Experiment: a-Cyclodextrin (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_00147 and CCNA_00148 are separated by 75 nucleotides CCNA_00148 and CCNA_00149 are separated by 16 nucleotides CCNA_00149 and CCNA_00150 overlap by 4 nucleotides CCNA_00150 and CCNA_00151 are separated by 166 nucleotides
CCNA_00147: CCNA_00147 - hypothetical protein, at 158,354 to 158,470
_00147
CCNA_00148: CCNA_00148 - hypothetical protein, at 158,546 to 159,079
_00148
CCNA_00149: CCNA_00149 - Cro/CI-family transcriptional regulator, at 159,096 to 159,323
_00149
CCNA_00150: CCNA_00150 - PDZ domain family protein, at 159,320 to 160,297
_00150
CCNA_00151: CCNA_00151 - ribonuclease PH, at 160,464 to 161,180
_00151
Position (kb) 159
160
161 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 158.334 kb on + strand at 158.366 kb on + strand, within CCNA_00147 at 158.434 kb on + strand, within CCNA_00147 at 158.463 kb on + strand at 158.463 kb on + strand at 158.464 kb on - strand at 158.465 kb on + strand at 158.465 kb on + strand at 158.465 kb on + strand at 158.465 kb on + strand at 158.471 kb on - strand at 158.471 kb on - strand at 158.492 kb on - strand at 158.492 kb on - strand at 158.517 kb on + strand at 158.532 kb on + strand at 158.553 kb on + strand at 158.553 kb on + strand at 158.553 kb on + strand at 158.602 kb on + strand, within CCNA_00148 at 158.620 kb on - strand, within CCNA_00148 at 158.652 kb on - strand, within CCNA_00148 at 158.668 kb on - strand, within CCNA_00148 at 158.670 kb on + strand, within CCNA_00148 at 158.670 kb on - strand, within CCNA_00148 at 158.673 kb on - strand, within CCNA_00148 at 158.707 kb on + strand, within CCNA_00148 at 158.738 kb on + strand, within CCNA_00148 at 158.764 kb on + strand, within CCNA_00148 at 158.772 kb on - strand, within CCNA_00148 at 158.774 kb on + strand, within CCNA_00148 at 158.813 kb on + strand, within CCNA_00148 at 158.819 kb on + strand, within CCNA_00148 at 158.889 kb on - strand, within CCNA_00148 at 158.901 kb on + strand, within CCNA_00148 at 158.956 kb on + strand, within CCNA_00148 at 158.957 kb on + strand, within CCNA_00148 at 158.964 kb on - strand, within CCNA_00148 at 158.982 kb on - strand, within CCNA_00148 at 159.076 kb on - strand at 159.078 kb on + strand at 159.078 kb on + strand at 159.111 kb on + strand at 159.119 kb on - strand, within CCNA_00149 at 159.124 kb on + strand, within CCNA_00149 at 159.132 kb on - strand, within CCNA_00149 at 159.166 kb on - strand, within CCNA_00149 at 159.188 kb on + strand, within CCNA_00149 at 159.196 kb on - strand, within CCNA_00149 at 159.203 kb on - strand, within CCNA_00149 at 159.227 kb on + strand, within CCNA_00149 at 159.227 kb on + strand, within CCNA_00149 at 159.227 kb on + strand, within CCNA_00149 at 159.230 kb on - strand, within CCNA_00149 at 159.266 kb on - strand, within CCNA_00149 at 159.279 kb on + strand, within CCNA_00149 at 159.345 kb on + strand at 159.346 kb on + strand at 159.346 kb on + strand at 159.354 kb on - strand at 159.354 kb on - strand at 159.370 kb on + strand at 159.391 kb on - strand at 159.402 kb on + strand at 159.520 kb on - strand, within CCNA_00150 at 159.531 kb on + strand, within CCNA_00150 at 