Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_23430

Experiment: D-Galactose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_23425 and AO356_23430 are separated by 384 nucleotidesAO356_23430 and AO356_23435 are separated by 14 nucleotidesAO356_23435 and AO356_23440 overlap by 8 nucleotides AO356_23425: AO356_23425 - saccharopine dehydrogenase, at 5,252,502 to 5,253,746 _23425 AO356_23430: AO356_23430 - NAD-dependent deacetylase, at 5,254,131 to 5,254,886 _23430 AO356_23435: AO356_23435 - hypothetical protein, at 5,254,901 to 5,255,380 _23435 AO356_23440: AO356_23440 - calpastatin, at 5,255,373 to 5,255,801 _23440 Position (kb) 5254 5255Strain fitness (log2 ratio) -2 -1 0 1at 5253.207 kb on + strand, within AO356_23425at 5253.208 kb on - strand, within AO356_23425at 5253.294 kb on + strand, within AO356_23425at 5253.294 kb on + strand, within AO356_23425at 5253.295 kb on - strand, within AO356_23425at 5253.295 kb on - strand, within AO356_23425at 5253.504 kb on + strand, within AO356_23425at 5253.837 kb on - strandat 5253.918 kb on + strandat 5253.918 kb on + strandat 5253.919 kb on - strandat 5253.985 kb on - strandat 5254.041 kb on - strandat 5254.165 kb on + strandat 5254.165 kb on + strandat 5254.165 kb on + strandat 5254.165 kb on + strandat 5254.166 kb on - strandat 5254.166 kb on - strandat 5254.166 kb on - strandat 5254.166 kb on - strandat 5254.217 kb on + strand, within AO356_23430at 5254.218 kb on - strand, within AO356_23430at 5254.223 kb on + strand, within AO356_23430at 5254.223 kb on + strand, within AO356_23430at 5254.223 kb on + strand, within AO356_23430at 5254.224 kb on - strand, within AO356_23430at 5254.224 kb on - strand, within AO356_23430at 5254.678 kb on + strand, within AO356_23430at 5254.678 kb on + strand, within AO356_23430at 5254.678 kb on + strand, within AO356_23430at 5254.679 kb on - strand, within AO356_23430at 5254.909 kb on + strandat 5254.909 kb on + strandat 5254.909 kb on + strandat 5254.910 kb on - strandat 5254.910 kb on - strandat 5254.910 kb on - strandat 5254.910 kb on - strandat 5255.000 kb on + strand, within AO356_23435at 5255.000 kb on + strand, within AO356_23435at 5255.001 kb on - strand, within AO356_23435at 5255.078 kb on + strand, within AO356_23435at 5255.078 kb on + strand, within AO356_23435at 5255.097 kb on + strand, within AO356_23435at 5255.310 kb on + strand, within AO356_23435at 5255.311 kb on - strand, within AO356_23435at 5255.370 kb on + strandat 5255.374 kb on + strandat 5255.374 kb on + strandat 5255.374 kb on + strandat 5255.375 kb on - strandat 5255.375 kb on - strandat 5255.399 kb on + strandat 5255.399 kb on + strandat 5255.400 kb on - strandat 5255.400 kb on - strandat 5255.400 kb on - strandat 5255.403 kb on + strandat 5255.403 kb on + strandat 5255.404 kb on - strandat 5255.404 kb on - strandat 5255.456 kb on - strand, within AO356_23440at 5255.456 kb on - strand, within AO356_23440at 5255.647 kb on + strand, within AO356_23440at 5255.650 kb on + strand, within AO356_23440at 5255.650 