Strain Fitness in Caulobacter crescentus NA1000 around CCNA_00318

Experiment: a-Cyclodextrin (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_00317 and CCNA_00318 are separated by 207 nucleotidesCCNA_00318 and CCNA_00319 are separated by 85 nucleotidesCCNA_00319 and CCNA_00320 are separated by 182 nucleotides CCNA_00317: CCNA_00317 - GTP-binding protein CgtA, at 331,907 to 332,971 _00317 CCNA_00318: CCNA_00318 - hypothetical protein, at 333,179 to 334,138 _00318 CCNA_00319: CCNA_00319 - acetyltransferase, GNAT family, at 334,224 to 334,757 _00319 CCNA_00320: CCNA_00320 - LSU ribosomal protein L27P, at 334,940 to 335,209 _00320 Position (kb) 333 334 335Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5at 333.016 kb on - strandat 333.036 kb on - strandat 333.037 kb on - strandat 333.056 kb on - strandat 333.066 kb on - strandat 333.081 kb on + strandat 333.232 kb on + strandat 333.256 kb on + strandat 333.264 kb on - strandat 333.268 kb on + strandat 333.364 kb on - strand, within CCNA_00318at 333.377 kb on - strand, within CCNA_00318at 333.381 kb on + strand, within CCNA_00318at 333.396 kb on + strand, within CCNA_00318at 333.416 kb on + strand, within CCNA_00318at 333.419 kb on - strand, within CCNA_00318at 333.419 kb on - strand, within CCNA_00318at 333.419 kb on - strand, within CCNA_00318at 333.419 kb on - strand, within CCNA_00318at 333.419 kb on - strand, within CCNA_00318at 333.424 kb on - strand, within CCNA_00318at 333.444 kb on + strand, within CCNA_00318at 333.456 kb on + strand, within CCNA_00318at 333.464 kb on - strand, within CCNA_00318at 333.481 kb on + strand, within CCNA_00318at 333.515 kb on + strand, within CCNA_00318at 333.523 kb on - strand, within CCNA_00318at 333.652 kb on + strand, within CCNA_00318at 333.652 kb on + strand, within CCNA_00318at 333.652 kb on + strand, within CCNA_00318at 333.652 kb on + strand, within CCNA_00318at 333.652 kb on + strand, within CCNA_00318at 333.652 kb on + strand, within CCNA_00318at 333.652 kb on + strand, within CCNA_00318at 333.660 kb on - strand, within CCNA_00318at 333.660 kb on - strand, within CCNA_00318at 333.660 kb on - strand, within CCNA_00318at 333.660 kb on - strand, within CCNA_00318at 333.660 kb on - strand, within CCNA_00318at 333.660 kb on - strand, within CCNA_00318at 333.660 kb on - strand, within CCNA_00318at 333.660 kb on - strand, within CCNA_00318at 333.660 kb on - strand, within CCNA_00318at 333.660 kb on - strand, within CCNA_00318at 333.660 kb on - strand, within CCNA_00318at 333.660 kb on - strand, within CCNA_00318at 333.660 kb on - strand, within CCNA_00318at 333.660 kb on - strand, within CCNA_00318at 333.660 kb on - strand, within CCNA_00318at 333.689 kb on + strand, within CCNA_00318at 333.689 kb on - strand, within CCNA_00318at 333.691 kb on + strand, within CCNA_00318at 333.691 kb on + strand, within CCNA_00318at 333.691 kb on + strand, within CCNA_00318at 333.699 kb on - strand, within CCNA_00318at 333.699 kb on - strand, within CCNA_00318at 333.755 kb on - strand, within CCNA_00318at 333.775 kb on - strand, within CCNA_00318at 333.841 kb on - strand, within CCNA_00318at 333.858 kb on - strand, within CCNA_00318at 333.859 kb on - strand, within CCNA_00318at 333.878 kb on - strand, within CCNA_00318at 333.924 kb on - strand, within CCNA_00318at 333.967 kb on + strand, within CCNA_00318at 333.967 kb on - strand, within CCNA_00318at 333.978 kb on + strand, within CCNA_00318at 334.016 kb on - strand, within CCNA_00318at 334.029 kb on + strand, within CCNA_00318at 334.056 kb on + strandat 334.056 kb on + strandat 334.056 kb on + strandat 334.056 kb on + strandat 334.077 kb on - strandat 334.100 kb on + strandat 334.122 kb on - strandat 334.131 kb on - strandat 334.133 kb on + strandat 334.133 kb on + strandat 334.141 kb on - strandat 334.159 kb on - strandat 334.201 kb on + strandat 334.209 kb on - strandat 334.221 kb on - strandat 334.295 kb on + strand, within CCNA_00319at 334.303 kb on - strand, within CCNA_00319at 334.305 kb on - strand, within CCNA_00319at 334.305 kb on - strand, within CCNA_00319at 334.309 kb on + strand, within CCNA_00319at 334.310 kb on + strand, within CCNA_00319at 334.340 kb on - strand, within CCNA_00319at 334.340 kb on - strand, within CCNA_00319at 334.376 kb on + strand, within CCNA_00319at 334.386 kb on + strand, within CCNA_00319at 334.401 kb on + strand, within CCNA_00319at 334.421 kb on + strand, within CCNA_00319at 334.434 kb on + strand, within CCNA_00319at 334.434 kb on + strand, within CCNA_00319at 334.454 kb on - strand, within CCNA_00319at 334.523 kb on - strand, within CCNA_00319at 334.559 kb on - strand, within CCNA_00319at 334.561 kb on + strand, within CCNA_00319at 334.566 kb on + strand, within CCNA_00319at 334.585 kb on + strand, within CCNA_00319at 334.595 kb on + strand, within CCNA_00319at 334.631 kb on - strand, within CCNA_00319at 334.692 kb on - strand, within CCNA_00319at 334.698 kb on - strand, within CCNA_00319at 334.717 kb on - strandat 334.755 kb on + strandat 334.770 kb on + strandat 334.771 kb on - strandat 334.821 kb on - strandat 334.903 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction a-Cyclodextrin (C)
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333,016 - -1.7
333,036 - -2.7
333,037 - -1.1
333,056 - +0.7
333,066 - -1.1
333,081 + -3.1
333,232 + +0.3
333,256 + +0.4
333,264 - -1.1
333,268 + +0.6
333,364 - CCNA_00318 0.19 +0.5
333,377 - CCNA_00318 0.21 -0.9
333,381 + CCNA_00318 0.21 -1.7
333,396 + CCNA_00318 0.23 +1.2
333,416 + CCNA_00318 0.25 -0.1
333,419 - CCNA_00318 0.25 -2.6
333,419 - CCNA_00318 0.25 -1.3
333,419 - CCNA_00318 0.25 -0.9
333,419 - CCNA_00318 0.25 -0.3
333,419 - CCNA_00318 0.25 -1.0
333,424 - CCNA_00318 0.26 +1.7
333,444 + CCNA_00318 0.28 +0.1
333,456 + CCNA_00318 0.29 -1.5
333,464 - CCNA_00318 0.30 -0.3
333,481 + CCNA_00318 0.31 -1.6
333,515 + CCNA_00318 0.35 -0.4
333,523 - CCNA_00318 0.36 -1.4
333,652 + CCNA_00318 0.49 +0.8
333,652 + CCNA_00318 0.49 +1.4
333,652 + CCNA_00318 0.49 -0.3
333,652 + CCNA_00318 0.49 -2.1
333,652 + CCNA_00318 0.49 -2.1
333,652 + CCNA_00318 0.49 -1.1
333,652 + CCNA_00318 0.49 +0.4
333,660 - CCNA_00318 0.50 -2.0
333,660 - CCNA_00318 0.50 -1.3
333,660 - CCNA_00318 0.50 -0.7
333,660 - CCNA_00318 0.50 -0.9
333,660 - CCNA_00318 0.50 +1.1
333,660 - CCNA_00318 0.50 +0.3
333,660 - CCNA_00318 0.50 -1.2
333,660 - CCNA_00318 0.50 +0.1
333,660 - CCNA_00318 0.50 +0.4
333,660 - CCNA_00318 0.50 +0.4
333,660 - CCNA_00318 0.50 -1.0
333,660 - CCNA_00318 0.50 -0.4
333,660 - CCNA_00318 0.50 +2.4
333,660 - CCNA_00318 0.50 +0.7
333,660 - CCNA_00318 0.50 +1.1
333,689 + CCNA_00318 0.53 -1.4
333,689 - CCNA_00318 0.53 +2.0
333,691 + CCNA_00318 0.53 +0.1
333,691 + CCNA_00318 0.53 +0.4
333,691 + CCNA_00318 0.53 -2.4
333,699 - CCNA_00318 0.54 +2.7
333,699 - CCNA_00318 0.54 -2.3
333,755 - CCNA_00318 0.60 +0.0
333,775 - CCNA_00318 0.62 +1.0
333,841 - CCNA_00318 0.69 -1.5
333,858 - CCNA_00318 0.71 +1.0
333,859 - CCNA_00318 0.71 +0.5
333,878 - CCNA_00318 0.73 +0.6
333,924 - CCNA_00318 0.78 -1.7
333,967 + CCNA_00318 0.82 -0.4
333,967 - CCNA_00318 0.82 -0.9
333,978 + CCNA_00318 0.83 +0.8
334,016 - CCNA_00318 0.87 +0.1
334,029 + CCNA_00318 0.89 -0.5
334,056 + +2.1
334,056 + +1.6
334,056 + +1.3
334,056 + +1.6
334,077 - +1.1
334,100 + +0.5
334,122 - +2.1
334,131 - +0.4
334,133 + -0.0
334,133 + +1.7
334,141 - +2.1
334,159 - +0.6
334,201 + +0.8
334,209 - +1.0
334,221 - +2.0
334,295 + CCNA_00319 0.13 -1.3
334,303 - CCNA_00319 0.15 +2.6
334,305 - CCNA_00319 0.15 +0.2
334,305 - CCNA_00319 0.15 +1.2
334,309 + CCNA_00319 0.16 -0.4
334,310 + CCNA_00319 0.16 -0.1
334,340 - CCNA_00319 0.22 +1.4
334,340 - CCNA_00319 0.22 +1.0
334,376 + CCNA_00319 0.28 +2.1
334,386 + CCNA_00319 0.30 -0.2
334,401 + CCNA_00319 0.33 -1.9
334,421 + CCNA_00319 0.37 +0.6
334,434 + CCNA_00319 0.39 -0.1
334,434 + CCNA_00319 0.39 +1.6
334,454 - CCNA_00319 0.43 +2.1
334,523 - CCNA_00319 0.56 +3.7
334,559 - CCNA_00319 0.63 +2.2
334,561 + CCNA_00319 0.63 -0.7
334,566 + CCNA_00319 0.64 +0.4
334,585 + CCNA_00319 0.68 -2.0
334,595 + CCNA_00319 0.69 -0.2
334,631 - CCNA_00319 0.76 +1.8
334,692 - CCNA_00319 0.88 +1.3
334,698 - CCNA_00319 0.89 +1.4
334,717 - +5.1
334,755 + +0.6
334,770 + -0.2
334,771 - +2.3
334,821 - +2.2
334,903 - +3.3

Or see this region's nucleotide sequence