159.536 kb on + strand, within CCNA_00150 at 159.613 kb on + strand, within CCNA_00150 at 159.613 kb on + strand, within CCNA_00150 at 159.619 kb on + strand, within CCNA_00150 at 159.621 kb on - strand, within CCNA_00150 at 159.651 kb on + strand, within CCNA_00150 at 159.683 kb on - strand, within CCNA_00150 at 159.721 kb on - strand, within CCNA_00150 at 159.756 kb on + strand, within CCNA_00150 at 159.758 kb on - strand, within CCNA_00150 at 159.761 kb on + strand, within CCNA_00150 at 159.769 kb on - strand, within CCNA_00150 at 159.769 kb on - strand, within CCNA_00150 at 159.769 kb on - strand, within CCNA_00150 at 159.769 kb on - strand, within CCNA_00150 at 159.776 kb on + strand, within CCNA_00150 at 159.809 kb on - strand, within CCNA_00150 at 159.821 kb on + strand, within CCNA_00150 at 159.874 kb on - strand, within CCNA_00150 at 159.978 kb on + strand, within CCNA_00150 at 159.990 kb on - strand, within CCNA_00150 at 159.995 kb on + strand, within CCNA_00150 at 160.013 kb on + strand, within CCNA_00150 at 160.018 kb on + strand, within CCNA_00150 at 160.026 kb on - strand, within CCNA_00150 at 160.026 kb on - strand, within CCNA_00150 at 160.056 kb on + strand, within CCNA_00150 at 160.116 kb on - strand, within CCNA_00150 at 160.121 kb on - strand, within CCNA_00150 at 160.154 kb on - strand at 160.172 kb on - strand, within CCNA_00150 at 160.172 kb on - strand, within CCNA_00150 at 160.176 kb on + strand, within CCNA_00150 at 160.190 kb on - strand, within CCNA_00150 at 160.203 kb on + strand at 160.211 kb on - strand at 160.215 kb on + strand at 160.220 kb on + strand at 160.238 kb on + strand at 160.241 kb on - strand at 160.246 kb on - strand at 160.259 kb on - strand at 160.300 kb on - strand at 160.304 kb on + strand at 160.304 kb on + strand at 160.304 kb on + strand at 160.304 kb on + strand at 160.305 kb on - strand at 160.312 kb on - strand at 160.312 kb on - strand at 160.314 kb on - strand at 160.314 kb on - strand at 160.329 kb on + strand at 160.337 kb on - strand at 160.396 kb on - strand at 160.405 kb on + strand at 160.406 kb on - strand at 160.406 kb on - strand at 160.413 kb on + strand at 160.426 kb on + strand at 160.455 kb on + strand at 160.455 kb on + strand at 160.455 kb on + strand at 160.456 kb on + strand at 160.463 kb on - strand at 160.463 kb on - strand at 160.463 kb on - strand at 160.463 kb on - strand at 160.463 kb on - strand at 160.480 kb on + strand at 160.511 kb on - strand at 160.520 kb on - strand at 160.571 kb on - strand, within CCNA_00151 at 160.571 kb on - strand, within CCNA_00151 at 160.605 kb on + strand, within CCNA_00151 at 160.641 kb on - strand, within CCNA_00151 at 160.646 kb on - strand, within CCNA_00151 at 160.675 kb on + strand, within CCNA_00151 at 160.675 kb on + strand, within CCNA_00151 at 160.675 kb on + strand, within CCNA_00151 at 160.683 kb on - strand, within CCNA_00151 at 160.683 kb on - strand, within CCNA_00151 at 160.683 kb on - strand, within CCNA_00151 at 160.683 kb on - strand, within CCNA_00151 at 160.683 kb on - strand, within CCNA_00151 at 160.683 kb on - strand, within CCNA_00151 at 160.683 kb on - strand, within CCNA_00151 at 160.699 kb on + strand, within