kb on + strand, within AO356_23440at 5255.650 kb on + strand, within AO356_23440at 5255.650 kb on + strand, within AO356_23440at 5255.651 kb on - strand, within AO356_23440at 5255.651 kb on - strand, within AO356_23440at 5255.651 kb on - strand, within AO356_23440at 5255.682 kb on + strand, within AO356_23440at 5255.682 kb on + strand, within AO356_23440at 5255.733 kb on + strand, within AO356_23440at 5255.755 kb on + strand, within AO356_23440at 5255.755 kb on + strand, within AO356_23440at 5255.755 kb on + strand, within AO356_23440at 5255.756 kb on - strand, within AO356_23440at 5255.801 kb on + strandat 5255.801 kb on + strandat 5255.801 kb on + strandat 5255.801 kb on + strandat 5255.802 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Galactose (C)
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5,253,207 + AO356_23425 0.57 +0.5
5,253,208 - AO356_23425 0.57 +0.4
5,253,294 + AO356_23425 0.64 -1.4
5,253,294 + AO356_23425 0.64 +0.6
5,253,295 - AO356_23425 0.64 -0.0
5,253,295 - AO356_23425 0.64 -0.1
5,253,504 + AO356_23425 0.80 -0.9
5,253,837 - -0.3
5,253,918 + -0.6
5,253,918 + -0.4
5,253,919 - -0.1
5,253,985 - -0.4
5,254,041 - -0.4
5,254,165 + +0.3
5,254,165 + +0.7
5,254,165 + -0.3
5,254,165 + +1.0
5,254,166 - -0.6
5,254,166 - -0.0
5,254,166 - +0.5
5,254,166 - +0.3
5,254,217 + AO356_23430 0.11 +0.3
5,254,218 - AO356_23430 0.12 -0.5
5,254,223 + AO356_23430 0.12 +1.1
5,254,223 + AO356_23430 0.12 +1.0
5,254,223 + AO356_23430 0.12 -0.2
5,254,224 - AO356_23430 0.12 -0.6
5,254,224 - AO356_23430 0.12 -0.3
5,254,678 + AO356_23430 0.72 +1.2
5,254,678 + AO356_23430 0.72 -0.1
5,254,678 + AO356_23430 0.72 +0.5
5,254,679 - AO356_23430 0.72 -0.0
5,254,909 + -0.0
5,254,909 + +0.3
5,254,909 + -0.2
5,254,910 - -0.4
5,254,910 - -1.3
5,254,910 - +1.0
5,254,910 - -0.3
5,255,000 + AO356_23435 0.21 -0.0
5,255,000 + AO356_23435 0.21 -0.1
5,255,001 - AO356_23435 0.21 +0.4
5,255,078 + AO356_23435 0.37 +0.1
5,255,078 + AO356_23435 0.37 -1.6
5,255,097 + AO356_23435 0.41 +0.4
5,255,310 + AO356_23435 0.85 -1.5
5,255,311 - AO356_23435 0.85 -0.0
5,255,370 + +1.2
5,255,374 + -0.5
5,255,374 + +0.5
5,255,374 + +0.3
5,255,375 - -0.0
5,255,375 - +0.4
5,255,399 + +1.7
5,255,399 + -0.6
5,255,400 - -0.6
5,255,400 - -0.4
5,255,400 - +0.4
5,255,403 + +0.2
5,255,403 + -1.6
5,255,404 - -0.5
5,255,404 - -2.0
5,255,456 - AO356_23440 0.19 -1.8
5,255,456 - AO356_23440 0.19 +0.1
5,255,647 + AO356_23440 0.64 +1.0
5,255,650 + AO356_23440 0.65 -0.7
5,255,650 + AO356_23440 0.65 +0.1
5,255,650 + AO356_23440 0.65 -1.0
5,255,650 + AO356_23440 0.65 +0.5
5,255,651 - AO356_23440 0.65 -0.0
5,255,651 - AO356_23440 0.65 -2.0
5,255,651 - AO356_23440 0.65 -1.2
5,255,682 + AO356_23440 0.72 -0.1
5,255,682 + AO356_23440 0.72 +0.1
5,255,733 + AO356_23440 0.84 -1.4
5,255,755 + AO356_23440 0.89 -1.8
5,255,755 + AO356_23440 0.89 +1.6
5,255,755 + AO356_23440 0.89 +0.8
5,255,756 - AO356_23440 0.89 +0.3
5,255,801 + +0.4
5,255,801 + -0.9
5,255,801 + +0.2
5,255,801 + -0.4
5,255,802 - -0.0

Or see this region's nucleotide sequence