385.643 kb on + strandat 385.645 kb on - strandat 385.656 kb on + strandat 385.656 kb on + strandat 385.656 kb on + strandat 385.656 kb on + strandat 385.661 kb on + strandat 385.661 kb on + strandat 385.664 kb on - strandat 385.664 kb on - strandat 385.664 kb on - strandat 385.666 kb on + strandat 385.666 kb on + strandat 385.666 kb on + strandat 385.666 kb on + strandat 385.666 kb on + strandat 385.666 kb on + strandat 385.714 kb on + strandat 385.721 kb on - strandat 385.721 kb on - strandat 385.757 kb on + strandat 385.760 kb on + strandat 385.798 kb on + strandat 385.814 kb on + strandat 385.866 kb on - strandat 385.878 kb on + strandat 385.923 kb on + strandat 385.953 kb on + strand, within CCNA_00369at 385.957 kb on + strand, within CCNA_00369at 385.960 kb on - strand, within CCNA_00369at 385.966 kb on - strand, within CCNA_00369at 385.995 kb on - strand, within CCNA_00369at 386.010 kb on + strand, within CCNA_00369at 386.013 kb on - strand, within CCNA_00369at 386.094 kb on + strand, within CCNA_00369at 386.112 kb on + strand, within CCNA_00369at 386.112 kb on - strand, within CCNA_00369at 386.112 kb on - strand, within CCNA_00369at 386.147 kb on + strand, within CCNA_00369at 386.147 kb on + strand, within CCNA_00369at 386.155 kb on - strand, within CCNA_00369at 386.156 kb on - strand, within CCNA_00369at 386.159 kb on + strand, within CCNA_00369at 386.168 kb on + strand, within CCNA_00369at 386.171 kb on - strand, within CCNA_00369at 386.198 kb on + strand, within CCNA_00369at 386.211 kb on - strand, within CCNA_00369at 386.242 kb on - strand, within CCNA_00369at 386.247 kb on - strand, within CCNA_00369at 386.247 kb on - strand, within CCNA_00369at 386.261 kb on + strand, within CCNA_00369at 386.274 kb on + strand, within CCNA_00369at 386.280 kb on - strand, within CCNA_00369at 386.284 kb on + strand, within CCNA_00369at 386.298 kb on - strand, within CCNA_00369at 386.325 kb on + strand, within CCNA_00369at 386.333 kb on - strand, within CCNA_00369at 386.333 kb on - strand, within CCNA_00369at 386.352 kb on + strand, within CCNA_00369at 386.362 kb on + strand, within CCNA_00369at 386.362 kb on + strand, within CCNA_00369at 386.362 kb on + strand, within CCNA_00369at 386.370 kb on - strand, within CCNA_00369at 386.394 kb on - strand, within CCNA_00369at 386.396 kb on + strand, within CCNA_00369at 386.404 kb on - strand, within CCNA_00369at 386.406 kb on + strand, within CCNA_00369at 386.527 kb on + strand, within CCNA_00369at 386.562 kb on - strand, within CCNA_00369at 386.608 kb on + strand, within CCNA_00369at 386.616 kb on - strand, within CCNA_00369at 386.642 kb on + strand, within CCNA_00369

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Per-strain Table

Position Strand Gene LocusTag Fraction a-Cyclodextrin (C)