CCNA_00151 at 160.726 kb on + strand, within CCNA_00151 at 160.734 kb on - strand, within CCNA_00151 at 160.755 kb on - strand, within CCNA_00151 at 160.761 kb on + strand at 160.774 kb on - strand, within CCNA_00151 at 160.780 kb on - strand, within CCNA_00151 at 160.796 kb on - strand, within CCNA_00151 at 160.848 kb on - strand, within CCNA_00151 at 160.864 kb on + strand, within CCNA_00151 at 160.873 kb on - strand, within CCNA_00151 at 160.940 kb on - strand, within CCNA_00151 at 160.989 kb on + strand, within CCNA_00151 at 160.999 kb on + strand, within CCNA_00151 at 160.999 kb on + strand, within CCNA_00151 at 161.002 kb on - strand, within CCNA_00151 at 161.007 kb on - strand, within CCNA_00151 at 161.025 kb on - strand, within CCNA_00151 at 161.046 kb on + strand, within CCNA_00151 at 161.054 kb on - strand, within CCNA_00151 at 161.054 kb on - strand, within CCNA_00151 at 161.067 kb on - strand, within CCNA_00151 at 161.072 kb on - strand, within CCNA_00151 at 161.079 kb on - strand, within CCNA_00151 at 161.089 kb on - strand, within CCNA_00151 at 161.104 kb on - strand, within CCNA_00151 at 161.106 kb on - strand, within CCNA_00151 at 161.135 kb on - strand at 161.135 kb on - strand at 161.143 kb on + strand at 161.143 kb on + strand at 161.151 kb on - strand at 161.151 kb on - strand at 161.161 kb on - strand at 161.187 kb on + strand at 161.187 kb on + strand at 161.195 kb on - strand at 161.205 kb on + strand at 161.221 kb on - strand at 161.221 kb on - strand at 161.221 kb on - strand at 161.244 kb on - strand at 161.277 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction a-Cyclodextrin (C) remove 158,334 + +2.3 158,366 + CCNA_00147 0.10 +2.3 158,434 + CCNA_00147 0.68 +2.3 158,463 + +2.1 158,463 + +1.6 158,464 - -1.9 158,465 + +2.0 158,465 + +2.0 158,465 + +2.3 158,465 + +1.9 158,471 - -0.9 158,471 - -1.4 158,492 - -2.3 158,492 - -0.0 158,517 + +2.0 158,532 + +2.2 158,553 + +1.6 158,553 + +2.0 158,553 + +2.1 158,602 + CCNA_00148 0.10 +2.7 158,620 - CCNA_00148 0.14 +0.0 158,652 - CCNA_00148 0.20 -1.3 158,668 - CCNA_00148 0.23 +1.3 158,670 + CCNA_00148 0.23 +2.7 158,670 - CCNA_00148 0.23 +0.7 158,673 - CCNA_00148 0.24 -2.0 158,707 + CCNA_00148 0.30 +1.3 158,738 + CCNA_00148 0.36 +1.8 158,764 + CCNA_00148 0.41 +1.9 158,772 - CCNA_00148 0.42 -1.0 158,774 + CCNA_00148 0.43 +2.4 158,813 + CCNA_00148 0.50 +1.4 158,819 + CCNA_00148 0.51 +0.7 158,889 - CCNA_00148 0.64 -2.0 158,901 + CCNA_00148 0.66 +1.6 158,956 + CCNA_00148 0.77 +0.3 158,957 + CCNA_00148 0.77 +2.2 158,964 - CCNA_00148 0.78 -1.0 158,982 - CCNA_00148 0.82 -1.6 159,076 - -0.4 159,078 + +3.0 159,078 + +2.7 159,111 + +4.3 159,119 - CCNA_00149 0.10 -2.4 159,124 + CCNA_00149 0.12 +2.9 159,132 - CCNA_00149 0.16 +0.2 159,166 - CCNA_00149 0.31 -3.6 159,188 + CCNA_00149 0.40 +3.3 159,196 - CCNA_00149 0.44 -1.5 159,203 - CCNA_00149 0.47 +2.8 159,227 + CCNA_00149 0.57 +3.3 159,227 + CCNA_00149 0.57 +3.0 159,227 + CCNA_00149 0.57 +3.0 159,230 - CCNA_00149 0.59 -0.8 159,266 - CCNA_00149 0.75 +0.5 159,279 + CCNA_00149 0.80 +3.2 159,345 + +1.7 159,346 + +0.7 159,346 + +0.3 159,354 - +2.0 159,354 - +1.8 159,370 + +1.1 159,391 - +2.1 159,402 + +1.3 159,520 - CCNA_00150 0.20 +2.2 