Strain Fitness in Caulobacter crescentus NA1000 around CCNA_00072

Experiment: a-Cyclodextrin (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_00070 and CCNA_00071 are separated by 4 nucleotidesCCNA_00071 and CCNA_00072 are separated by 43 nucleotidesCCNA_00072 and CCNA_00073 overlap by 4 nucleotides CCNA_00070: CCNA_00070 - porphobilinogen deaminase, at 71,977 to 72,945 _00070 CCNA_00071: CCNA_00071 - uroporphyrinogen-III synthase, at 72,950 to 73,636 _00071 CCNA_00072: CCNA_00072 - hypothetical protein, at 73,680 to 74,576 _00072 CCNA_00073: CCNA_00073 - HemY domain membrane protein, at 74,573 to 76,108 _00073 Position (kb) 73 74 75Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5at 72.967 kb on + strandat 72.967 kb on + strandat 72.967 kb on + strandat 73.615 kb on + strandat 73.623 kb on - strandat 73.632 kb on - strandat 73.650 kb on - strandat 73.650 kb on - strandat 73.667 kb on - strandat 73.723 kb on + strandat 73.731 kb on + strandat 73.739 kb on - strandat 73.776 kb on + strand, within CCNA_00072at 73.786 kb on + strand, within CCNA_00072at 73.800 kb on + strand, within CCNA_00072at 73.822 kb on + strand, within CCNA_00072at 73.830 kb on - strand, within CCNA_00072at 73.830 kb on - strand, within CCNA_00072at 73.830 kb on - strand, within CCNA_00072at 73.830 kb on - strand, within CCNA_00072at 73.831 kb on - strand, within CCNA_00072at 73.890 kb on - strand, within CCNA_00072at 73.946 kb on + strand, within CCNA_00072at 73.967 kb on - strand, within CCNA_00072at 73.973 kb on + strand, within CCNA_00072at 73.973 kb on + strand, within CCNA_00072at 73.981 kb on - strand, within CCNA_00072at 73.981 kb on - strand, within CCNA_00072at 74.008 kb on + strand, within CCNA_00072at 74.010 kb on + strand, within CCNA_00072at 74.027 kb on + strand, within CCNA_00072at 74.036 kb on - strand, within CCNA_00072at 74.067 kb on + strand, within CCNA_00072at 74.072 kb on + strand, within CCNA_00072at 74.080 kb on - strandat 74.097 kb on - strand, within CCNA_00072at 74.120 kb on - strand, within CCNA_00072at 74.125 kb on + strand, within CCNA_00072at 74.127 kb on - strand, within CCNA_00072at 74.135 kb on + strand, within CCNA_00072at 74.143 kb on + strand, within CCNA_00072at 74.166 kb on - strand, within CCNA_00072at 74.207 kb on - strand, within CCNA_00072at 74.262 kb on - strand, within CCNA_00072at 74.290 kb on + strand, within CCNA_00072at 74.295 kb on + strand, within CCNA_00072at 74.300 kb on + strand, within CCNA_00072at 74.300 kb on + strand, within CCNA_00072at 74.300 kb on + strand, within CCNA_00072at 74.300 kb on + strand, within CCNA_00072at 74.308 kb on - strand, within CCNA_00072at 74.317 kb on - strand, within CCNA_00072at 74.369 kb on + strand, within CCNA_00072at 74.369 kb on + strand, within CCNA_00072at 74.369 kb on + strand, within CCNA_00072at 74.379 kb on + strand, within CCNA_00072at 74.511 kb on - strandat 74.533 kb on + strandat 74.536 kb on - strandat 74.596 kb on + strandat 74.630 kb on + strandat 74.632 kb on - strandat 74.638 kb on - strandat 74.719 kb on + strandat 74.719 kb on + strandat 74.719 kb on + strandat 74.733 kb on + strand, within CCNA_00073at 74.734 kb on - strand, within CCNA_00073at 74.734 kb on - strand, within CCNA_00073at 74.743 kb on + strand, within CCNA_00073at 74.743 kb on + strand, within