Strain Fitness in Caulobacter crescentus NA1000 around CCNA_00315

Experiment: a-Cyclodextrin (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_00313 and CCNA_00314 are separated by 42 nucleotidesCCNA_00314 and CCNA_00315 are separated by 25 nucleotidesCCNA_00315 and CCNA_00316 are separated by 23 nucleotides CCNA_00313: CCNA_00313 - peptidase, M14 family, at 326,715 to 328,544 _00313 CCNA_00314: CCNA_00314 - hypothetical protein, at 328,587 to 329,198 _00314 CCNA_00315: CCNA_00315 - 3-polyprenyl-4-hydroxybenzoate decarboxylase, at 329,224 to 330,753 _00315 CCNA_00316: CCNA_00316 - glutamate 5-kinase, at 330,777 to 331,910 _00316 Position (kb) 329 330 331Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2 3 4at 328.225 kb on - strand, within CCNA_00313at 328.225 kb on - strand, within CCNA_00313at 328.281 kb on + strand, within CCNA_00313at 328.289 kb on - strand, within CCNA_00313at 328.289 kb on - strand, within CCNA_00313at 328.294 kb on + strand, within CCNA_00313at 328.296 kb on - strand, within CCNA_00313at 328.302 kb on - strand, within CCNA_00313at 328.302 kb on - strand, within CCNA_00313at 328.315 kb on - strand, within CCNA_00313at 328.330 kb on + strand, within CCNA_00313at 328.363 kb on + strandat 328.363 kb on + strandat 328.371 kb on - strandat 328.409 kb on - strandat 328.414 kb on - strandat 328.465 kb on + strandat 328.473 kb on - strandat 328.479 kb on + strandat 328.479 kb on + strandat 328.479 kb on + strandat 328.479 kb on + strandat 328.483 kb on - strandat 328.487 kb on - strandat 328.487 kb on - strandat 328.487 kb on - strandat 328.546 kb on + strandat 328.568 kb on - strandat 328.570 kb on - strandat 328.601 kb on + strandat 328.609 kb on - strandat 328.618 kb on - strandat 328.623 kb on - strandat 328.688 kb on + strand, within CCNA_00314at 328.688 kb on + strand, within CCNA_00314at 328.743 kb on + strand, within CCNA_00314at 328.750 kb on - strand, within CCNA_00314at 328.753 kb on + strand, within CCNA_00314at 328.753 kb on + strand, within CCNA_00314at 328.753 kb on + strand, within CCNA_00314at 328.753 kb on + strand, within CCNA_00314at 328.758 kb on + strand, within CCNA_00314at 328.765 kb on + strand, within CCNA_00314at 328.773 kb on - strand, within CCNA_00314at 328.859 kb on + strand, within CCNA_00314at 328.926 kb on + strand, within CCNA_00314at 328.934 kb on - strand, within CCNA_00314at 328.954 kb on - strand, within CCNA_00314at 328.959 kb on - strand, within CCNA_00314at 328.961 kb on + strand, within CCNA_00314at 328.961 kb on + strand, within CCNA_00314at 328.969 kb on - strand, within CCNA_00314at 328.992 kb on + strand, within CCNA_00314at 328.992 kb on + strand, within CCNA_00314at 328.997 kb on + strand, within CCNA_00314at 328.997 kb on - strand, within CCNA_00314at 329.002 kb on + strand, within CCNA_00314at 329.003 kb on + strand, within CCNA_00314at 329.010 kb on - strand, within CCNA_00314at 329.010 kb on - strand, within CCNA_00314at 329.014 kb on + strand, within CCNA_00314at 329.019 kb on + strand, within CCNA_00314at 329.027 kb on - strand, within CCNA_00314at 329.050 kb on + strand, within CCNA_00314at 329.071 kb on + strand, within CCNA_00314at 329.074 kb on - strand, within CCNA_00314at 329.079 kb on - strand, within CCNA_00314at 329.094 kb on - strand, within CCNA_00314at 329.094 kb on - strand, within CCNA_00314at 329.096 kb on + strand, within CCNA_00314at 329.096 kb on + strand, within CCNA_00314at 329.104 kb on - strand, within CCNA_00314at 329.157 kb on - strandat 329.217 kb on + strandat 329.226 kb on - strandat 330.782 kb on - strandat 330.782 kb on - strandat 330.810 kb on - strandat 330.821 kb on + strandat 330.853 