159,531 + CCNA_00150 0.22 +1.3 159,536 + CCNA_00150 0.22 -1.3 159,613 + CCNA_00150 0.30 -0.4 159,613 + CCNA_00150 0.30 +1.5 159,619 + CCNA_00150 0.31 +0.8 159,621 - CCNA_00150 0.31 +0.4 159,651 + CCNA_00150 0.34 +0.4 159,683 - CCNA_00150 0.37 +1.4 159,721 - CCNA_00150 0.41 +2.4 159,756 + CCNA_00150 0.45 -0.7 159,758 - CCNA_00150 0.45 +3.7 159,761 + CCNA_00150 0.45 +2.1 159,769 - CCNA_00150 0.46 +2.0 159,769 - CCNA_00150 0.46 +2.0 159,769 - CCNA_00150 0.46 +4.5 159,769 - CCNA_00150 0.46 +2.6 159,776 + CCNA_00150 0.47 -0.8 159,809 - CCNA_00150 0.50 +1.6 159,821 + CCNA_00150 0.51 +0.9 159,874 - CCNA_00150 0.57 +1.6 159,978 + CCNA_00150 0.67 +2.1 159,990 - CCNA_00150 0.69 +3.6 159,995 + CCNA_00150 0.69 +1.1 160,013 + CCNA_00150 0.71 +0.8 160,018 + CCNA_00150 0.71 +1.5 160,026 - CCNA_00150 0.72 +2.1 160,026 - CCNA_00150 0.72 +2.0 160,056 + CCNA_00150 0.75 -0.2 160,116 - CCNA_00150 0.81 +1.9 160,121 - CCNA_00150 0.82 +1.6 160,154 - +2.2 160,172 - CCNA_00150 0.87 +2.4 160,172 - CCNA_00150 0.87 +2.4 160,176 + CCNA_00150 0.88 +1.0 160,190 - CCNA_00150 0.89 +1.8 160,203 + +0.6 160,211 - +1.1 160,215 + +0.1 160,220 + -1.8 160,238 + +0.3 160,241 - +2.7 160,246 - +2.5 160,259 - +2.3 160,300 - +2.1 160,304 + +1.6 160,304 + +0.4 160,304 + +1.4 160,304 + +0.3 160,305 - +2.1 160,312 - +3.8 160,312 - +1.6 160,314 - +2.0 160,314 - +2.7 160,329 + -0.7 160,337 - +3.4 160,396 - +1.8 160,405 + +0.2 160,406 - +2.5 160,406 - +2.1 160,413 + +2.4 160,426 + -0.1 160,455 + -0.0 160,455 + -0.4 160,455 + -1.1 160,456 + +0.4 160,463 - +1.7 160,463 - +1.9 160,463 - +1.4 160,463 - +1.7 160,463 - +2.5 160,480 + -2.4 160,511 - +0.5 160,520 - +0.5 160,571 - CCNA_00151 0.15 +1.1 160,571 - CCNA_00151 0.15 +1.4 160,605 + CCNA_00151 0.20 -1.3 160,641 - CCNA_00151 0.25 +0.2 160,646 - CCNA_00151 0.25 +2.8 160,675 + CCNA_00151 0.29 +1.2 160,675 + CCNA_00151 0.29 -2.4 160,675 + CCNA_00151 0.29 -0.8 160,683 - CCNA_00151 0.31 +1.2 160,683 - CCNA_00151 0.31 +0.5 160,683 - CCNA_00151 0.31 -1.2 160,683 - CCNA_00151 0.31 -0.2 160,683 - CCNA_00151 0.31 +2.8 160,683 - CCNA_00151 0.31 -0.2 160,683 - CCNA_00151 0.31 -0.8 160,699 + CCNA_00151 0.33 -0.7 160,726 + CCNA_00151 0.37 +0.2 160,734 - CCNA_00151 0.38 +1.0 160,755 - CCNA_00151 0.41 +1.0 160,761 + +0.8 160,774 - CCNA_00151 0.43 +0.5 160,780 - CCNA_00151 0.44 +1.4 160,796 - CCNA_00151 0.46 +0.5 160,848 - CCNA_00151 0.54 +0.5 160,864 + CCNA_00151 0.56 -2.6 160,873 - CCNA_00151 0.57 +0.1 160,940 - CCNA_00151 0.66 +0.1 160,989 + CCNA_00151 0.73 -1.2 160,999 + CCNA_00151 0.75 +0.5 160,999 + CCNA_00151 0.75 +0.0 161,002 - CCNA_00151 0.75 -2.6 161,007 - CCNA_00151 0.76 -2.3 161,025 - CCNA_00151 0.78 -0.6 161,046 + CCNA_00151 0.81 -1.4 161,054 - CCNA_00151 0.82 -0.2 161,054 - CCNA_00151 0.82 -0.2 161,067 - CCNA_00151 0.84 -0.6 161,072 - CCNA_00151 0.85 +1.3 161,079 - CCNA_00151 0.86 +0.6 161,089 - CCNA_00151 0.87 -0.2 161,104 - CCNA_00151 0.89 -0.3 161,106 - CCNA_00151 0.90 -0.5 161,135 - -0.7 161,135 - +0.3 161,143 + -1.9 161,143 + -0.7 161,151 - +0.5 161,151 - -0.9 161,161 - -2.7 161,187 + -0.4 161,187 + +0.6 161,195 - +1.5 161,205 + -1.0 161,221 - -2.3 161,221 - -2.0 161,221 - -0.1 161,244 - -0.5 161,277 - -1.1
Or see this region's nucleotide sequence