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383,839 + +1.5
383,845 + +2.2
383,845 + +1.6
383,853 - +0.6
383,853 - -2.0
383,853 - -0.6
383,864 + +1.5
383,869 + +1.8
383,869 + +1.7
383,877 - -3.2
383,922 - CCNA_00367 0.12 -0.8
383,948 - CCNA_00367 0.14 -2.0
383,948 - CCNA_00367 0.14 -1.4
383,959 - CCNA_00367 0.15 +0.7
383,971 - CCNA_00367 0.17 +0.8
383,990 + CCNA_00367 0.19 +1.5
383,990 + CCNA_00367 0.19 +3.7
383,998 - CCNA_00367 0.19 +1.6
384,004 + CCNA_00367 0.20 +4.8
384,033 + CCNA_00367 0.23 +1.8
384,041 - CCNA_00367 0.23 -0.8
384,047 + CCNA_00367 0.24 +1.7
384,061 + CCNA_00367 0.25 +1.6
384,069 - CCNA_00367 0.26 +0.4
384,121 + CCNA_00367 0.31 +2.6
384,165 - CCNA_00367 0.36 -1.9
384,205 + CCNA_00367 0.39 +2.1
384,205 + CCNA_00367 0.39 +1.6
384,205 + CCNA_00367 0.39 +1.9
384,205 + CCNA_00367 0.39 +0.5
384,205 + CCNA_00367 0.39 +1.7
384,205 + CCNA_00367 0.39 +3.7
384,205 + CCNA_00367 0.39 +1.7
384,213 - CCNA_00367 0.40 -2.6
384,213 - CCNA_00367 0.40 -1.5
384,213 - CCNA_00367 0.40 -2.6
384,213 - CCNA_00367 0.40 +1.1
384,213 - CCNA_00367 0.40 -0.3
384,213 - CCNA_00367 0.40 -0.3
384,213 - CCNA_00367 0.40 -1.6
384,214 + CCNA_00367 0.40 +1.2
384,214 + CCNA_00367 0.40 +1.3
384,275 + CCNA_00367 0.46 +2.7
384,283 + CCNA_00367 0.47 +1.8
384,290 + CCNA_00367 0.48 +1.8
384,295 + CCNA_00367 0.48 +0.5
384,298 - CCNA_00367 0.49 +0.9
384,303 - CCNA_00367 0.49 +0.1
384,342 + CCNA_00367 0.53 +1.5
384,354 + CCNA_00367 0.54 +2.8
384,390 + CCNA_00367 0.58 +1.4
384,390 + CCNA_00367 0.58 +2.6
384,403 + CCNA_00367 0.59 +3.9
384,416 - CCNA_00367 0.60 -0.9
384,429 + CCNA_00367 0.61 +0.3
384,429 + CCNA_00367 0.61 +2.2
384,432 - CCNA_00367 0.62 -0.8
384,437 - CCNA_00367 0.62 -2.2
384,437 - CCNA_00367 0.62 +0.5
384,492 + CCNA_00367 0.67 +2.0
384,507 + CCNA_00367 0.69 +1.9
384,507 + CCNA_00367 0.69 -0.7
384,515 - CCNA_00367 0.70 +0.4
384,566 + CCNA_00367 0.75 +2.3
384,574 - CCNA_00367 0.75 +0.7
384,576 + CCNA_00367 0.76 +0.7
384,579 - CCNA_00367 0.76 +0.4
384,606 + CCNA_00367 0.79 +1.7
384,611 + CCNA_00367 0.79 +2.2
384,635 + CCNA_00367 0.81 +1.9
384,635 + CCNA_00367 0.81 +1.7
384,670 - CCNA_00367 0.85 -1.4
384,670 - CCNA_00367 0.85 +0.5
384,708 - CCNA_00367 0.88 -0.8
384,726 + +1.9
384,726 + +2.1
384,726 + +5.5
384,726 + +2.3
384,726 + +2.0
384,726 + +1.8
384,726 + +2.0
384,726 + +2.0
384,726 + +2.0
384,734 - -1.9
384,734 - +1.4
384,734 - -0.5
384,734 - +0.3
384,734 - +0.3
384,734 - +3.3
384,759 - -0.4
384,767 + +2.3
384,770 - -1.5
384,784 + +3.5
384,851 + +2.5
384,889 + +2.1
384,894 + +1.7
384,894 + +2.5
384,894 + +5.3
384,894 + +2.5
384,902 - +0.1
384,902 - +0.9
384,902 - +3.8
384,902 - -0.2
384,902 - +0.4
384,909 + +2.2
384,910 + +1.4
384,914 + +2.5
384,914 + +2.5
384,925 + CCNA_00368 0.11 +1.8
384,933 - CCNA_00368 0.12 -0.9
384,933 - CCNA_00368 0.12 -0.2
384,950 + CCNA_00368 0.14 +3.2
