Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS12075

Experiment: L-Rhamnose (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntBPHYT_RS12065 and BPHYT_RS12070 are separated by 73 nucleotidesBPHYT_RS12070 and BPHYT_RS12075 overlap by 4 nucleotidesBPHYT_RS12075 and BPHYT_RS12080 are separated by 3 nucleotidesBPHYT_RS12080 and BPHYT_RS12085 are separated by 128 nucleotides BPHYT_RS12065: BPHYT_RS12065 - RNA methyltransferase, at 2,750,697 to 2,751,482 _RS12065 BPHYT_RS12070: BPHYT_RS12070 - ribonuclease HII, at 2,751,556 to 2,752,302 _RS12070 BPHYT_RS12075: BPHYT_RS12075 - lipid-A-disaccharide synthase, at 2,752,299 to 2,753,468 _RS12075 BPHYT_RS12080: BPHYT_RS12080 - acyl-[acyl-carrier-protein]--UDP-N- acetylglucosamine O-acyltransferase, at 2,753,472 to 2,754,260 _RS12080 BPHYT_RS12085: BPHYT_RS12085 - 3-hydroxyacyl-ACP dehydratase, at 2,754,389 to 2,754,853 _RS12085 Position (kb) 2752 2753 2754Strain fitness (log2 ratio) -1 0 1at 2751.404 kb on + strandat 2751.404 kb on + strandat 2751.404 kb on + strandat 2751.404 kb on + strandat 2751.448 kb on + strandat 2751.449 kb on - strandat 2751.535 kb on + strandat 2751.536 kb on - strandat 2752.040 kb on + strand, within BPHYT_RS12070at 2752.040 kb on + strand, within BPHYT_RS12070at 2752.100 kb on - strand, within BPHYT_RS12070at 2752.276 kb on - strandat 2752.276 kb on - strandat 2754.391 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Rhamnose (C)
remove
2,751,404 + +0.2
2,751,404 + -1.0
2,751,404 + -0.4
2,751,404 + +0.3
2,751,448 + -0.3
2,751,449 - -0.4
2,751,535 + -0.2
2,751,536 - -0.1
2,752,040 + BPHYT_RS12070 0.65 -0.5
2,752,040 + BPHYT_RS12070 0.65 +0.1
2,752,100 - BPHYT_RS12070 0.73 +0.2
2,752,276 - +1.0
2,752,276 - -1.0
2,754,391 - +0.1

Or see this region's nucleotide sequence