CCNA_00073at 74.751 kb on - strand, within CCNA_00073at 74.751 kb on - strand, within CCNA_00073at 74.754 kb on + strand, within CCNA_00073at 74.754 kb on + strand, within CCNA_00073at 74.762 kb on - strand, within CCNA_00073at 74.774 kb on + strand, within CCNA_00073at 74.782 kb on - strand, within CCNA_00073at 74.782 kb on - strand, within CCNA_00073at 74.789 kb on + strand, within CCNA_00073at 74.789 kb on + strand, within CCNA_00073at 74.794 kb on + strand, within CCNA_00073at 74.797 kb on - strand, within CCNA_00073at 74.808 kb on - strand, within CCNA_00073at 74.808 kb on - strand, within CCNA_00073at 74.811 kb on + strand, within CCNA_00073at 74.821 kb on + strand, within CCNA_00073at 74.833 kb on - strand, within CCNA_00073at 74.853 kb on - strand, within CCNA_00073at 74.891 kb on + strand, within CCNA_00073at 74.927 kb on + strand, within CCNA_00073at 74.927 kb on + strand, within CCNA_00073at 74.946 kb on - strand, within CCNA_00073at 74.984 kb on + strand, within CCNA_00073at 74.984 kb on + strand, within CCNA_00073at 75.034 kb on - strand, within CCNA_00073at 75.045 kb on + strand, within CCNA_00073at 75.053 kb on - strand, within CCNA_00073at 75.064 kb on + strand, within CCNA_00073at 75.064 kb on + strand, within CCNA_00073at 75.064 kb on + strand, within CCNA_00073at 75.072 kb on - strand, within CCNA_00073at 75.108 kb on + strand, within CCNA_00073at 75.149 kb on + strand, within CCNA_00073at 75.151 kb on + strand, within CCNA_00073at 75.151 kb on + strand, within CCNA_00073at 75.159 kb on - strand, within CCNA_00073at 75.188 kb on + strand, within CCNA_00073at 75.210 kb on + strand, within CCNA_00073at 75.210 kb on + strand, within CCNA_00073at 75.213 kb on - strand, within CCNA_00073at 75.225 kb on - strand, within CCNA_00073at 75.304 kb on + strand, within CCNA_00073at 75.304 kb on + strand, within CCNA_00073at 75.312 kb on - strand, within CCNA_00073at 75.312 kb on - strand, within CCNA_00073at 75.312 kb on - strand, within CCNA_00073at 75.336 kb on - strand, within CCNA_00073at 75.352 kb on + strand, within CCNA_00073at 75.352 kb on + strand, within CCNA_00073at 75.352 kb on + strand, within CCNA_00073at 75.360 kb on - strand, within CCNA_00073at 75.375 kb on + strand, within CCNA_00073at 75.375 kb on + strand, within CCNA_00073at 75.379 kb on + strand, within CCNA_00073at 75.417 kb on - strand, within CCNA_00073at 75.417 kb on - strand, within CCNA_00073at 75.417 kb on - strand, within CCNA_00073at 75.444 kb on - strand, within CCNA_00073at 75.444 kb on - strand, within CCNA_00073at 75.481 kb on + strand, within CCNA_00073at 75.520 kb on - strand, within CCNA_00073at 75.520 kb on - strand, within CCNA_00073at 75.537 kb on - strand, within CCNA_00073

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Per-strain Table

Position Strand Gene LocusTag Fraction a-Cyclodextrin (C)
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72,967 + +1.0
72,967 + +0.5
72,967 + +0.7
73,615 + -0.5
73,623 - -0.2
73,632 - -0.4
73,650 - -0.9
73,650 - -2.0
73,667 - -0.1
73,723 + +3.3
73,731 + +5.2
73,739 - -0.6
73,776 + CCNA_00072 0.11 +2.9
73,786 + CCNA_00072 0.12 +2.6
73,800 + CCNA_00072 0.13 +2.7
73,822 + CCNA_00072 0.16 +2.6
73,830 - CCNA_00072 0.17 +1.0
73,830 - CCNA_00072 0.17 -0.0
73,830 - CCNA_00072 0.17 +0.3
