Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS33910

Experiment: L-Rhamnose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS33900 and BPHYT_RS33905 are separated by 153 nucleotidesBPHYT_RS33905 and BPHYT_RS33910 are separated by 87 nucleotidesBPHYT_RS33910 and BPHYT_RS33915 are separated by 6 nucleotides BPHYT_RS33900: BPHYT_RS33900 - 3-isopropylmalate dehydrogenase, at 3,198,523 to 3,199,590 _RS33900 BPHYT_RS33905: BPHYT_RS33905 - 3-isopropylmalate dehydratase small subunit, at 3,199,744 to 3,200,397 _RS33905 BPHYT_RS33910: BPHYT_RS33910 - entericidin, at 3,200,485 to 3,200,643 _RS33910 BPHYT_RS33915: BPHYT_RS33915 - isopropylmalate isomerase, at 3,200,650 to 3,202,059 _RS33915 Position (kb) 3200 3201Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 3199.865 kb on + strand, within BPHYT_RS33905at 3200.256 kb on - strand, within BPHYT_RS33905at 3200.380 kb on + strandat 3200.668 kb on - strandat 3200.728 kb on - strandat 3200.982 kb on - strand, within BPHYT_RS33915at 3200.982 kb on - strand, within BPHYT_RS33915at 3201.087 kb on - strand, within BPHYT_RS33915at 3201.278 kb on + strand, within BPHYT_RS33915

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Rhamnose (C)
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3,199,865 + BPHYT_RS33905 0.19 -0.3
3,200,256 - BPHYT_RS33905 0.78 -5.0
3,200,380 + -1.3
3,200,668 - +1.5
3,200,728 - -3.1
3,200,982 - BPHYT_RS33915 0.24 -4.7
3,200,982 - BPHYT_RS33915 0.24 -5.1
3,201,087 - BPHYT_RS33915 0.31 -3.2
3,201,278 + BPHYT_RS33915 0.45 -4.6

Or see this region's nucleotide sequence