kb on + strandat 330.861 kb on - strandat 330.861 kb on - strandat 330.877 kb on + strandat 330.886 kb on - strandat 330.888 kb on + strandat 330.896 kb on - strand, within CCNA_00316at 330.896 kb on - strand, within CCNA_00316at 330.954 kb on - strand, within CCNA_00316at 331.016 kb on - strand, within CCNA_00316at 331.050 kb on + strand, within CCNA_00316at 331.050 kb on + strand, within CCNA_00316at 331.053 kb on - strand, within CCNA_00316at 331.053 kb on - strand, within CCNA_00316at 331.058 kb on - strand, within CCNA_00316at 331.058 kb on - strand, within CCNA_00316at 331.075 kb on + strand, within CCNA_00316at 331.081 kb on + strand, within CCNA_00316at 331.129 kb on - strand, within CCNA_00316at 331.177 kb on - strand, within CCNA_00316at 331.177 kb on - strand, within CCNA_00316at 331.182 kb on - strand, within CCNA_00316at 331.187 kb on - strand, within CCNA_00316at 331.187 kb on - strand, within CCNA_00316at 331.192 kb on - strand, within CCNA_00316at 331.192 kb on - strand, within CCNA_00316at 331.272 kb on - strand, within CCNA_00316at 331.330 kb on + strand, within CCNA_00316at 331.331 kb on - strand, within CCNA_00316at 331.338 kb on - strand, within CCNA_00316at 331.338 kb on - strand, within CCNA_00316at 331.357 kb on + strand, within CCNA_00316at 331.357 kb on + strand, within CCNA_00316at 331.362 kb on - strand, within CCNA_00316at 331.365 kb on - strand, within CCNA_00316at 331.374 kb on + strand, within CCNA_00316at 331.466 kb on + strand, within CCNA_00316at 331.509 kb on + strand, within CCNA_00316at 331.523 kb on - strand, within CCNA_00316at 331.523 kb on - strand, within CCNA_00316at 331.572 kb on + strand, within CCNA_00316at 331.572 kb on + strand, within CCNA_00316at 331.575 kb on - strand, within CCNA_00316at 331.581 kb on + strand, within CCNA_00316at 331.581 kb on + strand, within CCNA_00316at 331.581 kb on + strand, within CCNA_00316at 331.589 kb on - strand, within CCNA_00316at 331.592 kb on + strand, within CCNA_00316at 331.627 kb on + strand, within CCNA_00316at 331.640 kb on - strand, within CCNA_00316at 331.641 kb on + strand, within CCNA_00316at 331.641 kb on + strand, within CCNA_00316at 331.641 kb on + strand, within CCNA_00316at 331.641 kb on + strand, within CCNA_00316at 331.641 kb on + strand, within CCNA_00316at 331.641 kb on + strand, within CCNA_00316at 331.641 kb on + strand, within CCNA_00316at 331.644 kb on - strand, within CCNA_00316at 331.649 kb on - strand, within CCNA_00316at 331.649 kb on - strand, within CCNA_00316at 331.649 kb on - strand, within CCNA_00316at 331.649 kb on - strand, within CCNA_00316at 331.649 kb on - strand, within CCNA_00316at 331.649 kb on - strand, within CCNA_00316at 331.687 kb on - strand, within CCNA_00316at 331.694 kb on - strand, within CCNA_00316at 331.700 kb on + strand, within CCNA_00316at 331.700 kb on + strand, within CCNA_00316at 331.703 kb on - strand, within CCNA_00316at 331.708 kb on - strand, within CCNA_00316at 331.708 kb on - strand, within CCNA_00316

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Per-strain Table

Position Strand Gene LocusTag Fraction a-Cyclodextrin (C)
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328,225 - CCNA_00313 0.83 +2.1
328,225 - CCNA_00313 0.83 -0.6
328,281 + CCNA_00313 0.86 -0.6
328,289 - CCNA_00313 0.86 -1.5
328,289 - CCNA_00313 0.86 +0.7
328,294 + CCNA_00313 0.86 -1.4
328,296 - CCNA_00313 0.86 +2.3
328,302 - CCNA_00313 0.87 +0.1
328,302 - CCNA_00313 0.87 +1.3
328,315 - CCNA_00313 0.87 -1.9
328,330 + CCNA_00313 0.88 -0.6
328,363 + -1.5
328,363 + -2.2
328,371 - -2.3
328,409 - -0.5
328,414 - +0.8
328,465 + -1.0
328,473 - -0.2
328,479 + -0.2
328,479 + -2.1