384,974 - CCNA_00368 0.17 -0.9
385,010 + CCNA_00368 0.21 +2.2
385,020 + CCNA_00368 0.23 +2.9
385,055 + CCNA_00368 0.27 +1.9
385,077 - CCNA_00368 0.29 +0.6
385,141 - CCNA_00368 0.37 -1.8
385,141 - CCNA_00368 0.37 +0.1
385,182 + CCNA_00368 0.42 +2.4
385,216 + CCNA_00368 0.46 +2.5
385,224 - CCNA_00368 0.47 -0.3
385,229 - CCNA_00368 0.48 +2.9
385,254 + CCNA_00368 0.51 +3.0
385,277 + CCNA_00368 0.53 +2.7
385,279 + CCNA_00368 0.54 +2.4
385,313 + CCNA_00368 0.58 +3.0
385,334 + CCNA_00368 0.60 +2.5
385,415 + CCNA_00368 0.70 +1.8
385,419 - CCNA_00368 0.70 -0.6
385,423 - CCNA_00368 0.71 +0.4
385,424 + CCNA_00368 0.71 +2.6
385,449 + CCNA_00368 0.74 +1.9
385,465 + CCNA_00368 0.76 +2.8
385,465 + CCNA_00368 0.76 +1.8
385,465 + CCNA_00368 0.76 +3.0
385,465 + CCNA_00368 0.76 +3.0
385,470 + CCNA_00368 0.76 -1.1
385,478 - CCNA_00368 0.77 +1.0
385,488 + CCNA_00368 0.78 +2.3
385,509 + CCNA_00368 0.81 +3.1
385,517 - CCNA_00368 0.82 -0.7
385,539 + CCNA_00368 0.85 +1.6
385,604 - +0.6
385,643 + +3.2
385,645 - +0.1
385,656 + +2.8
385,656 + +3.6
385,656 + +3.1
385,656 + +3.0
385,661 + +2.4
385,661 + +3.5
385,664 - +1.1
385,664 - +0.5
385,664 - +1.1
385,666 + +1.9
385,666 + +2.5
385,666 + +2.9
385,666 + +2.8
385,666 + +2.2
385,666 + +2.5
385,714 + +1.2
385,721 - -0.9
385,721 - +1.4
385,757 + +0.2
385,760 + -0.7
385,798 + +0.5
385,814 + -0.5
385,866 - -0.1
385,878 + +2.0
385,923 + +0.9
385,953 + CCNA_00369 0.10 +0.6
385,957 + CCNA_00369 0.11 +1.3
385,960 - CCNA_00369 0.11 +0.8
385,966 - CCNA_00369 0.11 +0.1
385,995 - CCNA_00369 0.14 +2.1
386,010 + CCNA_00369 0.15 +1.5
386,013 - CCNA_00369 0.15 +1.7
386,094 + CCNA_00369 0.21 +1.0
386,112 + CCNA_00369 0.22 -0.7
386,112 - CCNA_00369 0.22 -0.4
386,112 - CCNA_00369 0.22 +0.9
386,147 + CCNA_00369 0.25 +1.5
386,147 + CCNA_00369 0.25 +0.9
386,155 - CCNA_00369 0.26 +0.4
386,156 - CCNA_00369 0.26 +0.8
386,159 + CCNA_00369 0.26 +1.6
386,168 + CCNA_00369 0.27 +1.4
386,171 - CCNA_00369 0.27 +0.6
386,198 + CCNA_00369 0.29 +1.1
386,211 - CCNA_00369 0.30 +0.7
386,242 - CCNA_00369 0.32 +0.4
386,247 - CCNA_00369 0.33 +2.0
386,247 - CCNA_00369 0.33 +1.2
386,261 + CCNA_00369 0.34 +1.2
386,274 + CCNA_00369 0.35 +1.1
386,280 - CCNA_00369 0.35 +0.3
386,284 + CCNA_00369 0.36 +1.7
386,298 - CCNA_00369 0.37 +0.9
386,325 + CCNA_00369 0.39 +2.6
386,333 - CCNA_00369 0.39 +1.3
386,333 - CCNA_00369 0.39 +2.0
386,352 + CCNA_00369 0.41 +1.0
386,362 + CCNA_00369 0.41 +0.7
386,362 + CCNA_00369 0.41 +1.1
386,362 + CCNA_00369 0.41 +0.8
386,370 - CCNA_00369 0.42 -0.6
386,394 - CCNA_00369 0.44 +0.4
386,396 + CCNA_00369 0.44 +1.4
386,404 - CCNA_00369 0.45 +0.2
386,406 + CCNA_00369 0.45 +1.5
386,527 + CCNA_00369 0.54 +2.4
386,562 - CCNA_00369 0.57 +0.1
386,608 + CCNA_00369 0.60 +0.9
386,616 - CCNA_00369 0.61 +1.3
386,642 + CCNA_00369 0.63 +1.5

Or see this region's nucleotide sequence