73,830 - CCNA_00072 0.17 +2.2
73,831 - CCNA_00072 0.17 +4.1
73,890 - CCNA_00072 0.23 +0.2
73,946 + CCNA_00072 0.30 +2.1
73,967 - CCNA_00072 0.32 +1.7
73,973 + CCNA_00072 0.33 +3.1
73,973 + CCNA_00072 0.33 +2.6
73,981 - CCNA_00072 0.34 +1.2
73,981 - CCNA_00072 0.34 +0.0
74,008 + CCNA_00072 0.37 +2.8
74,010 + CCNA_00072 0.37 +2.8
74,027 + CCNA_00072 0.39 +2.9
74,036 - CCNA_00072 0.40 +2.1
74,067 + CCNA_00072 0.43 +3.5
74,072 + CCNA_00072 0.44 +2.5
74,080 - +1.2
74,097 - CCNA_00072 0.46 +1.2
74,120 - CCNA_00072 0.49 +0.8
74,125 + CCNA_00072 0.50 +2.2
74,127 - CCNA_00072 0.50 +1.4
74,135 + CCNA_00072 0.51 +2.6
74,143 + CCNA_00072 0.52 +2.1
74,166 - CCNA_00072 0.54 -0.1
74,207 - CCNA_00072 0.59 +0.0
74,262 - CCNA_00072 0.65 +1.8
74,290 + CCNA_00072 0.68 +2.7
74,295 + CCNA_00072 0.69 +2.2
74,300 + CCNA_00072 0.69 +2.2
74,300 + CCNA_00072 0.69 +3.6
74,300 + CCNA_00072 0.69 +2.9
74,300 + CCNA_00072 0.69 +2.3
74,308 - CCNA_00072 0.70 -3.0
74,317 - CCNA_00072 0.71 +0.1
74,369 + CCNA_00072 0.77 +2.4
74,369 + CCNA_00072 0.77 +2.6
74,369 + CCNA_00072 0.77 +1.9
74,379 + CCNA_00072 0.78 +2.6
74,511 - +1.8
74,533 + +2.1
74,536 - -0.7
74,596 + +1.7
74,630 + +2.8
74,632 - +0.2
74,638 - +0.1
74,719 + +2.9
74,719 + +3.1
74,719 + +4.1
74,733 + CCNA_00073 0.10 +2.7
74,734 - CCNA_00073 0.10 +0.5
74,734 - CCNA_00073 0.10 +2.0
74,743 + CCNA_00073 0.11 +3.0
74,743 + CCNA_00073 0.11 +1.5
74,751 - CCNA_00073 0.12 +0.9
74,751 - CCNA_00073 0.12 +1.4
74,754 + CCNA_00073 0.12 +2.3
74,754 + CCNA_00073 0.12 +3.4
74,762 - CCNA_00073 0.12 +1.7
74,774 + CCNA_00073 0.13 +3.7
74,782 - CCNA_00073 0.14 +0.3
74,782 - CCNA_00073 0.14 +0.2
74,789 + CCNA_00073 0.14 +2.6
74,789 + CCNA_00073 0.14 +3.0
74,794 + CCNA_00073 0.14 +2.4
74,797 - CCNA_00073 0.15 +0.7
74,808 - CCNA_00073 0.15 +1.3
74,808 - CCNA_00073 0.15 +1.7
74,811 + CCNA_00073 0.15 +3.1
74,821 + CCNA_00073 0.16 +2.9
74,833 - CCNA_00073 0.17 +1.0
74,853 - CCNA_00073 0.18 +1.4
74,891 + CCNA_00073 0.21 +3.3
74,927 + CCNA_00073 0.23 +2.7
74,927 + CCNA_00073 0.23 +2.2
74,946 - CCNA_00073 0.24 +2.6
74,984 + CCNA_00073 0.27 +2.6
74,984 + CCNA_00073 0.27 +2.4
75,034 - CCNA_00073 0.30 +2.1
75,045 + CCNA_00073 0.31 +3.0
75,053 - CCNA_00073 0.31 +0.5
75,064 + CCNA_00073 0.32 +2.8
75,064 + CCNA_00073 0.32 +2.6
75,064 + CCNA_00073 0.32 +2.7
75,072 - CCNA_00073 0.32 +1.0
75,108 + CCNA_00073 0.35 +3.2
75,149 + CCNA_00073 0.38 +2.8
75,151 + CCNA_00073 0.38 +2.2
75,151 + CCNA_00073 0.38 +2.2
75,159 - CCNA_00073 0.38 +1.5
75,188 + CCNA_00073 0.40 +2.5
75,210 + CCNA_00073 0.41 +0.7
75,210 + CCNA_00073 0.41 +1.9
75,213 - CCNA_00073 0.42 +1.7
75,225 - CCNA_00073 0.42 +1.3
75,304 + CCNA_00073 0.48 +1.8
75,304 + CCNA_00073 0.48 +0.9
75,312 - CCNA_00073 0.48 +1.6
75,312 - CCNA_00073 0.48 +1.5
75,312 - CCNA_00073 0.48 +0.6
75,336 - CCNA_00073 0.50 +0.6
75,352 + CCNA_00073 0.51 +2.5
75,352 + CCNA_00073 0.51 +2.7
75,352 + CCNA_00073 0.51 +2.4
75,360 - CCNA_00073 0.51 +1.2
75,375 + CCNA_00073 0.52 +2.4
75,375 + CCNA_00073 0.52 +2.0
75,379 + CCNA_00073 0.52 +2.8
75,417 - CCNA_00073 0.55 +1.9
75,417 - CCNA_00073 0.55 +2.4
75,417 - CCNA_00073 0.55 +2.2
75,444 - CCNA_00073 0.57 +1.6
75,444 - CCNA_00073 0.57 +0.5
75,481 + CCNA_00073 0.59 +2.7
75,520 - CCNA_00073 0.62 +1.7
75,520 - CCNA_00073 0.62 +1.1
75,537 - CCNA_00073 0.63 +0.9

Or see this region's nucleotide sequence