328,479 + +1.7
328,479 + +1.8
328,483 - -1.7
328,487 - +1.0
328,487 - -0.5
328,487 - +0.8
328,546 + -0.1
328,568 - -0.3
328,570 - +1.8
328,601 + -1.7
328,609 - -0.7
328,618 - -0.0
328,623 - +1.1
328,688 + CCNA_00314 0.17 -1.6
328,688 + CCNA_00314 0.17 -0.6
328,743 + CCNA_00314 0.25 +0.4
328,750 - CCNA_00314 0.27 +0.7
328,753 + CCNA_00314 0.27 +0.7
328,753 + CCNA_00314 0.27 +0.0
328,753 + CCNA_00314 0.27 -0.3
328,753 + CCNA_00314 0.27 -2.8
328,758 + CCNA_00314 0.28 -0.3
328,765 + CCNA_00314 0.29 -0.9
328,773 - CCNA_00314 0.30 +1.6
328,859 + CCNA_00314 0.44 -2.0
328,926 + CCNA_00314 0.55 -3.0
328,934 - CCNA_00314 0.57 -0.9
328,954 - CCNA_00314 0.60 -0.3
328,959 - CCNA_00314 0.61 +0.7
328,961 + CCNA_00314 0.61 -1.0
328,961 + CCNA_00314 0.61 +1.7
328,969 - CCNA_00314 0.62 -1.3
328,992 + CCNA_00314 0.66 -1.1
328,992 + CCNA_00314 0.66 -1.9
328,997 + CCNA_00314 0.67 +1.1
328,997 - CCNA_00314 0.67 -0.7
329,002 + CCNA_00314 0.68 -2.6
329,003 + CCNA_00314 0.68 -0.6
329,010 - CCNA_00314 0.69 -0.7
329,010 - CCNA_00314 0.69 +0.5
329,014 + CCNA_00314 0.70 -1.3
329,019 + CCNA_00314 0.71 -3.6
329,027 - CCNA_00314 0.72 +0.2
329,050 + CCNA_00314 0.76 -1.5
329,071 + CCNA_00314 0.79 -1.2
329,074 - CCNA_00314 0.80 -1.7
329,079 - CCNA_00314 0.80 +0.5
329,094 - CCNA_00314 0.83 +0.6
329,094 - CCNA_00314 0.83 +1.5
329,096 + CCNA_00314 0.83 +4.2
329,096 + CCNA_00314 0.83 +2.1
329,104 - CCNA_00314 0.84 +4.6
329,157 - +1.0
329,217 + -0.9
329,226 - +1.0
330,782 - +0.3
330,782 - +0.7
330,810 - -1.7
330,821 + +1.1
330,853 + -2.5
330,861 - -3.9
330,861 - -1.7
330,877 + -2.8
330,886 - -2.4
330,888 + -2.0
330,896 - CCNA_00316 0.10 -1.3
330,896 - CCNA_00316 0.10 -3.7
330,954 - CCNA_00316 0.16 +0.1
331,016 - CCNA_00316 0.21 -1.6
331,050 + CCNA_00316 0.24 -2.0
331,050 + CCNA_00316 0.24 -3.1
331,053 - CCNA_00316 0.24 -3.2
331,053 - CCNA_00316 0.24 -2.4
331,058 - CCNA_00316 0.25 -3.9
331,058 - CCNA_00316 0.25 -2.7
331,075 + CCNA_00316 0.26 -1.7
331,081 + CCNA_00316 0.27 -1.9
331,129 - CCNA_00316 0.31 -2.2
331,177 - CCNA_00316 0.35 -4.6
331,177 - CCNA_00316 0.35 -3.6
331,182 - CCNA_00316 0.36 -3.9
331,187 - CCNA_00316 0.36 -1.6
331,187 - CCNA_00316 0.36 -3.1
331,192 - CCNA_00316 0.37 -0.5
331,192 - CCNA_00316 0.37 -3.4
331,272 - CCNA_00316 0.44 -3.1
331,330 + CCNA_00316 0.49 -2.7
331,331 - CCNA_00316 0.49 -1.8
331,338 - CCNA_00316 0.49 +0.4
331,338 - CCNA_00316 0.49 -3.0
331,357 + CCNA_00316 0.51 -2.6
331,357 + CCNA_00316 0.51 -1.3
331,362 - CCNA_00316 0.52 -2.5
331,365 - CCNA_00316 0.52 -4.8
331,374 + CCNA_00316 0.53 -3.0
331,466 + CCNA_00316 0.61 -2.0
331,509 + CCNA_00316 0.65 -1.9
331,523 - CCNA_00316 0.66 -1.6
331,523 - CCNA_00316 0.66 -3.8
331,572 + CCNA_00316 0.70 -2.0
331,572 + CCNA_00316 0.70 -2.4
331,575 - CCNA_00316 0.70 -2.1
331,581 + CCNA_00316 0.71 -3.6
331,581 + CCNA_00316 0.71 -3.3
331,581 + CCNA_00316 0.71 -2.0
331,589 - CCNA_00316 0.72 -1.8
331,592 + CCNA_00316 0.72 -2.0
331,627 + CCNA_00316 0.75 -2.8
331,640 - CCNA_00316 0.76 -2.6
331,641 + CCNA_00316 0.76 -2.8
331,641 + CCNA_00316 0.76 -3.1
331,641 + CCNA_00316 0.76 -2.0
331,641 + CCNA_00316 0.76 -0.7
331,641 + CCNA_00316 0.76 -4.0
331,641 + CCNA_00316 0.76 -2.2
331,641 + CCNA_00316 0.76 -2.5
331,644 - CCNA_00316 0.76 -3.2
331,649 - CCNA_00316 0.77 -1.8
331,649 - CCNA_00316 0.77 -3.2
331,649 - CCNA_00316 0.77 -3.4
331,649 - CCNA_00316 0.77 -1.5
331,649 - CCNA_00316 0.77 -3.2
331,649 - CCNA_00316 0.77 -3.1
331,687 - CCNA_00316 0.80 -2.9
331,694 - CCNA_00316 0.81 -1.3
331,700 + CCNA_00316 0.81 -3.5
331,700 + CCNA_00316 0.81 -1.2
331,703 - CCNA_00316 0.82 -1.7
331,708 - CCNA_00316 0.82 -2.8
331,708 - CCNA_00316 0.82 -2.1

Or see this region's nucleotide sequence